Ss1.1-Thy1-THY010057G07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTTGTTGTCGTTCGGTGTTTGGGTTCACTTCATGTAGTAGGTGCGCGGCGGCTGGCTG GGTGGAAAGGTTTGGTCCGAGGAGCCGCAGAGGGGCGACTCGAGCTTAAAGCCGGGCAGA AAAATGGACGTTCTTAAGTCCGAGATCCTCCGGAAGCGGCAGTTGGTGGAAGACAGGAAC CTGTTGGTGGAAAATAAAAAATACTTCAAGCGTAGTGAACTTGCAAAAAAAGAAGAGGAA GCATATTTTGAAAGATGTGGCTACAAGATACAGCCAAAAGAGGAGGACCAGAAACCATTA ACTTCATCAAATCCAGTATTAGAACTTGAACTGGCAGAGGAAAAATTACCCATGACTCTT TCTCGGCAAGAGGTTATCAGAAGATTGAGAGAAAGAGGAGAACCAATCAGACTATTTGGA GAAACTGATTATGATGCTTTTCAACGTTTAAGAAAGATAGAGATCCTCACACCGGAAGTT AACAAGGGGTTGAGGAATGATCTGAAAGCAGCTTTGGATAAGATCGATCAGCAGTATCTC AATGAACTTGTGGGTGGCCAAGAACCTGGGGAGGAAGACACCCAGAATGATTTGAAAGTT CATGAAGAAAACACCACAATTGAGGAGTTAGAGGCCCTGGGAGAGTCTTTAGGAAAAGGT GATGATCATAAAGACATGGACATCATTACCAAATTCCTTAAGTTTCTTCTTGGTGTTTGG GCTAAGGAGTTGAATGCCAGAGAAGATTATGTAAAAAGGAGTGTGCAGGGTAAACTGAAC AGTGCTACTCAAAAACAGACTGAGTCCTATCTCAGACCCCTTTTCAGAAAGCTCCGGAAG AGGAATCTTCCTGCTGATATTAAAGAATCCATAACAGATATTATTAAATTCATGTTGCAG AGGGAATATGTGAAGGCTAATGATGCTTACCTTCAGATGGCCATTGGAAATGCCCCTTGG CCCATTGGTGTCACTATGGTTGGTATCCACGCCAGAACTGGTAGGGAAAAGATTTTTTCC AAGCATGTTGCACATGTTTTAAATGATGAAACACAGCGGAAATATATTCAGGGATTAAAG AGGTTGATGACCATTTGCCAGAAGCACTTTCCTACAGATCCGTCAAAATGTGTGGAATAC AATGCACTATGAGACCTGTATGTGATGTGTAAATATCAACAAGAAACTTAAGGAAGCGTG GCATGGACTTCCGGAGTTACCAGCGGGAATGAGGAAAGAAGACAAAAGGAGTTTCTGGTC TCTGAGTTCTGCCTAATGCAACTTGGTTTTAAGAACTGTATTGGCTCCCATGTCATATCT GACTGCAGAGTGATTTTTGTGTCTTGCTTTTATTTTAAATAGTTGAAAATTTAAGTTCTA AAGACTTTTTCTTCATAATTTGAATGTGTAGACAGCAGTCCCAGGAGGTGTTTTAAAATG ACTTTTCCCTTCCAGATCTGAAAGTTAGAAGATTAAAAAGGAACTTTTGAGGATGGACTT AATTGTCTTTGTAAAATATAATTTTCACACTGACTTTTATGTAGTATTTATAGAAAAAAT ATTTTTATATTTTTCAACAAAAATACAGAACCATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTTGTTGTCGTTCGGTGTTTGGGTTCACTTCATGTAGTAGGTGCGCGGCGGCTGGCTG GGTGGAAAGGTTTGGTCCGAGGAGCCGCAGAGGGGCGACTCGAGCTTAAAGCCGGGCAGA AAAATGGACGTTCTTAAGTCCGAGATCCTCCGGAAGCGGCAGTTGGTGGAAGACAGGAAC CTGTTGGTGGAAAATAAAAAATACTTCAAGCGTAGTGAACTTGCAAAAAAAGAAGAGGAA GCATATTTTGAAAGATGTGGCTACAAGATACAGCCAAAAGAGGAGGACCAGAAACCATTA ACTTCATCAAATCCAGTATTAGAACTTGAACTGGCAGAGGAAAAATTACCCATGACTCTT TCTCGGCAAGAGGTTATCAGAAGATTGAGAGAAAGAGGAGAACCAATCAGACTATTTGGA GAAACTGATTATGATGCTTTTCAACGTTTAAGAAAGATAGAGATCCTCACACCGGAAGTT AACAAGGGGTTGAGGAATGATCTGAAAGCAGCTTTGGATAAGATCGATCAGCAGTATCTC AATGAACTTGTGGGTGGCCAAGAACCTGGGGAGGAAGACACCCAGAATGATTTGAAAGTT CATGAAGAAAACACCACAATTGAGGAGTTAGAGGCCCTGGGAGAGTCTTTAGGAAAAGGT GATGATCATAAAGACATGGACATCATTACCAAATTCCTTAAGTTTCTTCTTGGTGTTTGG GCTAAGGAGTTGAATGCCAGAGAAGATTATGTAAAAAGGAGTGTGCAGGGTAAACTGAAC AGTGCTACTCAAAAACAGACTGAGTCCTATCTCAGACCCCTTTTCAGAAAGCTCCGGAAG AGGAATCTTCCTGCTGATATTAAAGAATCCATAACAGATATTATTAAATTCATGTTGCAG AGGGAATATGTGAAGGCTAATGATGCTTACCTTCAGATGGCCATTGGAAATGCCCCTTGG CCCATTGGTGTCACTATGGTTGGTATCCACGCCAGAACTGGTAGGGAAAAGATTTTTTCC AAGCATGTTGCACATGTTTTAAATGATGAAACACAGCGGAAATATATTCAGGGATTAAAG AGGTTGATGACCATTTGCCAGAAGCACTTTCCTACAGATCCGTCAAAATGTGTGGAATAC AATGCACTATGAGACCTGTATGTGATGTGTAAATATCAACAAGAAACTTAAGGAAGCGTG GCATGGACTTCCGGAGTTACCAGCGGGAATGAGGAAAGAAGACAAAAGGAGTTTCTGGTC TCTGAGTTCTGCCTAATGCAACTTGGTTTTAAGAACTGTATTGGCTCCCATGTCATATCT GACTGCAGAGTGATTTTTGTGTCTTGCTTTTATTTTAAATAGTTGAAAATTTAAGTTCTA AAGACTTTTTCTTCATAATTTGAATGTGTAGACAGCAGTCCCAGGAGGTGTTTTAAAATG ACTTTTCCCTTCCAGATCTGAAAGTTAGAAGATTAAAAAGGAACTTTTGAGGATGGACTT AATTGTCTTTGTAAAATATAATTTTCACACTGACTTTTATGTAGTATTTATAGAAAAAAT ATTTTTATATTTTTCAACAAAAATACAGAACCATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 726-843, - strand, RNAz p=0.606851 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 726-843, - strand, RNAz p=0.606851 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 266-374, gnl|bosTau2|chr13 (16337755-16337863) | |
| 266-374, gnl|Hg17|chr10 (13682248-13682356) | |
| 266-374, gnl|Mm7|chr2 (4562947-4562839) | |
| 485-634, gnl|bosTau2|chr13 (16346093-16346242) | |
| 485-634, gnl|canFam2|chr2 (25733138-25732988) | |
| 485-634, gnl|danRer3|chr18 (6896725-6896864) | |
| 485-634, gnl|dasNov1|scaffold_14905 (19659-19513) | |
| 485-634, gnl|echTel1|scaffold_280567 (2264-2421) | |
| 485-634, gnl|fr1|chrUn (73520994-73521137) | |
| 485-634, gnl|galGal2|chr1 (3892411-3892260) | |
| 485-634, gnl|hg17|chr10 (13691996-13692155) | |
| 485-634, gnl|Hg17|chr10 (13692043-13692192) | |
| 485-634, gnl|mm7|chr2 (4556296-4556159) | |
| 485-634, gnl|Mm7|chr2 (4556269-4556120) | |
| 485-634, gnl|monDom2|scaffold_30 (12871161-12871312) | |
| 485-634, gnl|panTro1|chr8 (14138629-14138788) | |
| 485-634, gnl|rheMac2|chr9 (13875643-13875796) | |
| 485-634, gnl|rn3|chr17 (84763590-84763745) | |
| 485-634, gnl|tetNig1|chr13 (4134658-4134796) | |
| 485-634, gnl|xenTro1|scaffold_6 (2450251-2450409) | |
| 701-843, gnl|bosTau2|chr13 (16349208-16349350) | |
| 701-843, gnl|canFam2|chr2 (25728958-25728841) | |
| 701-843, gnl|danRer3|chr18 (6898495-6898612) | |
| 701-843, gnl|dasNov1|scaffold_14905 (16059-15942) | |
| 701-843, gnl|echTel1|scaffold_280567 (6187-6304) | |
| 701-843, gnl|fr1|chrUn (73521571-73521688) | |
| 701-843, gnl|galGal2|chr1 (3889335-3889218) | |
| 701-843, gnl|hg17|chr10 (13695746-13695863) | |
| 701-843, gnl|Hg17|chr10 (13695745-13695887) | |
| 701-843, gnl|loxAfr1|scaffold_57882 (3155-3035) | |
| 701-843, gnl|mm7|chr2 (4553243-4553126) | |
| 701-843, gnl|Mm7|chr2 (4553242-4553100) | |
| 701-843, gnl|monDom2|scaffold_30 (12875358-12875475) | |
| 701-843, gnl|oryCun1|scaffold_104397 (20-137) | |
| 701-843, gnl|panTro1|chr8 (14142388-14142505) | |
| 701-843, gnl|rheMac2|chr9 (13879371-13879488) | |
| 701-843, gnl|rn3|chr17 (84768484-84768601) | |
| 701-843, gnl|tetNig1|chr13 (4135176-4135293) | |
| 701-843, gnl|xenTro1|scaffold_6 (2451414-2451531) | |
| 1070-1596, gnl|bosTau2|chr13 (16314179-16313642) | |
| 1070-1596, gnl|Hg17|chr10 (13712264-13712793) | |
| 1070-1596, gnl|Mm7|chr2 (4541800-4541283) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 266-374, gnl|bosTau2|chr13 (16337755-16337863) | |
| 266-374, gnl|Hg17|chr10 (13682248-13682356) | |
| 266-374, gnl|Mm7|chr2 (4562947-4562839) | |
| 485-634, gnl|bosTau2|chr13 (16346093-16346242) | |
| 485-634, gnl|canFam2|chr2 (25733138-25732988) | |
| 485-634, gnl|danRer3|chr18 (6896725-6896864) | |
| 485-634, gnl|dasNov1|scaffold_14905 (19659-19513) | |
| 485-634, gnl|echTel1|scaffold_280567 (2264-2421) | |
| 485-634, gnl|fr1|chrUn (73520994-73521137) | |
| 485-634, gnl|galGal2|chr1 (3892411-3892260) | |
| 485-634, gnl|hg17|chr10 (13691996-13692155) | |
| 485-634, gnl|Hg17|chr10 (13692043-13692192) | |
| 485-634, gnl|mm7|chr2 (4556296-4556159) | |
| 485-634, gnl|Mm7|chr2 (4556269-4556120) | |
| 485-634, gnl|monDom2|scaffold_30 (12871161-12871312) | |
| 485-634, gnl|panTro1|chr8 (14138629-14138788) | |
| 485-634, gnl|rheMac2|chr9 (13875643-13875796) | |
| 485-634, gnl|rn3|chr17 (84763590-84763745) | |
| 485-634, gnl|tetNig1|chr13 (4134658-4134796) | |
| 485-634, gnl|xenTro1|scaffold_6 (2450251-2450409) | |
| 701-843, gnl|bosTau2|chr13 (16349208-16349350) | |
| 701-843, gnl|canFam2|chr2 (25728958-25728841) | |
| 701-843, gnl|danRer3|chr18 (6898495-6898612) | |
| 701-843, gnl|dasNov1|scaffold_14905 (16059-15942) | |
| 701-843, gnl|echTel1|scaffold_280567 (6187-6304) | |
| 701-843, gnl|fr1|chrUn (73521571-73521688) | |
| 701-843, gnl|galGal2|chr1 (3889335-3889218) | |
| 701-843, gnl|hg17|chr10 (13695746-13695863) | |
| 701-843, gnl|Hg17|chr10 (13695745-13695887) | |
| 701-843, gnl|loxAfr1|scaffold_57882 (3155-3035) | |
| 701-843, gnl|mm7|chr2 (4553243-4553126) | |
| 701-843, gnl|Mm7|chr2 (4553242-4553100) | |
| 701-843, gnl|monDom2|scaffold_30 (12875358-12875475) | |
| 701-843, gnl|oryCun1|scaffold_104397 (20-137) | |
| 701-843, gnl|panTro1|chr8 (14142388-14142505) | |
| 701-843, gnl|rheMac2|chr9 (13879371-13879488) | |
| 701-843, gnl|rn3|chr17 (84768484-84768601) | |
| 701-843, gnl|tetNig1|chr13 (4135176-4135293) | |
| 701-843, gnl|xenTro1|scaffold_6 (2451414-2451531) | |
| 1070-1596, gnl|bosTau2|chr13 (16314179-16313642) | |
| 1070-1596, gnl|Hg17|chr10 (13712264-13712793) | |
| 1070-1596, gnl|Mm7|chr2 (4541800-4541283) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| vin (0.665115) | |
| sin (0.524843) | |
| cte (0.29274) | |
| ova (0.258264) | |
| sug (0.254582) | |
| thg (0.253582) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| gul (0.177588) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| kid (0.129735) | |
| bla (0.124347) | |
| clu (0.119646) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.665115) | |
| sin (0.524843) | |
| cte (0.29274) | |
| ova (0.258264) | |
| sug (0.254582) | |
| thg (0.253582) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| gul (0.177588) | |
| rec (0.17307) | |
| duo (0.172801) | |
| eye (0.170503) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| kid (0.129735) | |
| bla (0.124347) | |
| clu (0.119646) | |
| jej (0.0989218) | |
| ldo (0.0970026) |