Ss1.1-Thy1-THY010057F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTCAATAGTCGCGGGCTACTTGAACTGCAGGAACAGCTGCCGCTCCGGCGGGCTGCTC GCTTCATTCCGGGGGCGTCCTTGACCCTGCACGCCCGGCAGCGCCTGCCTCCGGCTTTTG CAACCTCCTTGGTCCTGCACGATCCTGAGCAGGCGGGCGGGCAGGCTGGCCCGGGCTGTG GCGGGTAGGTAGGGCAGGAGTGTTCCTCGGCGGGTCGGCGGGACGCAGTGCACGCTGCTT GGCGCCGCAGGCTGATCCCGTCGCGCCCCCGGGAGCAGTGATGTTGGGCAGCTCCGCGCC CGGGCCTGTGGCCCGCGAGGCGGGCTCGGCGTTGCTAACATTGCAGCAGACGGCGCTCCA AGAGGACCAAGAGAACATCAACCCCGAGAAGGCTGCGGCCGCCCAGCAGCCCCGGACCCG GGCTGGGCTGGCGGTACTGAAGGCCGGGAACTCACGGGGTCCAGCGCTGCAGCAGAGGCC TAAGACGCGACGGGTTGCGCCTCTTAAGGATCTTCCTATAAATGATGAGCATGTCACTGT TCCTCCTTGGAAAGCAAACAGTAAACAACCTGCATTTACCATTCATGTGGATGAAGCAGA AGAAGAGACTCAAAAGAGGCCAGCTGAATCTAAAAAACCAGAAAGTGAAGATGTCCTGGC TTTTAATTCAGCTGTTACTTTACCTGGACCAAGAAAACCACTGGTACCTCTTGATTACCC AATGGATGGTAGTTTTGAGTCACCACATACTATGGACATGTCAATTGTATTGGAAGATGA AAAGCCAGTGAGTGTTAATGAAGTTCCAGACTACCATGAGGACATTCACACATACCTTAG GGAAATGGAGGTTAAATGTAAGCCTAAAGTGGGTTACATGAAGAAACAGCCAGACATTAC TAACAGTATGAGGGCTATCCTCGTGGACTGGTTAGTTGAAGTAGGAGAAGAATATAAACT ACAGAATGAGACCCTGCATTTGGCTGTGAACTACATTGATAGGTTTCTTTCATCGATGTC TGTGTTGAGAGGAAAACTTCAGCTTGTGGGCACTGCTGCTATGCTGTTGGCCTCAAAATT TGAAGAAATATATCCCCCAGAAGTAGCGGAGTTTGTATACATTACAGATGACACTTATAC TAAGAAACAAGTTTTGAGAATGGAGCACCTCGTTTTGAAAGTCCTTGCTTTTGACTTAGC TGCACCAACAATAAATCAGTTTCTTACCCAGTACTTTCTGCACCAGCAGTCTGCAAACTG CAAAGTTGAAAGTTTAGCCATGTTTTTGGGAGAGTTAAGTTTGATAGATGCTGACCCGTA CCTAAAGTATTTGCCATCAGTTACTGCTGCAGCAGCCTTTCATTTAGCACTCTACACAGT CACGGGACAAAGCTGGCCTGAATCATTAGTACAAAAGACTGGATATACGCTGGAAACGCT TAAGCCTTGTCTCCTGGACCTTCACCAGACCTACCTCAGAGCACCACAGCATGCACAACA GTCAATAAGAGAGAAATACAAAAATTCCAAGTATCATGGTGTTTCTCTCCTCAACCCACC AGAGACACTAAATATTTAACAGTGAAAGACTGCCTTTGTTTTCTAAGATGTAAATCACTC TAAGTATATGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTCAATAGTCGCGGGCTACTTGAACTGCAGGAACAGCTGCCGCTCCGGCGGGCTGCTC GCTTCATTCCGGGGGCGTCCTTGACCCTGCACGCCCGGCAGCGCCTGCCTCCGGCTTTTG CAACCTCCTTGGTCCTGCACGATCCTGAGCAGGCGGGCGGGCAGGCTGGCCCGGGCTGTG GCGGGTAGGTAGGGCAGGAGTGTTCCTCGGCGGGTCGGCGGGACGCAGTGCACGCTGCTT GGCGCCGCAGGCTGATCCCGTCGCGCCCCCGGGAGCAGTGATGTTGGGCAGCTCCGCGCC CGGGCCTGTGGCCCGCGAGGCGGGCTCGGCGTTGCTAACATTGCAGCAGACGGCGCTCCA AGAGGACCAAGAGAACATCAACCCCGAGAAGGCTGCGGCCGCCCAGCAGCCCCGGACCCG GGCTGGGCTGGCGGTACTGAAGGCCGGGAACTCACGGGGTCCAGCGCTGCAGCAGAGGCC TAAGACGCGACGGGTTGCGCCTCTTAAGGATCTTCCTATAAATGATGAGCATGTCACTGT TCCTCCTTGGAAAGCAAACAGTAAACAACCTGCATTTACCATTCATGTGGATGAAGCAGA AGAAGAGACTCAAAAGAGGCCAGCTGAATCTAAAAAACCAGAAAGTGAAGATGTCCTGGC TTTTAATTCAGCTGTTACTTTACCTGGACCAAGAAAACCACTGGTACCTCTTGATTACCC AATGGATGGTAGTTTTGAGTCACCACATACTATGGACATGTCAATTGTATTGGAAGATGA AAAGCCAGTGAGTGTTAATGAAGTTCCAGACTACCATGAGGACATTCACACATACCTTAG GGAAATGGAGGTTAAATGTAAGCCTAAAGTGGGTTACATGAAGAAACAGCCAGACATTAC TAACAGTATGAGGGCTATCCTCGTGGACTGGTTAGTTGAAGTAGGAGAAGAATATAAACT ACAGAATGAGACCCTGCATTTGGCTGTGAACTACATTGATAGGTTTCTTTCATCGATGTC TGTGTTGAGAGGAAAACTTCAGCTTGTGGGCACTGCTGCTATGCTGTTGGCCTCAAAATT TGAAGAAATATATCCCCCAGAAGTAGCGGAGTTTGTATACATTACAGATGACACTTATAC TAAGAAACAAGTTTTGAGAATGGAGCACCTCGTTTTGAAAGTCCTTGCTTTTGACTTAGC TGCACCAACAATAAATCAGTTTCTTACCCAGTACTTTCTGCACCAGCAGTCTGCAAACTG CAAAGTTGAAAGTTTAGCCATGTTTTTGGGAGAGTTAAGTTTGATAGATGCTGACCCGTA CCTAAAGTATTTGCCATCAGTTACTGCTGCAGCAGCCTTTCATTTAGCACTCTACACAGT CACGGGACAAAGCTGGCCTGAATCATTAGTACAAAAGACTGGATATACGCTGGAAACGCT TAAGCCTTGTCTCCTGGACCTTCACCAGACCTACCTCAGAGCACCACAGCATGCACAACA GTCAATAAGAGAGAAATACAAAAATTCCAAGTATCATGGTGTTTCTCTCCTCAACCCACC AGAGACACTAAATATTTAACAGTGAAAGACTGCCTTTGTTTTCTAAGATGTAAATCACTC TAAGTATATGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 22-1313, gnl|bosTau2|chr28 (16686686-16685453) | |
| 22-1313, gnl|Hg17|chr4 (123102670-123098132) | |
| 1396-1533, gnl|bosTau2|chr6 (868895-869032) | |
| 1396-1533, gnl|canFam2|chr19 (21331854-21331737) | |
| 1396-1533, gnl|danRer3|chr10 (32206881-32206998) | |
| 1396-1533, gnl|dasNov1|scaffold_4567 (6440-6554) | |
| 1396-1533, gnl|echTel1|scaffold_301262 (46491-46608) | |
| 1396-1533, gnl|fr1|chrUn (69228037-69228154) | |
| 1396-1533, gnl|galGal2|chr4 (54474137-54474020) | |
| 1396-1533, gnl|hg17|chr4 (123096800-123096917) | |
| 1396-1533, gnl|Hg17|chr4 (123096938-123096801) | |
| 1396-1533, gnl|loxAfr1|scaffold_923 (67023-66906) | |
| 1396-1533, gnl|mm7|chr3 (36377320-36377435) | |
| 1396-1533, gnl|Mm7|chr3 (36377456-36377319) | |
| 1396-1533, gnl|monDom2|scaffold_32 (5523416-5523301) | |
| 1396-1533, gnl|oryCun1|scaffold_200166 (3793-3679) | |
| 1396-1533, gnl|panTro1|chr3 (139931360-139931477) | |
| 1396-1533, gnl|rheMac2|chr5 (114186002-114186119) | |
| 1396-1533, gnl|rn3|chr2 (123008392-123008507) | |
| 1396-1533, gnl|tetNig1|chr20 (1900206-1900323) | |
| 1396-1533, gnl|xenTro1|scaffold_1082 (328510-328395) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-1313, gnl|bosTau2|chr28 (16686686-16685453) | |
| 22-1313, gnl|Hg17|chr4 (123102670-123098132) | |
| 1396-1533, gnl|bosTau2|chr6 (868895-869032) | |
| 1396-1533, gnl|canFam2|chr19 (21331854-21331737) | |
| 1396-1533, gnl|danRer3|chr10 (32206881-32206998) | |
| 1396-1533, gnl|dasNov1|scaffold_4567 (6440-6554) | |
| 1396-1533, gnl|echTel1|scaffold_301262 (46491-46608) | |
| 1396-1533, gnl|fr1|chrUn (69228037-69228154) | |
| 1396-1533, gnl|galGal2|chr4 (54474137-54474020) | |
| 1396-1533, gnl|hg17|chr4 (123096800-123096917) | |
| 1396-1533, gnl|Hg17|chr4 (123096938-123096801) | |
| 1396-1533, gnl|loxAfr1|scaffold_923 (67023-66906) | |
| 1396-1533, gnl|mm7|chr3 (36377320-36377435) | |
| 1396-1533, gnl|Mm7|chr3 (36377456-36377319) | |
| 1396-1533, gnl|monDom2|scaffold_32 (5523416-5523301) | |
| 1396-1533, gnl|oryCun1|scaffold_200166 (3793-3679) | |
| 1396-1533, gnl|panTro1|chr3 (139931360-139931477) | |
| 1396-1533, gnl|rheMac2|chr5 (114186002-114186119) | |
| 1396-1533, gnl|rn3|chr2 (123008392-123008507) | |
| 1396-1533, gnl|tetNig1|chr20 (1900206-1900323) | |
| 1396-1533, gnl|xenTro1|scaffold_1082 (328510-328395) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| ill (0.351185) | |
| eru (0.240096) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| eye (0.170503) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ecc (0.115035) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| eru (0.240096) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| eye (0.170503) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ecc (0.115035) |