Non-Coding RNA Search

Ss1.1-Thy1-THY010058C03.5

Sequence:


               
               GAACTGCGCGCTTGAGGTGACAAGGGACTGAGGTACGGAGGTGTGCGCGGTTGACTTCCG
CCGGCGAAAGGGAACTGCGCGCTTGAGGTGACAAGGGACTGAGCATTTCAGATCTGCTTG
GTAAACCTGGTGTGCCACCATGCTAGCGGCAAGACTCGTGTGTCTCCGGACTCTACCCTC
CAGAGTTTTCCATCCAACTTTCACCAAGGCCTCCCCTGTTGTGAAGAATTCCATCACAAA
GAATCAATGGCTTTTAACACCCAGCAGGGAATATGCTACCAAGACAAGAATTGGGATCCG
CCGTGGGAAAACTGGCCAAGAACTCAAGGAGGCAGCTTTGGAACCATCAGTGGAAAAAAT
ATTTAAAATTGATCAGATGGGAAGATGGTTTATTGCTGGAGGGGCTGCTGTTGGTCTTGG
AGCGCTGTGCTACTATGGCTTGGGAATGTCTAATGAGATTGGAGCTATTGAAAAGGCCAT
AATTTGGCCTCAGTATGTGAAAGATAGAATTCATTCAACTTATATGTACTTAGCAGGAAG
TATTGGTTTAACAGCTATGTCTGCTCTGGCAGTGAGCAGAACTCCTGCTCTCATGAACTT
CATGATGAAAGGCTCTTGGGTGACAATTGGTGCAACCTTTGCAGCCATGATTGGAGCTGG
AATGCTGGTACAATCAATATCATATGACCGGAGCCCAGGCCCAAAGCATCTTGCTTGGTT
ACTACATTCTGGTGTGATGGGTGCGGTGGTGGCTCCTTTGACGATATTAGGGGGGCCTCT
TCTCATCAGGGCTGCATGGTACACAGCTGGCATCGTAGGAGGCCTCTCCACTGTGGCCAT
GTGTGCGCCCAGTGAGAAGTTTCTGAACATGGGAGCACCCCTGGGCGTGGGCCTGGGTCT
CGTCTTTGTATCCTCACTGGGATCTATGTTTCTTCCACCTACCACTGTGGCTGGTGCCAC
TCTATACTCAGTGGCAATTTACGGTGGATTAGTTCTTTTCAGCATGTTTCTTCTGTATGA
TACACAGAAAGTAATCAAACGTGCAGAAGTAGTACCAATGTATGGAGTTCAAAAATATGA
TCCCATCAATTCGATGCTGGGAATCTACATGGATACATTAAACATATTTATGCGAGTTGC
CAGTATTCTAGCAACTGGAGGCAACAGAAAGAAGTGAAGTGACTCAGCTTCTGACTTCCT
TAATACATCAGATATCTGTCTTGTTAAATAGGAGCAGATATTCATTAAATAGTTTGTGCA
AGCAGATTTCATTGAAGTTTAGAAGATAAGAACTTTGTCACCATGCTTCAAATGTTTCAA
TAATGTGATGCTTCAGGTCTGCTTTTTCTTCTGGAGAATAAATTCAGTAGTTGTCTTCCA
AATAGCACACATATTTTCAGTTCTCATGTGTGAGTAATTCTAAAATGCTTTAATGAATGT
GATAACTAAGGTTTATGTTGCAGGAATTTCAGTATTTTATCTATTTTTAAATTTACTTGG
TTAAGTGAAATCATGTACCTGCATTTTTTTTTTTTTTTTGAATGTGGAAGATTAACAAGT
AATATCATAAGTAACAGAGGGGGTTGATAAAGGGACCAAAGAGAAGTAAAGGGTCACCTG
CAGTTTTTCTTTGAATACTTAGAACGTAGTACTTGTGTAACTGGTGAGCCATTGAGGGGG
TTTAGATGTTTGGAAACAAGTCACCACAGTACATCTGCTCAACTTTGCAGAAGCATTGAG
CAGAAAACAAAGACAGGTGGTTCTTTCTCCTGCTCTCCCTTCTCAGGGTTCTCCTTACAG
TATAGATGTGATCATGTCTGGCTTCTCCTTGTTTGACATTGTTAGGAGAGTCCAGGATGT
TAACCATATCAAGAGTTTCTGTTGTAGAATATATATCACATGTGTGTGTGAGTCTTACTT
TTGAATTGTCAAAATATATAGGATAAAATAATCAGCATGAAAATTGTTGCACTTTTAAGT
ATACAAACAATATGCATAATTGCTGAATATTTTTGCATATTGAAATGTTTAAAGGAGTAC
ATGCTTCCCTTTCTTATCTCTTCAGGCTTTAAAGTGCTAATCAGGAAAGCCTATTTGAGG
TTTTTCCCCTCAGATTTGGTGTTTTGGATTCCCTCTCAGAAGAATCACTTAAAAAAGGAA
AGCAAAGCAAGGCTTTTTTAATGAATATGTATCAATCAAAAATGTAACAGAGAAAATGGC
ATTCTTAGAGTTTCCCCTAGCAGAGCTTTCCTTCTCTATCCATAGACCATTATTTTGCCA
TTTGTAAGTTTTTGATACAGAAGAGTTATTTTTGGAAGTCCTTATAAATGAAATAAGTGT
ATGGTTTCAAGATGGTTGATGTTTTTGATATTTATTGAAGCAATCCAGAAATAACTATTC
TAACCATCTCAAGTTACAGAGGAAGCTTATTTCTGAAATAATAAAGATTCCAGCCAGAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTGCGCGCTTGAGGTGACAAGGGACTGAGGTACGGAGGTGTGCGCGGTTGACTTCCG
CCGGCGAAAGGGAACTGCGCGCTTGAGGTGACAAGGGACTGAGCATTTCAGATCTGCTTG
GTAAACCTGGTGTGCCACCATGCTAGCGGCAAGACTCGTGTGTCTCCGGACTCTACCCTC
CAGAGTTTTCCATCCAACTTTCACCAAGGCCTCCCCTGTTGTGAAGAATTCCATCACAAA
GAATCAATGGCTTTTAACACCCAGCAGGGAATATGCTACCAAGACAAGAATTGGGATCCG
CCGTGGGAAAACTGGCCAAGAACTCAAGGAGGCAGCTTTGGAACCATCAGTGGAAAAAAT
ATTTAAAATTGATCAGATGGGAAGATGGTTTATTGCTGGAGGGGCTGCTGTTGGTCTTGG
AGCGCTGTGCTACTATGGCTTGGGAATGTCTAATGAGATTGGAGCTATTGAAAAGGCCAT
AATTTGGCCTCAGTATGTGAAAGATAGAATTCATTCAACTTATATGTACTTAGCAGGAAG
TATTGGTTTAACAGCTATGTCTGCTCTGGCAGTGAGCAGAACTCCTGCTCTCATGAACTT
CATGATGAAAGGCTCTTGGGTGACAATTGGTGCAACCTTTGCAGCCATGATTGGAGCTGG
AATGCTGGTACAATCAATATCATATGACCGGAGCCCAGGCCCAAAGCATCTTGCTTGGTT
ACTACATTCTGGTGTGATGGGTGCGGTGGTGGCTCCTTTGACGATATTAGGGGGGCCTCT
TCTCATCAGGGCTGCATGGTACACAGCTGGCATCGTAGGAGGCCTCTCCACTGTGGCCAT
GTGTGCGCCCAGTGAGAAGTTTCTGAACATGGGAGCACCCCTGGGCGTGGGCCTGGGTCT
CGTCTTTGTATCCTCACTGGGATCTATGTTTCTTCCACCTACCACTGTGGCTGGTGCCAC
TCTATACTCAGTGGCAATTTACGGTGGATTAGTTCTTTTCAGCATGTTTCTTCTGTATGA
TACACAGAAAGTAATCAAACGTGCAGAAGTAGTACCAATGTATGGAGTTCAAAAATATGA
TCCCATCAATTCGATGCTGGGAATCTACATGGATACATTAAACATATTTATGCGAGTTGC
CAGTATTCTAGCAACTGGAGGCAACAGAAAGAAGTGAAGTGACTCAGCTTCTGACTTCCT
TAATACATCAGATATCTGTCTTGTTAAATAGGAGCAGATATTCATTAAATAGTTTGTGCA
AGCAGATTTCATTGAAGTTTAGAAGATAAGAACTTTGTCACCATGCTTCAAATGTTTCAA
TAATGTGATGCTTCAGGTCTGCTTTTTCTTCTGGAGAATAAATTCAGTAGTTGTCTTCCA
AATAGCACACATATTTTCAGTTCTCATGTGTGAGTAATTCTAAAATGCTTTAATGAATGT
GATAACTAAGGTTTATGTTGCAGGAATTTCAGTATTTTATCTATTTTTAAATTTACTTGG
TTAAGTGAAATCATGTACCTGCATTTTTTTTTTTTTTTTGAATGTGGAAGATTAACAAGT
AATATCATAAGTAACAGAGGGGGTTGATAAAGGGACCAAAGAGAAGTAAAGGGTCACCTG
CAGTTTTTCTTTGAATACTTAGAACGTAGTACTTGTGTAACTGGTGAGCCATTGAGGGGG
TTTAGATGTTTGGAAACAAGTCACCACAGTACATCTGCTCAACTTTGCAGAAGCATTGAG
CAGAAAACAAAGACAGGTGGTTCTTTCTCCTGCTCTCCCTTCTCAGGGTTCTCCTTACAG
TATAGATGTGATCATGTCTGGCTTCTCCTTGTTTGACATTGTTAGGAGAGTCCAGGATGT
TAACCATATCAAGAGTTTCTGTTGTAGAATATATATCACATGTGTGTGTGAGTCTTACTT
TTGAATTGTCAAAATATATAGGATAAAATAATCAGCATGAAAATTGTTGCACTTTTAAGT
ATACAAACAATATGCATAATTGCTGAATATTTTTGCATATTGAAATGTTTAAAGGAGTAC
ATGCTTCCCTTTCTTATCTCTTCAGGCTTTAAAGTGCTAATCAGGAAAGCCTATTTGAGG
TTTTTCCCCTCAGATTTGGTGTTTTGGATTCCCTCTCAGAAGAATCACTTAAAAAAGGAA
AGCAAAGCAAGGCTTTTTTAATGAATATGTATCAATCAAAAATGTAACAGAGAAAATGGC
ATTCTTAGAGTTTCCCCTAGCAGAGCTTTCCTTCTCTATCCATAGACCATTATTTTGCCA
TTTGTAAGTTTTTGATACAGAAGAGTTATTTTTGGAAGTCCTTATAAATGAAATAAGTGT
ATGGTTTCAAGATGGTTGATGTTTTTGATATTTATTGAAGCAATCCAGAAATAACTATTC
TAACCATCTCAAGTTACAGAGGAAGCTTATTTCTGAAATAATAAAGATTCCAGCCAGAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q861V8_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q861V8_BOVIN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               442-543, - strand, RNAz p=0.622847
               

               
               895-1046, - strand, RNAz p=0.643372

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-543, - strand, RNAz p=0.622847
               

               
               895-1046, - strand, RNAz p=0.643372

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               66-2472, gnl|bosTau2|chr9 (63350353-63347972)
               

               
               66-2472, gnl|Hg17|chr10 (85891196-85903426)
               

               
               66-2472, gnl|Mm7|chr14 (34561855-34548868)
               


               
               306-1252, gnl|bosTau2|chr6 (54060519-54061458)
               

               
               306-1252, gnl|Hg17|chr10 (85892428-85902136)
               

               
               306-1252, gnl|Mm7|chr14 (34561283-34550176)
               


               
               1285-1653, gnl|bosTau2|chr17 (5669628-5669267)
               

               
               1285-1653, gnl|Hg17|chr10 (85902190-85902565)
               


               
               2195-2469, gnl|bosTau2|chr16 (22812120-22811849)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-2472, gnl|bosTau2|chr9 (63350353-63347972)
               

               
               66-2472, gnl|Hg17|chr10 (85891196-85903426)
               

               
               66-2472, gnl|Mm7|chr14 (34561855-34548868)
               


               
               306-1252, gnl|bosTau2|chr6 (54060519-54061458)
               

               
               306-1252, gnl|Hg17|chr10 (85892428-85902136)
               

               
               306-1252, gnl|Mm7|chr14 (34561283-34550176)
               


               
               1285-1653, gnl|bosTau2|chr17 (5669628-5669267)
               

               
               1285-1653, gnl|Hg17|chr10 (85902190-85902565)
               


               
               2195-2469, gnl|bosTau2|chr16 (22812120-22811849)

Expressed library(ies): 64 entry(ies)

More info

Expressed library(ies): 64 entry(ies)

Help | Less info


               
               hea (1.84049)
               

               
               tbr (1.23343)
               

               
               bfe (1.19886)
               

               
               kid (1.03788)
               

               
               pla (0.802032)
               

               
               lun (0.752445)
               

               
               fbs (0.701385)
               

               
               che (0.68157)
               

               
               spc (0.680195)
               

               
               cty (0.62448)
               

               
               ste (0.540833)
               

               
               isp (0.451128)
               

               
               pty (0.428143)
               

               
               tes (0.415628)
               

               
               ssp (0.406559)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               ldo (0.38801)
               

               
               ret (0.3862)
               

               
               pgl (0.35545)
               

               
               ebs (0.354904)
               

               
               ill (0.351185)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 64 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (1.84049)
               

               
               tbr (1.23343)
               

               
               bfe (1.19886)
               

               
               kid (1.03788)
               

               
               pla (0.802032)
               

               
               lun (0.752445)
               

               
               fbs (0.701385)
               

               
               che (0.68157)
               

               
               spc (0.680195)
               

               
               cty (0.62448)
               

               
               ste (0.540833)
               

               
               isp (0.451128)
               

               
               pty (0.428143)
               

               
               tes (0.415628)
               

               
               ssp (0.406559)
               

               
               cov (0.396458)
               

               
               fcc (0.39557)
               

               
               ldo (0.38801)
               

               
               ret (0.3862)
               

               
               pgl (0.35545)
               

               
               ebs (0.354904)
               

               
               ill (0.351185)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               mga (0.32041)
               

               
               fat (0.294855)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               sug (0.254582)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	442-543, - strand, RNAz p=0.622847
	895-1046, - strand, RNAz p=0.643372

	66-2472, gnl\|bosTau2\|chr9 (63350353-63347972)
	66-2472, gnl\|Hg17\|chr10 (85891196-85903426)
	66-2472, gnl\|Mm7\|chr14 (34561855-34548868)

	306-1252, gnl\|bosTau2\|chr6 (54060519-54061458)
	306-1252, gnl\|Hg17\|chr10 (85892428-85902136)
	306-1252, gnl\|Mm7\|chr14 (34561283-34550176)

	1285-1653, gnl\|bosTau2\|chr17 (5669628-5669267)
	1285-1653, gnl\|Hg17\|chr10 (85902190-85902565)

	2195-2469, gnl\|bosTau2\|chr16 (22812120-22811849)

	hea (1.84049)
	tbr (1.23343)
	bfe (1.19886)
	kid (1.03788)
	pla (0.802032)
	lun (0.752445)
	fbs (0.701385)
	che (0.68157)
	spc (0.680195)
	cty (0.62448)
	ste (0.540833)
	isp (0.451128)
	pty (0.428143)
	tes (0.415628)
	ssp (0.406559)
	cov (0.396458)
	fcc (0.39557)
	ldo (0.38801)
	ret (0.3862)
	pgl (0.35545)
	ebs (0.354904)
	ill (0.351185)
	sin (0.349895)
	rec (0.346141)
	fhi (0.339155)
	vin (0.332557)
	cki (0.330469)
	mga (0.32041)
	fat (0.294855)
	cte (0.29274)
	hyp (0.285673)
	lnt (0.284616)
	cst (0.280073)
	cga (0.279096)
	hlv (0.278513)
	sug (0.254582)
	cly (0.241284)
	cbe (0.239234)
	cbl (0.229595)
	mas (0.210305)
	aor (0.195274)
	nlu (0.191681)
	nep (0.183925)
	sag (0.182715)
	gul (0.177588)
	ton (0.1755)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	fco (0.157208)
	eli (0.151814)
	spl (0.143184)
	csk (0.140746)
	nca (0.136874)
	ute (0.132784)
	ova (0.129132)
	thg (0.126791)
	tra (0.123092)
	clu (0.119646)
	ecc (0.115035)
	jej (0.0989218)