Ss1.1-Thy1-THY010057F05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGTCCGTAGAGCCTTTCCCCGCCAGCGCCCTCGCTCTTTGGCTCCTGGAGTCGGTGTG GTAGTCTTCCCACGCTGAGGCCGTCTTGGAAGGAGGGAGCTGCTCTGTGCCTCCCGGATA CCTCTACCTCATCCGTTGGTGTGTCCCTGATGGTGAGGCAGGCTCTGGATTCTTAGAACC CTGAAGCGAATTTAAGAAGATTTTGTTCATGTGTCTGGCATAGAAGATGAATTCTTCCTC CTCCACCATGAACGAAGAACCCGATGCTCTCTCCGTGGTTAACCAGCTCCGGGATTTAGC AGCAGATCCATTAAATCGAAGAGCCATTGTCCAGGATCAGGGATGTCTGCCTGGCCTTAT TTTATTTATGGACCATCCCAACCCCCCTGTTGTTCACTCAGCTTTGCTTGCTCTTCGATA CTTGGCAGAGTGCCGTGCTAACAGAGAAAAGATGAAAGGAGAACTGGGTATGATGTTAAG CTTGCAAAATGTTATACAAAAGACTACAACTCCAGGAGAAACAAAACTGCTGGCCTCTGA AATCTATGACATTCTTCAATCTTCTAATATGGCAGATGGTGATAGTTTCAATGAAATGAA TTCACGTCGAAGGAAAGCTCAGTTTTTTCTGGGAACCACAAACAAACGTGCCAAAACAGT GGTTTTGCATATAGATGGTCTTGATGATACGTCTCGGAGAAATCTATGTGAAGAGGCTTT GTTAAAAATTAAAGGTGTTATTAGCTTTACTTTTCAAATGGCCGTTCAGAGATGTGTGGT GAGAATCCGTTCAGATCTGAAAGCAGAGGCTTTGGCATCAGCAATAGCATCAACCAAGGT TATGAAGGCTCAGCAAGTTGTGAAAAGTGAAAGTGGAGAAGAGATGCTGGTCCCATTCCA AGACACACCTGTGGAAGTAGAACAGAATACAGAGCTGCCCGACTACCTGCCTGAGGATGA GAGTCCCACAAAGGAGCAGGACAAAGCAGTGTCCCGGGTGGGCTCCCACCCAGAAGGGGG GGCCAGCTGGCTGAGCACAGCTGCAAACTTTTTATCCAGATCGTTTTACTGGTGACTTCA CTTTGGGGCTCAAGGACTGTGTGAACGAACAAGGGGCCAGTTTTCCATTGTTGTGGTGAA CTGTCAAGTGCAATTTGCAATAAGTTATCATGAAAAGTTTCTAGATTACAAGATTGAGTA TGCTGCATCTTACATTTTATTGGACATTTTACCCCACTAAGTGGTAAAAAGGACAGAGGC TACAGGTAGAGTTACTTTGTTTATGAAGGTATTTTGGTTTTGTTTTCCTTTAATTGCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGTCCGTAGAGCCTTTCCCCGCCAGCGCCCTCGCTCTTTGGCTCCTGGAGTCGGTGTG GTAGTCTTCCCACGCTGAGGCCGTCTTGGAAGGAGGGAGCTGCTCTGTGCCTCCCGGATA CCTCTACCTCATCCGTTGGTGTGTCCCTGATGGTGAGGCAGGCTCTGGATTCTTAGAACC CTGAAGCGAATTTAAGAAGATTTTGTTCATGTGTCTGGCATAGAAGATGAATTCTTCCTC CTCCACCATGAACGAAGAACCCGATGCTCTCTCCGTGGTTAACCAGCTCCGGGATTTAGC AGCAGATCCATTAAATCGAAGAGCCATTGTCCAGGATCAGGGATGTCTGCCTGGCCTTAT TTTATTTATGGACCATCCCAACCCCCCTGTTGTTCACTCAGCTTTGCTTGCTCTTCGATA CTTGGCAGAGTGCCGTGCTAACAGAGAAAAGATGAAAGGAGAACTGGGTATGATGTTAAG CTTGCAAAATGTTATACAAAAGACTACAACTCCAGGAGAAACAAAACTGCTGGCCTCTGA AATCTATGACATTCTTCAATCTTCTAATATGGCAGATGGTGATAGTTTCAATGAAATGAA TTCACGTCGAAGGAAAGCTCAGTTTTTTCTGGGAACCACAAACAAACGTGCCAAAACAGT GGTTTTGCATATAGATGGTCTTGATGATACGTCTCGGAGAAATCTATGTGAAGAGGCTTT GTTAAAAATTAAAGGTGTTATTAGCTTTACTTTTCAAATGGCCGTTCAGAGATGTGTGGT GAGAATCCGTTCAGATCTGAAAGCAGAGGCTTTGGCATCAGCAATAGCATCAACCAAGGT TATGAAGGCTCAGCAAGTTGTGAAAAGTGAAAGTGGAGAAGAGATGCTGGTCCCATTCCA AGACACACCTGTGGAAGTAGAACAGAATACAGAGCTGCCCGACTACCTGCCTGAGGATGA GAGTCCCACAAAGGAGCAGGACAAAGCAGTGTCCCGGGTGGGCTCCCACCCAGAAGGGGG GGCCAGCTGGCTGAGCACAGCTGCAAACTTTTTATCCAGATCGTTTTACTGGTGACTTCA CTTTGGGGCTCAAGGACTGTGTGAACGAACAAGGGGCCAGTTTTCCATTGTTGTGGTGAA CTGTCAAGTGCAATTTGCAATAAGTTATCATGAAAAGTTTCTAGATTACAAGATTGAGTA TGCTGCATCTTACATTTTATTGGACATTTTACCCCACTAAGTGGTAAAAAGGACAGAGGC TACAGGTAGAGTTACTTTGTTTATGAAGGTATTTTGGTTTTGTTTTCCTTTAATTGCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 921-1080, + strand, RNAz p=0.779298 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 921-1080, + strand, RNAz p=0.779298 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC011607, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 188-408, gnl|bosTau2|chr18 (144189-144410) | |
| 188-408, gnl|canFam2|chr29 (18311847-18312022) | |
| 188-408, gnl|danRer3|chr23 (47267892-47268060) | |
| 188-408, gnl|dasNov1|scaffold_69770 (3963-3810) | |
| 188-408, gnl|echTel1|scaffold_210404 (2842-3017) | |
| 188-408, gnl|fr1|chrUn (87770166-87769983) | |
| 188-408, gnl|galGal2|chrUn (62445633-62445463) | |
| 188-408, gnl|hg17|chr8 (66702001-66702176) | |
| 188-408, gnl|Hg17|chr8 (66702223-66702006) | |
| 188-408, gnl|mm7|chr3 (18889486-18889661) | |
| 188-408, gnl|Mm7|chr3 (18889711-18889491) | |
| 188-408, gnl|monDom2|scaffold_4 (96118304-96118131) | |
| 188-408, gnl|oryCun1|scaffold_211173 (78407-78232) | |
| 188-408, gnl|panTro1|chr7 (68701084-68701259) | |
| 188-408, gnl|rheMac2|chr8 (68239434-68239609) | |
| 188-408, gnl|rn3|chr2 (104211041-104211216) | |
| 188-408, gnl|tetNig1|chr6 (2532771-2532601) | |
| 188-408, gnl|xenTro1|scaffold_777 (274487-274662) | |
| 499-691, gnl|bosTau2|chr18 (155142-155334) | |
| 499-691, gnl|canFam2|chr29 (18292477-18292665) | |
| 499-691, gnl|danRer3|chr24 (23067010-23067203) | |
| 499-691, gnl|dasNov1|scaffold_15738 (15960-15771) | |
| 499-691, gnl|echTel1|scaffold_246165 (3180-2992) | |
| 499-691, gnl|fr1|chrUn (87772340-87772152) | |
| 499-691, gnl|galGal2|chrUn (14159491-14159303) | |
| 499-691, gnl|hg17|chr4 (139760396-139760584) | |
| 499-691, gnl|Hg17|chr8 (66688225-66688033) | |
| 499-691, gnl|mm7|chr16 (35506242-35506396) | |
| 499-691, gnl|Mm7|chr3 (18876540-18876348) | |
| 499-691, gnl|monDom2|scaffold_4 (96186089-96185903) | |
| 499-691, gnl|oryCun1|scaffold_152105 (13468-13281) | |
| 499-691, gnl|panTro1|chr3_random (16004725-16004537) | |
| 499-691, gnl|rheMac2|chr5 (130941486-130941675) | |
| 499-691, gnl|rn3|chr3 (120364785-120364966) | |
| 499-691, gnl|tetNig1|chr15_random (11186-11372) | |
| 499-691, gnl|xenTro1|scaffold_777 (269833-270021) | |
| 882-1311, gnl|bosTau2|chr18 (161605-162034) | |
| 882-1311, gnl|Hg17|chr8 (66679376-66678948) | |
| 882-1311, gnl|Mm7|chr3 (18866243-18865825) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 188-408, gnl|bosTau2|chr18 (144189-144410) | |
| 188-408, gnl|canFam2|chr29 (18311847-18312022) | |
| 188-408, gnl|danRer3|chr23 (47267892-47268060) | |
| 188-408, gnl|dasNov1|scaffold_69770 (3963-3810) | |
| 188-408, gnl|echTel1|scaffold_210404 (2842-3017) | |
| 188-408, gnl|fr1|chrUn (87770166-87769983) | |
| 188-408, gnl|galGal2|chrUn (62445633-62445463) | |
| 188-408, gnl|hg17|chr8 (66702001-66702176) | |
| 188-408, gnl|Hg17|chr8 (66702223-66702006) | |
| 188-408, gnl|mm7|chr3 (18889486-18889661) | |
| 188-408, gnl|Mm7|chr3 (18889711-18889491) | |
| 188-408, gnl|monDom2|scaffold_4 (96118304-96118131) | |
| 188-408, gnl|oryCun1|scaffold_211173 (78407-78232) | |
| 188-408, gnl|panTro1|chr7 (68701084-68701259) | |
| 188-408, gnl|rheMac2|chr8 (68239434-68239609) | |
| 188-408, gnl|rn3|chr2 (104211041-104211216) | |
| 188-408, gnl|tetNig1|chr6 (2532771-2532601) | |
| 188-408, gnl|xenTro1|scaffold_777 (274487-274662) | |
| 499-691, gnl|bosTau2|chr18 (155142-155334) | |
| 499-691, gnl|canFam2|chr29 (18292477-18292665) | |
| 499-691, gnl|danRer3|chr24 (23067010-23067203) | |
| 499-691, gnl|dasNov1|scaffold_15738 (15960-15771) | |
| 499-691, gnl|echTel1|scaffold_246165 (3180-2992) | |
| 499-691, gnl|fr1|chrUn (87772340-87772152) | |
| 499-691, gnl|galGal2|chrUn (14159491-14159303) | |
| 499-691, gnl|hg17|chr4 (139760396-139760584) | |
| 499-691, gnl|Hg17|chr8 (66688225-66688033) | |
| 499-691, gnl|mm7|chr16 (35506242-35506396) | |
| 499-691, gnl|Mm7|chr3 (18876540-18876348) | |
| 499-691, gnl|monDom2|scaffold_4 (96186089-96185903) | |
| 499-691, gnl|oryCun1|scaffold_152105 (13468-13281) | |
| 499-691, gnl|panTro1|chr3_random (16004725-16004537) | |
| 499-691, gnl|rheMac2|chr5 (130941486-130941675) | |
| 499-691, gnl|rn3|chr3 (120364785-120364966) | |
| 499-691, gnl|tetNig1|chr15_random (11186-11372) | |
| 499-691, gnl|xenTro1|scaffold_777 (269833-270021) | |
| 882-1311, gnl|bosTau2|chr18 (161605-162034) | |
| 882-1311, gnl|Hg17|chr8 (66679376-66678948) | |
| 882-1311, gnl|Mm7|chr3 (18866243-18865825) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) |