Ss1.1-Thy1-THY010057D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACAGAGGCCCGGCACAACCTTCCTGTGTGGTTTCAGCAGCCAAGAGTGACATGGACCT GGGGAAGCCTATGAAGAAGAGCCTGCTGGTGGTGGCTCTCCTTGTCATTTTCCAGGTGTG CCTGTGCCAGGATGAGGTCACGGACGACTACATCGGCGACAACACCACGGTGGACTACAC GCTGTACGAGTCCGTGTGCTTCAAGAAGGACGTGCGGACCTTTAAGGCCTGGTTCCTCCC GGTCATGTACTCCATCATCTGCTTCGTGGGCCTGCTGGGCAACGGGCTGGTCATGCTGAC CTACATCTATTTCAAGAGGCTCAAGACCATGACCGACACGTACCTGCTCAACTTGGCCGT GGCCGACATCCTCTTCCTCCTGACCCTTCCCTTCTGGGCATACAGCGCGGCCAAGTCCTG GGTCTTCGGAGTCCACGTCTGCAAACTCATCTTCGGCATCTACAAGATCAGCTTCTTCAG CGGCATGCTTCTGCTTCTCTGCATCAGCATCGACCGCTACGTGGCCATCGTGCAGGCCGT GTCGGCGCACCGCCACCGCGCCCGCGTGCTTCTCATCAGCAAGCTCTCCTGCGTGGGCAT CTGGATGCTGGCCATGGTGCTGTCCACGCCGGAGCTGCTGTACAGCGGCACCCAGAAGAG CAGCAGCGAGCAGGCGCTCCGGTGCTCCCTCATCACCGAGCACGTGGAGGCCCTGATCAC CATCCAGGTGGCCCAGATGGTGGTGGGCTTTCTGATCCCCCTGGTGGCCATGAGCTTCTG CTACCTCGTCATCATCCGCACCCTGCTCCAGGCGCGCAACTTCGAGCGCAACAAGGCCCA TCAGGTGATCATCGCCGTGGTCGTGGTCTTCGTGGCCTTCCAGCTGCCCTACAACGGCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACAGAGGCCCGGCACAACCTTCCTGTGTGGTTTCAGCAGCCAAGAGTGACATGGACCT GGGGAAGCCTATGAAGAAGAGCCTGCTGGTGGTGGCTCTCCTTGTCATTTTCCAGGTGTG CCTGTGCCAGGATGAGGTCACGGACGACTACATCGGCGACAACACCACGGTGGACTACAC GCTGTACGAGTCCGTGTGCTTCAAGAAGGACGTGCGGACCTTTAAGGCCTGGTTCCTCCC GGTCATGTACTCCATCATCTGCTTCGTGGGCCTGCTGGGCAACGGGCTGGTCATGCTGAC CTACATCTATTTCAAGAGGCTCAAGACCATGACCGACACGTACCTGCTCAACTTGGCCGT GGCCGACATCCTCTTCCTCCTGACCCTTCCCTTCTGGGCATACAGCGCGGCCAAGTCCTG GGTCTTCGGAGTCCACGTCTGCAAACTCATCTTCGGCATCTACAAGATCAGCTTCTTCAG CGGCATGCTTCTGCTTCTCTGCATCAGCATCGACCGCTACGTGGCCATCGTGCAGGCCGT GTCGGCGCACCGCCACCGCGCCCGCGTGCTTCTCATCAGCAAGCTCTCCTGCGTGGGCAT CTGGATGCTGGCCATGGTGCTGTCCACGCCGGAGCTGCTGTACAGCGGCACCCAGAAGAG CAGCAGCGAGCAGGCGCTCCGGTGCTCCCTCATCACCGAGCACGTGGAGGCCCTGATCAC CATCCAGGTGGCCCAGATGGTGGTGGGCTTTCTGATCCCCCTGGTGGCCATGAGCTTCTG CTACCTCGTCATCATCCGCACCCTGCTCCAGGCGCGCAACTTCGAGCGCAACAAGGCCCA TCAGGTGATCATCGCCGTGGTCGTGGTCTTCGTGGCCTTCCAGCTGCCCTACAACGGCGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 432-551, - strand, RNAz p=0.873833 | |
| 632-751, + strand, RNAz p=0.956764 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 432-551, - strand, RNAz p=0.873833 | |
| 632-751, + strand, RNAz p=0.956764 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 113-900, gnl|bosTau2|chr19 (34059161-34059948) | |
| 113-900, gnl|Hg17|chr17 (35965599-35964812) | |
| 113-900, gnl|Mm7|chr11 (99255076-99254289) | |
| 219-639, gnl|bosTau2|chr15 (16875026-16874612) | |
| 219-639, gnl|canFam2|chr5 (17930532-17930213) | |
| 219-639, gnl|danRer3|chr6 (10855635-10855953) | |
| 219-639, gnl|dasNov1|scaffold_35767 (10496-10180) | |
| 219-639, gnl|echTel1|scaffold_241247 (6164-5845) | |
| 219-639, gnl|fr1|chrUn (66093694-66093375) | |
| 219-639, gnl|galGal2|chr24 (5246446-5246765) | |
| 219-639, gnl|hg17|chr11 (118269608-118269927) | |
| 219-639, gnl|Hg17|chr11 (118269606-118270020) | |
| 219-639, gnl|loxAfr1|scaffold_7293 (58206-58514) | |
| 219-639, gnl|mm7|chr9 (44448555-44448236) | |
| 219-639, gnl|Mm7|chr9 (44448555-44448141) | |
| 219-639, gnl|monDom2|scaffold_2 (119775084-119774768) | |
| 219-639, gnl|oryCun1|scaffold_150820 (988-677) | |
| 219-639, gnl|panTro1|chr9 (120287816-120288135) | |
| 219-639, gnl|rheMac2|chr14 (117289781-117290100) | |
| 219-639, gnl|rn3|chr8 (47494907-47494588) | |
| 219-639, gnl|tetNig1|chr16 (5262721-5262402) | |
| 219-639, gnl|xenTro1|scaffold_18 (107884-108200) | |
| 235-534, gnl|bosTau2|chr12 (38033193-38033498) | |
| 235-534, gnl|Hg17|chr13 (96437910-96437605) | |
| 235-534, gnl|Mm7|chr14 (114432059-114431754) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 113-900, gnl|bosTau2|chr19 (34059161-34059948) | |
| 113-900, gnl|Hg17|chr17 (35965599-35964812) | |
| 113-900, gnl|Mm7|chr11 (99255076-99254289) | |
| 219-639, gnl|bosTau2|chr15 (16875026-16874612) | |
| 219-639, gnl|canFam2|chr5 (17930532-17930213) | |
| 219-639, gnl|danRer3|chr6 (10855635-10855953) | |
| 219-639, gnl|dasNov1|scaffold_35767 (10496-10180) | |
| 219-639, gnl|echTel1|scaffold_241247 (6164-5845) | |
| 219-639, gnl|fr1|chrUn (66093694-66093375) | |
| 219-639, gnl|galGal2|chr24 (5246446-5246765) | |
| 219-639, gnl|hg17|chr11 (118269608-118269927) | |
| 219-639, gnl|Hg17|chr11 (118269606-118270020) | |
| 219-639, gnl|loxAfr1|scaffold_7293 (58206-58514) | |
| 219-639, gnl|mm7|chr9 (44448555-44448236) | |
| 219-639, gnl|Mm7|chr9 (44448555-44448141) | |
| 219-639, gnl|monDom2|scaffold_2 (119775084-119774768) | |
| 219-639, gnl|oryCun1|scaffold_150820 (988-677) | |
| 219-639, gnl|panTro1|chr9 (120287816-120288135) | |
| 219-639, gnl|rheMac2|chr14 (117289781-117290100) | |
| 219-639, gnl|rn3|chr8 (47494907-47494588) | |
| 219-639, gnl|tetNig1|chr16 (5262721-5262402) | |
| 219-639, gnl|xenTro1|scaffold_18 (107884-108200) | |
| 235-534, gnl|bosTau2|chr12 (38033193-38033498) | |
| 235-534, gnl|Hg17|chr13 (96437910-96437605) | |
| 235-534, gnl|Mm7|chr14 (114432059-114431754) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) |