Ss1.1-Thy1-THY010059A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTGTCAGTGGTCGTATTTCCGGTAACGGCGGCGGGAAGCGGTCTACAGGCGGGCGTC TAGGCCTCTACCGAGGCGAATCCGGCGGGAATCGGAGCCATCAGAACCGCCACCATGACT GTGGGCAAGAGCAGCAAGATGCTGCAGCACATCGACTACAGGATGAGGTGCATCCTGCAA GACGGCCGTATCTTCATTGGCACCTTTAAAGCTTTTGACAAGCATATGAATTTGATCCTC TGTGACTGTGACGAGTTCAGAAAGATCAAACCAAAGAACTCAAAACAAGCGGAGAGAGAA GAGAAGCGAGTCCTTGGTCTGGTGCTACTTCGAGGGGAGAACCTGGTCTCAATGACGGTA GAGGGACCACCTCCCAAAGATACCGGCATTGCCCGAGTGCCACTAGCTGGAGCTGCTGGG GGCCCAGGGATTGGCAGAGCTGCTGGCAGGGGAATCCCAGCTGGTGTTCCTATGCCCCAG GCTCCTGCAGGACTTGCCGGGCCGGTCCGTGGGGTTGGTGGGCCATCCCAACAGGTGATG ACCCCGCAAGGAAGAGGCACTGTTGCAGCAGCTGCAGCTGCTGCCACAGCCAGTATTGCA GGGGCCCCAACCCAGTACCCACCTGGCCGAGCAGGTCCTCCCCCGCCTATGGGCCGAGGA GCCCCCCCTCCAGGCATGATGGGCCCACCTCCTGGTATGAGGCCTCCCATGGGTCCCCCC ATGGGAATCCCCCCTGGACGAGGAACTCCAATGGGCATGCCCCCACCCGGAATGCGGCCC CCTCCCCCAGGGATGCGAGGCCTTCTTTGACCTTGGCCACAGAATTATGGAAGTAGCTCC ACAGAGGCGTGGGCCCGACCCCCCAGGGCCACGTTACCACACCTGTTTGTTTGTTAAGCC GTTGTTCCGCCGGAGTCTCACCGGATTGTCTGGTTTCCCTTACAGGGCCCCCTCCCCCGG GAATGCGCCCACCAAGGCCCTAGACTCATCTTGACCCTCCTCAGCTCCCTGCCTGTTTCC CGTAAGGCTGTACATAGTCCTTTTACTTCCTTGTGGCCTGTGAAACTAGTTTATAATAAA CTCTTAAGAGAATGCAGTGCTATAAATGCACCTGGTATGTTTGTTTATTTTCAGAAAAAT CTTTGATATACCGGGTGCTTAAATAAGAGGAAGGGTTGCCTTGGAAAAATGAGCCCTAAT CCTTAGTTGCTTCCCTTGTAAAATACTATATTCTTTTGCAGAGATGCACAGCTTCATCAA AGAGAATTACACAATTGAACTACAAGGAAATTCTTTTCACTTGTCAAACTGGCAAAAATC ATTTTGTTGAAATAAAACATTCATATCCTAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTGTCAGTGGTCGTATTTCCGGTAACGGCGGCGGGAAGCGGTCTACAGGCGGGCGTC TAGGCCTCTACCGAGGCGAATCCGGCGGGAATCGGAGCCATCAGAACCGCCACCATGACT GTGGGCAAGAGCAGCAAGATGCTGCAGCACATCGACTACAGGATGAGGTGCATCCTGCAA GACGGCCGTATCTTCATTGGCACCTTTAAAGCTTTTGACAAGCATATGAATTTGATCCTC TGTGACTGTGACGAGTTCAGAAAGATCAAACCAAAGAACTCAAAACAAGCGGAGAGAGAA GAGAAGCGAGTCCTTGGTCTGGTGCTACTTCGAGGGGAGAACCTGGTCTCAATGACGGTA GAGGGACCACCTCCCAAAGATACCGGCATTGCCCGAGTGCCACTAGCTGGAGCTGCTGGG GGCCCAGGGATTGGCAGAGCTGCTGGCAGGGGAATCCCAGCTGGTGTTCCTATGCCCCAG GCTCCTGCAGGACTTGCCGGGCCGGTCCGTGGGGTTGGTGGGCCATCCCAACAGGTGATG ACCCCGCAAGGAAGAGGCACTGTTGCAGCAGCTGCAGCTGCTGCCACAGCCAGTATTGCA GGGGCCCCAACCCAGTACCCACCTGGCCGAGCAGGTCCTCCCCCGCCTATGGGCCGAGGA GCCCCCCCTCCAGGCATGATGGGCCCACCTCCTGGTATGAGGCCTCCCATGGGTCCCCCC ATGGGAATCCCCCCTGGACGAGGAACTCCAATGGGCATGCCCCCACCCGGAATGCGGCCC CCTCCCCCAGGGATGCGAGGCCTTCTTTGACCTTGGCCACAGAATTATGGAAGTAGCTCC ACAGAGGCGTGGGCCCGACCCCCCAGGGCCACGTTACCACACCTGTTTGTTTGTTAAGCC GTTGTTCCGCCGGAGTCTCACCGGATTGTCTGGTTTCCCTTACAGGGCCCCCTCCCCCGG GAATGCGCCCACCAAGGCCCTAGACTCATCTTGACCCTCCTCAGCTCCCTGCCTGTTTCC CGTAAGGCTGTACATAGTCCTTTTACTTCCTTGTGGCCTGTGAAACTAGTTTATAATAAA CTCTTAAGAGAATGCAGTGCTATAAATGCACCTGGTATGTTTGTTTATTTTCAGAAAAAT CTTTGATATACCGGGTGCTTAAATAAGAGGAAGGGTTGCCTTGGAAAAATGAGCCCTAAT CCTTAGTTGCTTCCCTTGTAAAATACTATATTCTTTTGCAGAGATGCACAGCTTCATCAA AGAGAATTACACAATTGAACTACAAGGAAATTCTTTTCACTTGTCAAACTGGCAAAAATC ATTTTGTTGAAATAAAACATTCATATCCTAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 8 entry(ies) | More info |
| Predicted RNA structure(s): 8 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 8 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 81-794, gnl|bosTau2|chr16 (24804771-24805458) | |
| 81-794, gnl|Hg17|chr15 (22770660-22774553) | |
| 81-794, gnl|Mm7|chr14 (57408715-57407994) | |
| 117-269, gnl|bosTau2|chr13 (34132737-34132585) | |
| 117-269, gnl|canFam2|chr24 (21673748-21673529) | |
| 117-269, gnl|danRer3|chr21 (20835000-20835188) | |
| 117-269, gnl|dasNov1|scaffold_41822 (380-595) | |
| 117-269, gnl|echTel1|scaffold_299251 (7056-7272) | |
| 117-269, gnl|fr1|chrUn (315641200-315641022) | |
| 117-269, gnl|galGal2|chr20 (10268068-10267859) | |
| 117-269, gnl|hg17|chr20 (2396220-2396435) | |
| 117-269, gnl|Hg17|chr20 (2396405-2396253) | |
| 117-269, gnl|loxAfr1|scaffold_30405 (8322-8543) | |
| 117-269, gnl|mm7|chr2 (129917832-129918049) | |
| 117-269, gnl|Mm7|chr2 (129918020-129917868) | |
| 117-269, gnl|monDom2|scaffold_35 (25955168-25954951) | |
| 117-269, gnl|oryCun1|scaffold_172922 (32-241) | |
| 117-269, gnl|panTro1|chr21 (2388315-2388530) | |
| 117-269, gnl|rheMac2|chr10 (35775970-35776185) | |
| 117-269, gnl|rn3|chr3 (117681205-117681420) | |
| 117-269, gnl|tetNig1|chrUn_random (86411051-86411210) | |
| 117-269, gnl|xenTro1|scaffold_316 (535459-535628) | |
| 270-380, gnl|bosTau2|chr13 (34130883-34130773) | |
| 270-380, gnl|canFam2|chr24 (21675974-21675806) | |
| 270-380, gnl|danRer3|chr21 (20833711-20833872) | |
| 270-380, gnl|dasNov1|scaffold_191595 (722-890) | |
| 270-380, gnl|echTel1|scaffold_299251 (4098-4266) | |
| 270-380, gnl|fr1|chrUn (315641440-315641293) | |
| 270-380, gnl|galGal2|chr20 (10268891-10268728) | |
| 270-380, gnl|hg17|chr20 (2394329-2394497) | |
| 270-380, gnl|Hg17|chr20 (2394465-2394355) | |
| 270-380, gnl|loxAfr1|scaffold_31570 (2921-2754) | |
| 270-380, gnl|mm7|chr2 (129916159-129916328) | |
| 270-380, gnl|Mm7|chr2 (129916294-129916184) | |
| 270-380, gnl|monDom2|scaffold_35 (25958012-25957847) | |
| 270-380, gnl|oryCun1|scaffold_203935 (1619-1466) | |
| 270-380, gnl|panTro1|chr21 (2386423-2386591) | |
| 270-380, gnl|rheMac2|chr10 (35774081-35774249) | |
| 270-380, gnl|rn3|chr3 (117679551-117679722) | |
| 270-380, gnl|tetNig1|chrUn_random (86410819-86410938) | |
| 270-380, gnl|xenTro1|scaffold_316 (535222-535368) | |
| 382-560, gnl|bosTau2|chr13 (34129101-34128925) | |
| 382-560, gnl|Hg17|chr20 (2392545-2392370) | |
| 382-560, gnl|Mm7|chr2 (129914612-129914438) | |
| 798-1203, gnl|bosTau2|chr13 (34126950-34126548) | |
| 798-1203, gnl|canFam2|chr24 (21680318-21680040) | |
| 798-1203, gnl|dasNov1|scaffold_6209 (52107-52400) | |
| 798-1203, gnl|echTel1|scaffold_225363 (6477-6180) | |
| 798-1203, gnl|Hg17|chr20 (2390587-2390187) | |
| 798-1203, gnl|hg17|chr7 (79651369-79651676) | |
| 798-1203, gnl|loxAfr1|scaffold_31570 (7331-7031) | |
| 798-1203, gnl|mm7|chr2 (129912502-129912796) | |
| 798-1203, gnl|Mm7|chr2 (129912798-129912425) | |
| 798-1203, gnl|oryCun1|scaffold_203935 (6419-6119) | |
| 798-1203, gnl|panTro1|chr6 (80871964-80872271) | |
| 798-1203, gnl|rheMac2|chr3 (136924352-136924049) | |
| 798-1203, gnl|rn3|chr3 (117676034-117676323) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-794, gnl|bosTau2|chr16 (24804771-24805458) | |
| 81-794, gnl|Hg17|chr15 (22770660-22774553) | |
| 81-794, gnl|Mm7|chr14 (57408715-57407994) | |
| 117-269, gnl|bosTau2|chr13 (34132737-34132585) | |
| 117-269, gnl|canFam2|chr24 (21673748-21673529) | |
| 117-269, gnl|danRer3|chr21 (20835000-20835188) | |
| 117-269, gnl|dasNov1|scaffold_41822 (380-595) | |
| 117-269, gnl|echTel1|scaffold_299251 (7056-7272) | |
| 117-269, gnl|fr1|chrUn (315641200-315641022) | |
| 117-269, gnl|galGal2|chr20 (10268068-10267859) | |
| 117-269, gnl|hg17|chr20 (2396220-2396435) | |
| 117-269, gnl|Hg17|chr20 (2396405-2396253) | |
| 117-269, gnl|loxAfr1|scaffold_30405 (8322-8543) | |
| 117-269, gnl|mm7|chr2 (129917832-129918049) | |
| 117-269, gnl|Mm7|chr2 (129918020-129917868) | |
| 117-269, gnl|monDom2|scaffold_35 (25955168-25954951) | |
| 117-269, gnl|oryCun1|scaffold_172922 (32-241) | |
| 117-269, gnl|panTro1|chr21 (2388315-2388530) | |
| 117-269, gnl|rheMac2|chr10 (35775970-35776185) | |
| 117-269, gnl|rn3|chr3 (117681205-117681420) | |
| 117-269, gnl|tetNig1|chrUn_random (86411051-86411210) | |
| 117-269, gnl|xenTro1|scaffold_316 (535459-535628) | |
| 270-380, gnl|bosTau2|chr13 (34130883-34130773) | |
| 270-380, gnl|canFam2|chr24 (21675974-21675806) | |
| 270-380, gnl|danRer3|chr21 (20833711-20833872) | |
| 270-380, gnl|dasNov1|scaffold_191595 (722-890) | |
| 270-380, gnl|echTel1|scaffold_299251 (4098-4266) | |
| 270-380, gnl|fr1|chrUn (315641440-315641293) | |
| 270-380, gnl|galGal2|chr20 (10268891-10268728) | |
| 270-380, gnl|hg17|chr20 (2394329-2394497) | |
| 270-380, gnl|Hg17|chr20 (2394465-2394355) | |
| 270-380, gnl|loxAfr1|scaffold_31570 (2921-2754) | |
| 270-380, gnl|mm7|chr2 (129916159-129916328) | |
| 270-380, gnl|Mm7|chr2 (129916294-129916184) | |
| 270-380, gnl|monDom2|scaffold_35 (25958012-25957847) | |
| 270-380, gnl|oryCun1|scaffold_203935 (1619-1466) | |
| 270-380, gnl|panTro1|chr21 (2386423-2386591) | |
| 270-380, gnl|rheMac2|chr10 (35774081-35774249) | |
| 270-380, gnl|rn3|chr3 (117679551-117679722) | |
| 270-380, gnl|tetNig1|chrUn_random (86410819-86410938) | |
| 270-380, gnl|xenTro1|scaffold_316 (535222-535368) | |
| 382-560, gnl|bosTau2|chr13 (34129101-34128925) | |
| 382-560, gnl|Hg17|chr20 (2392545-2392370) | |
| 382-560, gnl|Mm7|chr2 (129914612-129914438) | |
| 798-1203, gnl|bosTau2|chr13 (34126950-34126548) | |
| 798-1203, gnl|canFam2|chr24 (21680318-21680040) | |
| 798-1203, gnl|dasNov1|scaffold_6209 (52107-52400) | |
| 798-1203, gnl|echTel1|scaffold_225363 (6477-6180) | |
| 798-1203, gnl|Hg17|chr20 (2390587-2390187) | |
| 798-1203, gnl|hg17|chr7 (79651369-79651676) | |
| 798-1203, gnl|loxAfr1|scaffold_31570 (7331-7031) | |
| 798-1203, gnl|mm7|chr2 (129912502-129912796) | |
| 798-1203, gnl|Mm7|chr2 (129912798-129912425) | |
| 798-1203, gnl|oryCun1|scaffold_203935 (6419-6119) | |
| 798-1203, gnl|panTro1|chr6 (80871964-80872271) | |
| 798-1203, gnl|rheMac2|chr3 (136924352-136924049) | |
| 798-1203, gnl|rn3|chr3 (117676034-117676323) |
| Expressed library(ies): 44 entry(ies) | More info |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
| elu (0.770713) | |
| cag (0.604778) | |
| cly (0.603209) | |
| cst (0.560146) | |
| cki (0.495704) | |
| mas (0.42061) | |
| ese (0.379507) | |
| nep (0.36785) | |
| med (0.348756) | |
| jca (0.34188) | |
| nje (0.33184) | |
| nco (0.323468) | |
| csp (0.322373) | |
| eli (0.303628) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| che (0.272628) | |
| fce (0.271592) | |
| ste (0.270416) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| eep (0.245128) | |
| ecc (0.23007) | |
| hea (0.204499) | |
| jej (0.197844) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cov (0.132153) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| cag (0.604778) | |
| cly (0.603209) | |
| cst (0.560146) | |
| cki (0.495704) | |
| mas (0.42061) | |
| ese (0.379507) | |
| nep (0.36785) | |
| med (0.348756) | |
| jca (0.34188) | |
| nje (0.33184) | |
| nco (0.323468) | |
| csp (0.322373) | |
| eli (0.303628) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| che (0.272628) | |
| fce (0.271592) | |
| ste (0.270416) | |
| pla (0.267344) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| eep (0.245128) | |
| ecc (0.23007) | |
| hea (0.204499) | |
| jej (0.197844) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cov (0.132153) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |