Ss1.1-Thy1-THY010057H11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCACCATGGGAGGCTGGGGGGGGCAGTTAAGGGGCTCCATGCCAACTGTCTGGTGTAA TTACAGCTTCATTGGGAGGTCTCTGCGGCAGGACCCAGAGCAAGATTGTGTGAGAAGCGC TGGGAGAACAAACAAGAGTCCGGTCCTCTGACAGCTGCAAGGGGCTGAGGCTGCCAGGCC CGTGTGTGTGTTCCCACAAGTCCCGCTGTCATCTCTAGAGCTTCTTGTCACTCGGCCTCC AAAAATATACGTCTGCAGCTTTCACTCTCTCTGCCGTTTCTTGATTCCTTTCCAAATCTC TGTGGGGACCCTGGCCTCAGCCCCTTGATGTGGCAGCTCTTCCTCTTCAGGGCAGCTGCT ATTGCCACTTCCCCCGTCCTCAGGGTCAGGCCCGAGTTCCTCAGACTCACCTTCACTCTT GCTGTCCGCCCTGTCCACGGGCAGCCGGGTGCCAGCCACGGGCCTGTTGGGATTTGCAAA CTCTCGCCCTGAATCCACGTCAAAGGGATCGACTTCCTCCTCCTCTGGGTGCTCCTTGGC GAGGGCCAGGAACTCCTGCTCTGCCTGCAACACCTCCTCTGGGCCACTGCAGGCTGCATA CTTGTCCAGGAGCTCGCGGTTCAGATCTAGGAAGCCCTTGCCCCACTTGAACTTCCGCAG CAAAAGGACAGCAAGGTCTGAGAAGCCCAGGATGCAGAAGGTGGCAGCGAAGGCCTCCAC ACAGGACAGCCTGCAGGGCCGGCCATAGTTCACAGGGTTGGCGGCTACCAGGTGGGGTAG GAGCCGCAGGTGGCTCCCCCGCATCTTCCCAAACGGTGTCTCATTCAGTCTGGCCCAGGA GCAGTCGATGACAGCGACCCCAGACTGTGCTACCAACTGTCTGTCTGCAGGAGACACGTA CTGGGAGCCCACGGGGCTGAGTACGAGGCCGCCAAACCTTTGGCCCAGGCGCAGGCAACG CACCAGTCCCAGGCGGGCCAGCTTGCGGCCAGTGCAGCGCCGGGGGTCGCAGTGGCCTAG CTCCCACATGGCCAGCGCGCAAGGCAGCCGCGCCGGGCCCGGGCTGCCCTCGTCCTCGGC CGCCTCTGGCTCCACGGACGCACGCAGCGCGGCGCCCACCTCCTCGGCGAAGGCCTCCAG GGAGCGGCCCGCGGGGCGTCGAGCGTGGCCGTCTTCGGCCCCCGGCCCGCGAGCTGCCCT CCGGCGGCCCATGGCGAGCAGCGGGGTCCTGGGCTCGCGGGCTCACAGCTCCGCGGGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCACCATGGGAGGCTGGGGGGGGCAGTTAAGGGGCTCCATGCCAACTGTCTGGTGTAA TTACAGCTTCATTGGGAGGTCTCTGCGGCAGGACCCAGAGCAAGATTGTGTGAGAAGCGC TGGGAGAACAAACAAGAGTCCGGTCCTCTGACAGCTGCAAGGGGCTGAGGCTGCCAGGCC CGTGTGTGTGTTCCCACAAGTCCCGCTGTCATCTCTAGAGCTTCTTGTCACTCGGCCTCC AAAAATATACGTCTGCAGCTTTCACTCTCTCTGCCGTTTCTTGATTCCTTTCCAAATCTC TGTGGGGACCCTGGCCTCAGCCCCTTGATGTGGCAGCTCTTCCTCTTCAGGGCAGCTGCT ATTGCCACTTCCCCCGTCCTCAGGGTCAGGCCCGAGTTCCTCAGACTCACCTTCACTCTT GCTGTCCGCCCTGTCCACGGGCAGCCGGGTGCCAGCCACGGGCCTGTTGGGATTTGCAAA CTCTCGCCCTGAATCCACGTCAAAGGGATCGACTTCCTCCTCCTCTGGGTGCTCCTTGGC GAGGGCCAGGAACTCCTGCTCTGCCTGCAACACCTCCTCTGGGCCACTGCAGGCTGCATA CTTGTCCAGGAGCTCGCGGTTCAGATCTAGGAAGCCCTTGCCCCACTTGAACTTCCGCAG CAAAAGGACAGCAAGGTCTGAGAAGCCCAGGATGCAGAAGGTGGCAGCGAAGGCCTCCAC ACAGGACAGCCTGCAGGGCCGGCCATAGTTCACAGGGTTGGCGGCTACCAGGTGGGGTAG GAGCCGCAGGTGGCTCCCCCGCATCTTCCCAAACGGTGTCTCATTCAGTCTGGCCCAGGA GCAGTCGATGACAGCGACCCCAGACTGTGCTACCAACTGTCTGTCTGCAGGAGACACGTA CTGGGAGCCCACGGGGCTGAGTACGAGGCCGCCAAACCTTTGGCCCAGGCGCAGGCAACG CACCAGTCCCAGGCGGGCCAGCTTGCGGCCAGTGCAGCGCCGGGGGTCGCAGTGGCCTAG CTCCCACATGGCCAGCGCGCAAGGCAGCCGCGCCGGGCCCGGGCTGCCCTCGTCCTCGGC CGCCTCTGGCTCCACGGACGCACGCAGCGCGGCGCCCACCTCCTCGGCGAAGGCCTCCAG GGAGCGGCCCGCGGGGCGTCGAGCGTGGCCGTCTTCGGCCCCCGGCCCGCGAGCTGCCCT CCGGCGGCCCATGGCGAGCAGCGGGGTCCTGGGCTCGCGGGCTCACAGCTCCGCGGGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 254-628, - strand, RNAz p=0.774471 | |
| 288-405, - strand, RNAz p=0.957145 | |
| 510-615, - strand, RNAz p=0.537574 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 254-628, - strand, RNAz p=0.774471 | |
| 288-405, - strand, RNAz p=0.957145 | |
| 510-615, - strand, RNAz p=0.537574 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC013943, - |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 61-446, gnl|bosTau2|chr25 (714439-714056) | |
| 61-446, gnl|Hg17|chr16 (1339250-1339611) | |
| 235-405, gnl|bosTau2|chr11 (62007246-62007083) | |
| 510-687, gnl|bosTau2|chr25 (713593-713416) | |
| 510-687, gnl|canFam2|chr6 (42461474-42461261) | |
| 510-687, gnl|danRer3|chrNA (20312926-20313103) | |
| 510-687, gnl|dasNov1|scaffold_83418 (1177-973) | |
| 510-687, gnl|echTel1|scaffold_82589 (6-191) | |
| 510-687, gnl|fr1|chrUn (101919126-101919300) | |
| 510-687, gnl|galGal2|chr14 (9440785-9440964) | |
| 510-687, gnl|hg17|chr16 (1340057-1340271) | |
| 510-687, gnl|Hg17|chr16 (1340060-1340237) | |
| 510-687, gnl|mm7|chr17 (23424957-23424755) | |
| 510-687, gnl|Mm7|chr17 (23424952-23424778) | |
| 510-687, gnl|monDom2|scaffold_5 (122904157-122903946) | |
| 510-687, gnl|oryCun1|scaffold_196429 (36839-37005) | |
| 510-687, gnl|panTro1|chr18 (1414645-1414859) | |
| 510-687, gnl|rheMac2|chr20 (1317483-1317697) | |
| 510-687, gnl|rn3|chr10 (14489605-14489400) | |
| 510-687, gnl|tetNig1|chr2 (4706472-4706646) | |
| 510-687, gnl|xenTro1|scaffold_254 (985291-985474) | |
| 881-1101, gnl|bosTau2|chr25 (712466-712246) | |
| 881-1101, gnl|Hg17|chr16 (1341381-1341601) | |
| 881-1101, gnl|Mm7|chr17 (23423754-23423534) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-446, gnl|bosTau2|chr25 (714439-714056) | |
| 61-446, gnl|Hg17|chr16 (1339250-1339611) | |
| 235-405, gnl|bosTau2|chr11 (62007246-62007083) | |
| 510-687, gnl|bosTau2|chr25 (713593-713416) | |
| 510-687, gnl|canFam2|chr6 (42461474-42461261) | |
| 510-687, gnl|danRer3|chrNA (20312926-20313103) | |
| 510-687, gnl|dasNov1|scaffold_83418 (1177-973) | |
| 510-687, gnl|echTel1|scaffold_82589 (6-191) | |
| 510-687, gnl|fr1|chrUn (101919126-101919300) | |
| 510-687, gnl|galGal2|chr14 (9440785-9440964) | |
| 510-687, gnl|hg17|chr16 (1340057-1340271) | |
| 510-687, gnl|Hg17|chr16 (1340060-1340237) | |
| 510-687, gnl|mm7|chr17 (23424957-23424755) | |
| 510-687, gnl|Mm7|chr17 (23424952-23424778) | |
| 510-687, gnl|monDom2|scaffold_5 (122904157-122903946) | |
| 510-687, gnl|oryCun1|scaffold_196429 (36839-37005) | |
| 510-687, gnl|panTro1|chr18 (1414645-1414859) | |
| 510-687, gnl|rheMac2|chr20 (1317483-1317697) | |
| 510-687, gnl|rn3|chr10 (14489605-14489400) | |
| 510-687, gnl|tetNig1|chr2 (4706472-4706646) | |
| 510-687, gnl|xenTro1|scaffold_254 (985291-985474) | |
| 881-1101, gnl|bosTau2|chr25 (712466-712246) | |
| 881-1101, gnl|Hg17|chr16 (1341381-1341601) | |
| 881-1101, gnl|Mm7|chr17 (23423754-23423534) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| hyp (0.285673) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.285673) | |
| mas (0.210305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |