Non-Coding RNA Search

Ss1.1-Thy1-THY010058A12.5

Sequence:


               
               TTGTGGCAGCGAGACCCGCAAATAAAGGGGAGCGCCAGGGCTGCGGCGGGAGGAGGCGCG
CGGGGGCCGGCGGCAGCGCGGTCGGGCGGCCCGGGCAGCGAGCGGCGGCGCGCGGTCGGC
CTATGTGACTGGGCGGCGCCCGCGCGGCCTCCGTCCGGAGAGGATTCAAGATGACCAACG
AGGAACCTCTTCCCAAAAAGGTTCGACTGAGTGAGACAGACTTCAAAGTTATGGCACGAG
ACGAATTGATTCTAAGGTGGAAACAATACGAAGCATACGTGCAAGCTTTGGAGGGCAAGT
ACACAGATCTTAACTCTAATGATGTAACTGGCTTAAGGGAGTCTGAAGAAAAACTAAAGC
AGCAACAGCAAGAATCTGCACGCAGGGAAAACATCCTTGTAATGCGCCTAGCAACCAAGG
AGCAAGAGATGCAAGAGTGTACTACTCAAATCCAGTACCTCAAGCAAGTCCAGCAGCCTA
GCGTTGCCCAACTGAGATCAACAATGGTCGACCCAGCGATCAACTTGTTTTTCCTAAAAA
TGAAAGGTGAACTGGAACAGACTAAAGACAAACTGGAACAAGCCCAAAATGAACTGAGTG
CCTGGAAGTTTACGCCTGATAGCCAAACAGGCAAAAAGTTAATGGCGAAGTGTCGAATGC
TTATCCAGGAGAATCAAGAGCTTGGAAGGCAGCTGTCCCAGGGACGTATTGCACAACTTG
AAGCAGAGTTGGCTTTACAGAAGAAATATAGTGAGGAGCTTAAAAGCAGTCAGGATGAAC
TGAATGACTTCATCATTCAACTTGACGAAGAAGTAGAGGGTATGCAGAGTACCATTCTAG
TCCTTCAACAGCAGCTGAAGGAGACCCGCCAGCAGCTGGCTCAGTACCAACAGCAGCAGT
CTCAAGCCCCAGGCCCGAGCACCAGCAGGACTCCGTCTGAGCCTGGAGGACAGGCAGAGG
CCACAGGGAAAGACTGCAGTCGTCTGGCCAACGGACCAAGTAATGGCAGCTCCTCCCGGC
AGAGGACGTCTGGGTCTGGGTTTCACAGGGAGGGCGACACGACCGAAGATGACTTTCCTC
CTTCTCCGGGGAGCGGGAATAAGGCCTCCAACAGCTCAGAGGAGAGAACTGGCAGAGGAG
GTAGTAGTTACGTAAACCAACTCAGTGCTGGGTATGAAAGCGTAGACTCTCCCACGGGCA
GTGAAAACTCTCTCACACGCCACTCACATGACACAGACTCCAACCCTGACCCTCAAGAGG
AGAAAACCGTGAGTGGGAAAGGTAGCCGAACTGCGGGTTCCCGCCACGTCCAGAATGGCT
TGGACTCAAGTGTAAATGTACAGGGTTCGGTTTTGTAAAAAAAAAAGAAAAGAAAAAAAA
GAAATTCCCAGCAAATTTTTATACAGTGTCATTTAATTTGGGAGAGGATATTGTCCAGAA
AATTAATGCATTCTTTTGTCACAATTAGCCTTTTTTGTGGGGGTGTGTCTTTTTGTTTTT
GTTTTGTTTTTTTTTCCTTCGACTTTTCTTTCTTTGCTTTAAGACCTCTGCCACTTGGGA
AATTGTAACAGTTAATTACTTTGAATGTTGCTAAAAGGACATTTTGTGTAGGGTCAGGTT
ATTTTTATATGAGTTAATGTGAAGTTGTAAATGGAAATCTTTCCTTAAAGTATAACATAC
TGATGTCTGTATAAATCTGTGTCTACCCTAGAAGCTGTGCTGTGGAAGGCGTTCTTACTC
ATGCTGTTACTGTACTTCTGCACCATTTCAGACGTGTTAGCGTAGATGTGGGTTTATGAC
TGCCGAGTTTGCCCAGTACAGTAGTTTTATCACTAAAAGTTGGACTTGTTGATGCAGTCC
TATAGTAGTTTCAGTGTTAGATACAGTTTTTTCCACTATACATCTGTGCATTTTCTCTTT
AGGTGACTGAATGTTAGTTAAAGAAATTTGTGTGCATAGTTACTCAGTTTTTATGAACTG
TTGTATCCTGTTAATGCATATGCTCTGTGACTCCAGTATATCTTACCTGTACTGACCAAA
CCTAAATAAAGATTTTTATTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGGCAGCGAGACCCGCAAATAAAGGGGAGCGCCAGGGCTGCGGCGGGAGGAGGCGCG
CGGGGGCCGGCGGCAGCGCGGTCGGGCGGCCCGGGCAGCGAGCGGCGGCGCGCGGTCGGC
CTATGTGACTGGGCGGCGCCCGCGCGGCCTCCGTCCGGAGAGGATTCAAGATGACCAACG
AGGAACCTCTTCCCAAAAAGGTTCGACTGAGTGAGACAGACTTCAAAGTTATGGCACGAG
ACGAATTGATTCTAAGGTGGAAACAATACGAAGCATACGTGCAAGCTTTGGAGGGCAAGT
ACACAGATCTTAACTCTAATGATGTAACTGGCTTAAGGGAGTCTGAAGAAAAACTAAAGC
AGCAACAGCAAGAATCTGCACGCAGGGAAAACATCCTTGTAATGCGCCTAGCAACCAAGG
AGCAAGAGATGCAAGAGTGTACTACTCAAATCCAGTACCTCAAGCAAGTCCAGCAGCCTA
GCGTTGCCCAACTGAGATCAACAATGGTCGACCCAGCGATCAACTTGTTTTTCCTAAAAA
TGAAAGGTGAACTGGAACAGACTAAAGACAAACTGGAACAAGCCCAAAATGAACTGAGTG
CCTGGAAGTTTACGCCTGATAGCCAAACAGGCAAAAAGTTAATGGCGAAGTGTCGAATGC
TTATCCAGGAGAATCAAGAGCTTGGAAGGCAGCTGTCCCAGGGACGTATTGCACAACTTG
AAGCAGAGTTGGCTTTACAGAAGAAATATAGTGAGGAGCTTAAAAGCAGTCAGGATGAAC
TGAATGACTTCATCATTCAACTTGACGAAGAAGTAGAGGGTATGCAGAGTACCATTCTAG
TCCTTCAACAGCAGCTGAAGGAGACCCGCCAGCAGCTGGCTCAGTACCAACAGCAGCAGT
CTCAAGCCCCAGGCCCGAGCACCAGCAGGACTCCGTCTGAGCCTGGAGGACAGGCAGAGG
CCACAGGGAAAGACTGCAGTCGTCTGGCCAACGGACCAAGTAATGGCAGCTCCTCCCGGC
AGAGGACGTCTGGGTCTGGGTTTCACAGGGAGGGCGACACGACCGAAGATGACTTTCCTC
CTTCTCCGGGGAGCGGGAATAAGGCCTCCAACAGCTCAGAGGAGAGAACTGGCAGAGGAG
GTAGTAGTTACGTAAACCAACTCAGTGCTGGGTATGAAAGCGTAGACTCTCCCACGGGCA
GTGAAAACTCTCTCACACGCCACTCACATGACACAGACTCCAACCCTGACCCTCAAGAGG
AGAAAACCGTGAGTGGGAAAGGTAGCCGAACTGCGGGTTCCCGCCACGTCCAGAATGGCT
TGGACTCAAGTGTAAATGTACAGGGTTCGGTTTTGTAAAAAAAAAAGAAAAGAAAAAAAA
GAAATTCCCAGCAAATTTTTATACAGTGTCATTTAATTTGGGAGAGGATATTGTCCAGAA
AATTAATGCATTCTTTTGTCACAATTAGCCTTTTTTGTGGGGGTGTGTCTTTTTGTTTTT
GTTTTGTTTTTTTTTCCTTCGACTTTTCTTTCTTTGCTTTAAGACCTCTGCCACTTGGGA
AATTGTAACAGTTAATTACTTTGAATGTTGCTAAAAGGACATTTTGTGTAGGGTCAGGTT
ATTTTTATATGAGTTAATGTGAAGTTGTAAATGGAAATCTTTCCTTAAAGTATAACATAC
TGATGTCTGTATAAATCTGTGTCTACCCTAGAAGCTGTGCTGTGGAAGGCGTTCTTACTC
ATGCTGTTACTGTACTTCTGCACCATTTCAGACGTGTTAGCGTAGATGTGGGTTTATGAC
TGCCGAGTTTGCCCAGTACAGTAGTTTTATCACTAAAAGTTGGACTTGTTGATGCAGTCC
TATAGTAGTTTCAGTGTTAGATACAGTTTTTTCCACTATACATCTGTGCATTTTCTCTTT
AGGTGACTGAATGTTAGTTAAAGAAATTTGTGTGCATAGTTACTCAGTTTTTATGAACTG
TTGTATCCTGTTAATGCATATGCTCTGTGACTCCAGTATATCTTACCTGTACTGACCAAA
CCTAAATAAAGATTTTTATTGTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61847527|ref|XP_585575.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61847527|ref|XP_585575.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               744-1932, - strand, RNAz p=0.99716
               

               
               1056-1175, - strand, RNAz p=0.602236
               

               
               1256-1375, + strand, RNAz p=0.781519

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               744-1932, - strand, RNAz p=0.99716
               

               
               1056-1175, - strand, RNAz p=0.602236
               

               
               1256-1375, + strand, RNAz p=0.781519

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL583911, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL583911, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               49-1504, gnl|bosTau2|chr23 (24519840-24518389)
               

               
               49-1504, gnl|Hg17|chr6 (160130431-160147237)
               

               
               49-1504, gnl|Mm7|chr17 (11778589-11794804)
               


               
               1524-2064, gnl|bosTau2|chr23 (24518403-24517867)
               

               
               1524-2064, gnl|Hg17|chr6 (160147223-160147754)
               

               
               1524-2064, gnl|Mm7|chr17 (11794766-11795304)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-1504, gnl|bosTau2|chr23 (24519840-24518389)
               

               
               49-1504, gnl|Hg17|chr6 (160130431-160147237)
               

               
               49-1504, gnl|Mm7|chr17 (11778589-11794804)
               


               
               1524-2064, gnl|bosTau2|chr23 (24518403-24517867)
               

               
               1524-2064, gnl|Hg17|chr6 (160147223-160147754)
               

               
               1524-2064, gnl|Mm7|chr17 (11794766-11795304)

Expressed library(ies): 36 entry(ies)

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Expressed library(ies): 36 entry(ies)

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               clu (0.717875)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.717875)
               

               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	744-1932, - strand, RNAz p=0.99716
	1056-1175, - strand, RNAz p=0.602236
	1256-1375, + strand, RNAz p=0.781519

	49-1504, gnl\|bosTau2\|chr23 (24519840-24518389)
	49-1504, gnl\|Hg17\|chr6 (160130431-160147237)
	49-1504, gnl\|Mm7\|chr17 (11778589-11794804)

	1524-2064, gnl\|bosTau2\|chr23 (24518403-24517867)
	1524-2064, gnl\|Hg17\|chr6 (160147223-160147754)
	1524-2064, gnl\|Mm7\|chr17 (11794766-11795304)

	clu (0.717875)
	amn (0.417711)
	cty (0.41632)
	fcc (0.39557)
	elu (0.385356)
	fco (0.314416)
	liv (0.292569)
	ret (0.257467)
	mgp (0.230681)
	mas (0.210305)
	tes (0.207814)
	ldo (0.194005)
	nlu (0.191681)
	sag (0.182715)
	mgm (0.180343)
	sin (0.174948)
	rec (0.17307)
	cje (0.165235)
	csp (0.161186)
	mga (0.160205)
	eli (0.151814)
	bfe (0.149858)
	fat (0.147427)
	spl (0.143184)
	lnt (0.142308)
	hlv (0.139256)
	nmm (0.132802)
	kid (0.129735)
	cbr (0.127975)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)
	nbm (0.0993246)
	jej (0.0989218)