Ss1.1-Thy1-THY010057E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACTTGGCCACCGCCACTGGTACTGGAGATGCTGCGCTGTGGGGGCCAGGCTCAGGGAGG GGTGGGAGTAAAGGGGGCTGCTGCAGCTGTCAAGCCATAAATCAGGCTGACCCTTGACTC TGGGCAAGATGGCAAATCCGGCTTCCACACCAGCAGTCCCGAGCAGAGGTCATAACTGCA CGGATCTGTTAGCGCTTGGAATCCCCTCTGTGATCACGGCCTGGGGACTGTGGGCCATCT TAGCGGCTGTGACGCTGCTACTTCTCATCTCGCTGGCTGTGCACTTGTCCCAGTGGACTA GAGGCCGGAGCAGGAGGCATCCAGGTCTGGGAAGGTCTGGCGAGTCTGTGGACGAAGTCC CCCTGTATGGGAACCTGCATTATCTGCAGACAGGACGGCTGTCTCAAGAACAAGGGCCAG ACCAACAGGAACCAACACCTGGAAGCTCTGCCAGGGCTGCAGAAGAGGTGATGTGCTATA CCAGTCTGCAGCTGCGGCCTCCTCAGGGCCGGATCCCCAGCCCTGCAAGCCCCATCAAAT ACTCAGAGGTGGTGCTGGACTCTGAGCCAGAGCCCCAGGCTTCAGGTCCTGAGCCGGAGC TCTACGCCTCAGTGTGTGCCCAGACCCGCAGAGCCCGGGCTTCCTTTCCAGACCAGGCCT ACGCCAACAGCCAGCCTGCACCCAGCTGAGATGGAGGGCCTGGCACACTGGGGCACGCAT CTCCCCCACCTCCTCTGTTGCAGGGGTTACTGCTACCCTGTCTGAGGTGTGACTGTTTTC CAACCCCCCCTGAAGACAAGCAGCCATTGCCCAGTCACAGGGGGGGTGTTCCCTTAACTT CTTTTCTGAGTTGTGACCGACCCATCTCAGAGGAACGCCAGGCCCCCAGCTTCTTGACAA TGGAGGAAGCAAAGGCAGTGGCCCCCTCCCCACCCCTTTTTTTTCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACTTGGCCACCGCCACTGGTACTGGAGATGCTGCGCTGTGGGGGCCAGGCTCAGGGAGG GGTGGGAGTAAAGGGGGCTGCTGCAGCTGTCAAGCCATAAATCAGGCTGACCCTTGACTC TGGGCAAGATGGCAAATCCGGCTTCCACACCAGCAGTCCCGAGCAGAGGTCATAACTGCA CGGATCTGTTAGCGCTTGGAATCCCCTCTGTGATCACGGCCTGGGGACTGTGGGCCATCT TAGCGGCTGTGACGCTGCTACTTCTCATCTCGCTGGCTGTGCACTTGTCCCAGTGGACTA GAGGCCGGAGCAGGAGGCATCCAGGTCTGGGAAGGTCTGGCGAGTCTGTGGACGAAGTCC CCCTGTATGGGAACCTGCATTATCTGCAGACAGGACGGCTGTCTCAAGAACAAGGGCCAG ACCAACAGGAACCAACACCTGGAAGCTCTGCCAGGGCTGCAGAAGAGGTGATGTGCTATA CCAGTCTGCAGCTGCGGCCTCCTCAGGGCCGGATCCCCAGCCCTGCAAGCCCCATCAAAT ACTCAGAGGTGGTGCTGGACTCTGAGCCAGAGCCCCAGGCTTCAGGTCCTGAGCCGGAGC TCTACGCCTCAGTGTGTGCCCAGACCCGCAGAGCCCGGGCTTCCTTTCCAGACCAGGCCT ACGCCAACAGCCAGCCTGCACCCAGCTGAGATGGAGGGCCTGGCACACTGGGGCACGCAT CTCCCCCACCTCCTCTGTTGCAGGGGTTACTGCTACCCTGTCTGAGGTGTGACTGTTTTC CAACCCCCCCTGAAGACAAGCAGCCATTGCCCAGTCACAGGGGGGGTGTTCCCTTAACTT CTTTTCTGAGTTGTGACCGACCCATCTCAGAGGAACGCCAGGCCCCCAGCTTCTTGACAA TGGAGGAAGCAAAGGCAGTGGCCCCCTCCCCACCCCTTTTTTTTCATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 535-711, - strand, RNAz p=0.696897 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 535-711, - strand, RNAz p=0.696897 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 11-131, gnl|bosTau2|chr8 (28394732-28394611) | |
| 11-131, gnl|canFam2|chr11 (55220052-55220357) | |
| 11-131, gnl|dasNov1|scaffold_304182 (1004-694) | |
| 11-131, gnl|echTel1|scaffold_159781 (1348-1672) | |
| 11-131, gnl|hg17|chr9 (35640781-35641091) | |
| 11-131, gnl|Hg17|chr9 (35640936-35640816) | |
| 11-131, gnl|loxAfr1|scaffold_10608 (52716-53018) | |
| 11-131, gnl|mm7|chr4 (43497388-43497680) | |
| 11-131, gnl|Mm7|chr4 (43497525-43497406) | |
| 11-131, gnl|panTro1|chr11 (36200703-36201013) | |
| 11-131, gnl|rheMac2|chr15 (41874292-41873981) | |
| 11-131, gnl|rn3|chr5 (59965074-59965349) | |
| 198-336, gnl|bosTau2|chr8 (28394429-28394291) | |
| 198-336, gnl|canFam2|chr11 (55219448-55219940) | |
| 198-336, gnl|echTel1|scaffold_159781 (744-1243) | |
| 198-336, gnl|hg17|chr9 (35640184-35640670) | |
| 198-336, gnl|Hg17|chr9 (35640635-35640497) | |
| 198-336, gnl|loxAfr1|scaffold_10608 (52114-52599) | |
| 198-336, gnl|mm7|chr4 (43496756-43497265) | |
| 198-336, gnl|Mm7|chr4 (43497231-43497090) | |
| 198-336, gnl|panTro1|chr11 (36200106-36200592) | |
| 198-336, gnl|rheMac2|chr15 (41874889-41874403) | |
| 198-336, gnl|rn3|chr5 (59964452-59964954) | |
| 455-711, gnl|bosTau2|chr8 (28393907-28393652) | |
| 455-711, gnl|canFam2|chr11 (55218650-55219447) | |
| 455-711, gnl|echTel1|scaffold_159781 (6-743) | |
| 455-711, gnl|hg17|chr9 (35639441-35640183) | |
| 455-711, gnl|Hg17|chr9 (35640079-35639823) | |
| 455-711, gnl|loxAfr1|scaffold_10608 (51352-52113) | |
| 455-711, gnl|mm7|chr4 (43496020-43496755) | |
| 455-711, gnl|Mm7|chr4 (43496663-43496380) | |
| 455-711, gnl|oryCun1|scaffold_214019 (59772-59058) | |
| 455-711, gnl|panTro1|chr11 (36199363-36200105) | |
| 455-711, gnl|rheMac2|chr15 (41875633-41874890) | |
| 455-711, gnl|rn3|chr5 (59963697-59964451) | |
| 737-941, gnl|bosTau2|chr8 (28393661-28393456) | |
| 737-941, gnl|canFam2|chr11 (55218650-55219447) | |
| 737-941, gnl|echTel1|scaffold_159781 (6-743) | |
| 737-941, gnl|hg17|chr9 (35639441-35640183) | |
| 737-941, gnl|Hg17|chr9 (35639832-35639629) | |
| 737-941, gnl|loxAfr1|scaffold_10608 (51352-52113) | |
| 737-941, gnl|mm7|chr4 (43496020-43496755) | |
| 737-941, gnl|Mm7|chr4 (43496406-43496211) | |
| 737-941, gnl|oryCun1|scaffold_214019 (59772-59058) | |
| 737-941, gnl|panTro1|chr11 (36199363-36200105) | |
| 737-941, gnl|rheMac2|chr15 (41875633-41874890) | |
| 737-941, gnl|rn3|chr5 (59963697-59964451) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-131, gnl|bosTau2|chr8 (28394732-28394611) | |
| 11-131, gnl|canFam2|chr11 (55220052-55220357) | |
| 11-131, gnl|dasNov1|scaffold_304182 (1004-694) | |
| 11-131, gnl|echTel1|scaffold_159781 (1348-1672) | |
| 11-131, gnl|hg17|chr9 (35640781-35641091) | |
| 11-131, gnl|Hg17|chr9 (35640936-35640816) | |
| 11-131, gnl|loxAfr1|scaffold_10608 (52716-53018) | |
| 11-131, gnl|mm7|chr4 (43497388-43497680) | |
| 11-131, gnl|Mm7|chr4 (43497525-43497406) | |
| 11-131, gnl|panTro1|chr11 (36200703-36201013) | |
| 11-131, gnl|rheMac2|chr15 (41874292-41873981) | |
| 11-131, gnl|rn3|chr5 (59965074-59965349) | |
| 198-336, gnl|bosTau2|chr8 (28394429-28394291) | |
| 198-336, gnl|canFam2|chr11 (55219448-55219940) | |
| 198-336, gnl|echTel1|scaffold_159781 (744-1243) | |
| 198-336, gnl|hg17|chr9 (35640184-35640670) | |
| 198-336, gnl|Hg17|chr9 (35640635-35640497) | |
| 198-336, gnl|loxAfr1|scaffold_10608 (52114-52599) | |
| 198-336, gnl|mm7|chr4 (43496756-43497265) | |
| 198-336, gnl|Mm7|chr4 (43497231-43497090) | |
| 198-336, gnl|panTro1|chr11 (36200106-36200592) | |
| 198-336, gnl|rheMac2|chr15 (41874889-41874403) | |
| 198-336, gnl|rn3|chr5 (59964452-59964954) | |
| 455-711, gnl|bosTau2|chr8 (28393907-28393652) | |
| 455-711, gnl|canFam2|chr11 (55218650-55219447) | |
| 455-711, gnl|echTel1|scaffold_159781 (6-743) | |
| 455-711, gnl|hg17|chr9 (35639441-35640183) | |
| 455-711, gnl|Hg17|chr9 (35640079-35639823) | |
| 455-711, gnl|loxAfr1|scaffold_10608 (51352-52113) | |
| 455-711, gnl|mm7|chr4 (43496020-43496755) | |
| 455-711, gnl|Mm7|chr4 (43496663-43496380) | |
| 455-711, gnl|oryCun1|scaffold_214019 (59772-59058) | |
| 455-711, gnl|panTro1|chr11 (36199363-36200105) | |
| 455-711, gnl|rheMac2|chr15 (41875633-41874890) | |
| 455-711, gnl|rn3|chr5 (59963697-59964451) | |
| 737-941, gnl|bosTau2|chr8 (28393661-28393456) | |
| 737-941, gnl|canFam2|chr11 (55218650-55219447) | |
| 737-941, gnl|echTel1|scaffold_159781 (6-743) | |
| 737-941, gnl|hg17|chr9 (35639441-35640183) | |
| 737-941, gnl|Hg17|chr9 (35639832-35639629) | |
| 737-941, gnl|loxAfr1|scaffold_10608 (51352-52113) | |
| 737-941, gnl|mm7|chr4 (43496020-43496755) | |
| 737-941, gnl|Mm7|chr4 (43496406-43496211) | |
| 737-941, gnl|oryCun1|scaffold_214019 (59772-59058) | |
| 737-941, gnl|panTro1|chr11 (36199363-36200105) | |
| 737-941, gnl|rheMac2|chr15 (41875633-41874890) | |
| 737-941, gnl|rn3|chr5 (59963697-59964451) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fty (0.879198) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.879198) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| med (0.116252) |