Ss1.1-Thy1-THY010058B11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACCCGCACCGCGGCGGCCCTGCGAGCCTGTGTGCTGGCCGAGTCGCCGCCACCGCCGA GATGTGGGCCGTCCTGTCGCTGCTCTGCGCTGGGGCCTGGCTCCTCGGTCCCCCAGCCTG CGGCGCCTCCAACCTGGCCGTGAGCTCCTTCGAGAAGTTGCACTTTAAGTCCTGGATGGT GCAGCACCAAAAGAAATACAGCTTGGAGGAGTACCACCACCGGCTGCAGGTGTTTGTCAG CAACTGGAGGAAGATCAATGCCCACAACGCTGGGAACCACACATTTAAACTGGGACTGAA CCAATTTTCAGACATGAGCTTTGATGAAATAAGACACAAGTATCTTTGGTCAGAGCCTCA GAATTGTTCAGCCACCAAAGGTAACTACCTGCGGGGTACCGGTCCCTACCCACCCTCTAT GGACTGGCGGAAAAAAGGAAATTTTGTCTCACCAGTGAAAAATCAGGGCAGCTGCGGCAG TTGCTGGACCTTCTCTACCACAGGGGCCTTGGAGTCTGCTGTTGCCATCGCAACTGGGAA GATGCTGTCCTTGGCAGAACAGCAGCTGGTGGACTGCGCCCAGAACTTCAACAATCACGG CTGCCAAGGGGGTCTCCCCAGCCAGGCCTTCGAGTACATCCGCTACAACAAGGGCATCAT GGGTGAAGACACCTACCCGTACAAGGGCCAGGATGATCACTGCAAGTTCCAGCCCGATAA GGCCATTGCTTTTGTCAAGGATGTAGCCAACATCACAATGAATGACGAGGAGGCGATGGT GGAGGCGGTGGCCCTGTACAACCCTGTGAGCTTTGCCTTCGAGGTGACTAATGACTTTCT CATGTACAGAAAGGGCATCTACTCCAGTACCTCCTGCCATAAAACTCCAGATAAAGTCAA CCACGCAGTACTGGCTGTTGGGTACGGAGAAGAAAATGGGATACCATATTGGATTGTGAA AAACTCATGGGGTCCCCAGTGGGGAATGAATGGGTACTTCCTCATCGAGCGTGGAAAGAA CATGTGCGGCCTGGCCGCCTGCGCCTCCTACCCGATCCCCCTGGTGTGAGCCAGGGCAGC AGAGCGAACCGGGCCTAAAATCTTGCCCTGGAGGAAGTGGTGGGCCCCTTCCTTTGCATC CTCACTCCCGTGCCCAGCCTGGAAACTGAAATGAGGAAGAATTCTGCAGAGCAACAAGCC CACCCACGTTTTCCGACGCAGAGGTAACCACCAGCCGTAACCACAAGCCGTGTGCCTTGG GCGTGATTTTTAACCGACTCAACCAAAAATATTTTCTTCCCAGAAAGGCTGTTTGTCACA TGTGAAAGAAGCACCATTGACCTGTCTTTTCTGGGGTTCTGATTCAATAAACATTGAGCA CCTCCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACCCGCACCGCGGCGGCCCTGCGAGCCTGTGTGCTGGCCGAGTCGCCGCCACCGCCGA GATGTGGGCCGTCCTGTCGCTGCTCTGCGCTGGGGCCTGGCTCCTCGGTCCCCCAGCCTG CGGCGCCTCCAACCTGGCCGTGAGCTCCTTCGAGAAGTTGCACTTTAAGTCCTGGATGGT GCAGCACCAAAAGAAATACAGCTTGGAGGAGTACCACCACCGGCTGCAGGTGTTTGTCAG CAACTGGAGGAAGATCAATGCCCACAACGCTGGGAACCACACATTTAAACTGGGACTGAA CCAATTTTCAGACATGAGCTTTGATGAAATAAGACACAAGTATCTTTGGTCAGAGCCTCA GAATTGTTCAGCCACCAAAGGTAACTACCTGCGGGGTACCGGTCCCTACCCACCCTCTAT GGACTGGCGGAAAAAAGGAAATTTTGTCTCACCAGTGAAAAATCAGGGCAGCTGCGGCAG TTGCTGGACCTTCTCTACCACAGGGGCCTTGGAGTCTGCTGTTGCCATCGCAACTGGGAA GATGCTGTCCTTGGCAGAACAGCAGCTGGTGGACTGCGCCCAGAACTTCAACAATCACGG CTGCCAAGGGGGTCTCCCCAGCCAGGCCTTCGAGTACATCCGCTACAACAAGGGCATCAT GGGTGAAGACACCTACCCGTACAAGGGCCAGGATGATCACTGCAAGTTCCAGCCCGATAA GGCCATTGCTTTTGTCAAGGATGTAGCCAACATCACAATGAATGACGAGGAGGCGATGGT GGAGGCGGTGGCCCTGTACAACCCTGTGAGCTTTGCCTTCGAGGTGACTAATGACTTTCT CATGTACAGAAAGGGCATCTACTCCAGTACCTCCTGCCATAAAACTCCAGATAAAGTCAA CCACGCAGTACTGGCTGTTGGGTACGGAGAAGAAAATGGGATACCATATTGGATTGTGAA AAACTCATGGGGTCCCCAGTGGGGAATGAATGGGTACTTCCTCATCGAGCGTGGAAAGAA CATGTGCGGCCTGGCCGCCTGCGCCTCCTACCCGATCCCCCTGGTGTGAGCCAGGGCAGC AGAGCGAACCGGGCCTAAAATCTTGCCCTGGAGGAAGTGGTGGGCCCCTTCCTTTGCATC CTCACTCCCGTGCCCAGCCTGGAAACTGAAATGAGGAAGAATTCTGCAGAGCAACAAGCC CACCCACGTTTTCCGACGCAGAGGTAACCACCAGCCGTAACCACAAGCCGTGTGCCTTGG GCGTGATTTTTAACCGACTCAACCAAAAATATTTTCTTCCCAGAAAGGCTGTTTGTCACA TGTGAAAGAAGCACCATTGACCTGTCTTTTCTGGGGTTCTGATTCAATAAACATTGAGCA CCTCCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 35-150, gnl|bosTau2|chr21 (17784524-17784409) | |
| 35-150, gnl|Hg17|chr15 (77024390-77024290) | |
| 35-150, gnl|Mm7|chr9 (89683500-89683603) | |
| 177-289, gnl|bosTau2|chr21 (17779433-17779321) | |
| 177-289, gnl|canFam2|chr3 (60968575-60968453) | |
| 177-289, gnl|danRer3|chrUn (61020596-61020727) | |
| 177-289, gnl|dasNov1|scaffold_8215 (45162-45284) | |
| 177-289, gnl|echTel1|scaffold_227282 (2939-2816) | |
| 177-289, gnl|hg17|chr15 (77016714-77016836) | |
| 177-289, gnl|Hg17|chr15 (77016828-77016716) | |
| 177-289, gnl|loxAfr1|scaffold_39755 (8817-8695) | |
| 177-289, gnl|mm7|chr9 (89690574-89690456) | |
| 177-289, gnl|Mm7|chr9 (89690458-89690570) | |
| 177-289, gnl|oryCun1|scaffold_198982 (3522-3403) | |
| 177-289, gnl|panTro1|chr16 (77724520-77724642) | |
| 177-289, gnl|rheMac2|chr7 (58064957-58065079) | |
| 177-289, gnl|rn3|chr8 (94997165-94997043) | |
| 177-289, gnl|tetNig1|chr13 (2266948-2267057) | |
| 358-467, gnl|bosTau2|chr21 (17777351-17777242) | |
| 358-467, gnl|canFam2|chr3 (60970463-60970344) | |
| 358-467, gnl|danRer3|chrUn (61020253-61020363) | |
| 358-467, gnl|dasNov1|scaffold_8215 (43425-43544) | |
| 358-467, gnl|fr1|chrUn (244880564-244880446) | |
| 358-467, gnl|hg17|chr15 (77014373-77014492) | |
| 358-467, gnl|Hg17|chr15 (77014483-77014374) | |
| 358-467, gnl|loxAfr1|scaffold_39755 (11786-11667) | |
| 358-467, gnl|mm7|chr9 (89693208-89693089) | |
| 358-467, gnl|Mm7|chr9 (89693096-89693205) | |
| 358-467, gnl|oryCun1|scaffold_198982 (5852-5733) | |
| 358-467, gnl|panTro1|chr16 (77722174-77722293) | |
| 358-467, gnl|rheMac2|chr7 (58062949-58063068) | |
| 358-467, gnl|rn3|chr8 (94999798-94999679) | |
| 358-467, gnl|tetNig1|chr13 (2266537-2266653) | |
| 863-996, gnl|bosTau2|chr21 (17765084-17764951) | |
| 863-996, gnl|canFam2|chr3 (60977489-60977339) | |
| 863-996, gnl|danRer3|chrUn (61016901-61017038) | |
| 863-996, gnl|dasNov1|scaffold_26920 (269-419) | |
| 863-996, gnl|echTel1|scaffold_300165 (2196-2045) | |
| 863-996, gnl|fr1|chrUn (244881954-244881811) | |
| 863-996, gnl|hg17|chr15 (77002379-77002529) | |
| 863-996, gnl|Hg17|chr15 (77002520-77002387) | |
| 863-996, gnl|loxAfr1|scaffold_62556 (7335-7185) | |
| 863-996, gnl|mm7|chr9 (89704055-89703909) | |
| 863-996, gnl|Mm7|chr9 (89703916-89704049) | |
| 863-996, gnl|oryCun1|scaffold_156416 (4238-4388) | |
| 863-996, gnl|panTro1|chr16 (77709868-77710018) | |
| 863-996, gnl|rheMac2|chr7 (58051065-58051215) | |
| 863-996, gnl|rn3|chr8 (95008808-95008659) | |
| 863-996, gnl|tetNig1|chr13 (2265121-2265266) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-150, gnl|bosTau2|chr21 (17784524-17784409) | |
| 35-150, gnl|Hg17|chr15 (77024390-77024290) | |
| 35-150, gnl|Mm7|chr9 (89683500-89683603) | |
| 177-289, gnl|bosTau2|chr21 (17779433-17779321) | |
| 177-289, gnl|canFam2|chr3 (60968575-60968453) | |
| 177-289, gnl|danRer3|chrUn (61020596-61020727) | |
| 177-289, gnl|dasNov1|scaffold_8215 (45162-45284) | |
| 177-289, gnl|echTel1|scaffold_227282 (2939-2816) | |
| 177-289, gnl|hg17|chr15 (77016714-77016836) | |
| 177-289, gnl|Hg17|chr15 (77016828-77016716) | |
| 177-289, gnl|loxAfr1|scaffold_39755 (8817-8695) | |
| 177-289, gnl|mm7|chr9 (89690574-89690456) | |
| 177-289, gnl|Mm7|chr9 (89690458-89690570) | |
| 177-289, gnl|oryCun1|scaffold_198982 (3522-3403) | |
| 177-289, gnl|panTro1|chr16 (77724520-77724642) | |
| 177-289, gnl|rheMac2|chr7 (58064957-58065079) | |
| 177-289, gnl|rn3|chr8 (94997165-94997043) | |
| 177-289, gnl|tetNig1|chr13 (2266948-2267057) | |
| 358-467, gnl|bosTau2|chr21 (17777351-17777242) | |
| 358-467, gnl|canFam2|chr3 (60970463-60970344) | |
| 358-467, gnl|danRer3|chrUn (61020253-61020363) | |
| 358-467, gnl|dasNov1|scaffold_8215 (43425-43544) | |
| 358-467, gnl|fr1|chrUn (244880564-244880446) | |
| 358-467, gnl|hg17|chr15 (77014373-77014492) | |
| 358-467, gnl|Hg17|chr15 (77014483-77014374) | |
| 358-467, gnl|loxAfr1|scaffold_39755 (11786-11667) | |
| 358-467, gnl|mm7|chr9 (89693208-89693089) | |
| 358-467, gnl|Mm7|chr9 (89693096-89693205) | |
| 358-467, gnl|oryCun1|scaffold_198982 (5852-5733) | |
| 358-467, gnl|panTro1|chr16 (77722174-77722293) | |
| 358-467, gnl|rheMac2|chr7 (58062949-58063068) | |
| 358-467, gnl|rn3|chr8 (94999798-94999679) | |
| 358-467, gnl|tetNig1|chr13 (2266537-2266653) | |
| 863-996, gnl|bosTau2|chr21 (17765084-17764951) | |
| 863-996, gnl|canFam2|chr3 (60977489-60977339) | |
| 863-996, gnl|danRer3|chrUn (61016901-61017038) | |
| 863-996, gnl|dasNov1|scaffold_26920 (269-419) | |
| 863-996, gnl|echTel1|scaffold_300165 (2196-2045) | |
| 863-996, gnl|fr1|chrUn (244881954-244881811) | |
| 863-996, gnl|hg17|chr15 (77002379-77002529) | |
| 863-996, gnl|Hg17|chr15 (77002520-77002387) | |
| 863-996, gnl|loxAfr1|scaffold_62556 (7335-7185) | |
| 863-996, gnl|mm7|chr9 (89704055-89703909) | |
| 863-996, gnl|Mm7|chr9 (89703916-89704049) | |
| 863-996, gnl|oryCun1|scaffold_156416 (4238-4388) | |
| 863-996, gnl|panTro1|chr16 (77709868-77710018) | |
| 863-996, gnl|rheMac2|chr7 (58051065-58051215) | |
| 863-996, gnl|rn3|chr8 (95008808-95008659) | |
| 863-996, gnl|tetNig1|chr13 (2265121-2265266) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| nje (1.16144) | |
| cty (0.72856) | |
| cly (0.603209) | |
| col (0.585023) | |
| jca (0.569801) | |
| cga (0.558191) | |
| nco (0.485201) | |
| lnt (0.426925) | |
| cov (0.396458) | |
| ill (0.351185) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| jej (0.296765) | |
| pla (0.267344) | |
| cbl (0.229595) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ton (0.1755) | |
| eye (0.170503) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| clu (0.119646) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (1.16144) | |
| cty (0.72856) | |
| cly (0.603209) | |
| col (0.585023) | |
| jca (0.569801) | |
| cga (0.558191) | |
| nco (0.485201) | |
| lnt (0.426925) | |
| cov (0.396458) | |
| ill (0.351185) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| jej (0.296765) | |
| pla (0.267344) | |
| cbl (0.229595) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ton (0.1755) | |
| eye (0.170503) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| clu (0.119646) |