Ss1.1-Thy1-THY010059C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGTTCAAGACCGCTTTGAACCTGAGGAAGTGAACGTAACTTGCCTTCTGGGGGTTCCT CATACTTGAAAAGCAATTTCCTTGTCACCCACAACCTCAAAAGGCCAAAGCAGAGGTAAC CATTGACCACATTTAATTGTAACGAGTCAAATTGTAGTAACTGTGAACAGTGAGTTCAAG GCGCGTCTTCTCAGTGAGTCAGTATGTGGTATTGAGTAGCCTTCCTTTGATATATGAAAT TTTAAATCATTCACTGCAAAATGCATTTAAGATCTTCCAGGAAGGTATCATTTTCTGTTT TGCTTTGTTTGAAAACAGTTGCCTCAAGTTTCTGTCTTAAGAGTAGTGATTTAGAATCCA GACCTCTTTTGTTTTAGAAAAACAAGCAAAAACTACGTTGCAAGACTGGTAGCTGTAATG TTTATTTGCCGCAGATCAAAGGTTCACAAAAATATCCTAAATTTATATCTACTTGAGGTA CCTTGATAGATTGTTTTTTTCTTCGGTCTTTCCCTTCAGGAATTTGGAGCCTCGGTGTCA ACTTTTCTTTGAAACATACGAAATTGTACAAGTTTTATTTTGCCAGATGTGTGCAGACAT ATTCAAAGCAATGAAACTATTTCAAGCCATACAAACCACAGGGATGGAAACCCTTTTCAC AAATTTTAATGTGTTTGTATGTAAATAGACGTTTGTATGAACTATTTTCATGGTAGAATG AATATATTTCAATGAAGTTGAATTATTCCAGTGCTATTTAAACAAATGACAAAAATTTTT GGTGAGAATTATCTGAGTCTATTGAGATACAATGCAGATCAATTTTGATTTTTACAAAAT CCAAAGCCTACAAATAACTCTGACTCATGGCAACTTCCCCGTGTCGTTGCACCTGACGTG GAGACAGCTCGTAGGCTTCCCCAGTGCCTCAGCCGCTTCCTGGTGGAAGTTAGGTGCTCG TGGAGGTGTGTCCACCTTTTAGAGACATCGCTCCAGGCCCCTTTGGGGGCCTGAGAGTGA ATCAGAGGCATTAGAGACACCGGTGCAGTTATCCAGAGCACAATTTCTTTGCAGGGCAGC AGAATCAGAAGCCAGACATGGCCGTGTGACCCTGGGAACTGGGTTTTCTGGCCGCCGTCT ACCGCCACCCTTACTGCCTAGTCACACACGTCAGGGAGGCTGCCCTCTGTGGAGTTGGGG CTCACACCCCTGGGGTGGGACTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGTTCAAGACCGCTTTGAACCTGAGGAAGTGAACGTAACTTGCCTTCTGGGGGTTCCT CATACTTGAAAAGCAATTTCCTTGTCACCCACAACCTCAAAAGGCCAAAGCAGAGGTAAC CATTGACCACATTTAATTGTAACGAGTCAAATTGTAGTAACTGTGAACAGTGAGTTCAAG GCGCGTCTTCTCAGTGAGTCAGTATGTGGTATTGAGTAGCCTTCCTTTGATATATGAAAT TTTAAATCATTCACTGCAAAATGCATTTAAGATCTTCCAGGAAGGTATCATTTTCTGTTT TGCTTTGTTTGAAAACAGTTGCCTCAAGTTTCTGTCTTAAGAGTAGTGATTTAGAATCCA GACCTCTTTTGTTTTAGAAAAACAAGCAAAAACTACGTTGCAAGACTGGTAGCTGTAATG TTTATTTGCCGCAGATCAAAGGTTCACAAAAATATCCTAAATTTATATCTACTTGAGGTA CCTTGATAGATTGTTTTTTTCTTCGGTCTTTCCCTTCAGGAATTTGGAGCCTCGGTGTCA ACTTTTCTTTGAAACATACGAAATTGTACAAGTTTTATTTTGCCAGATGTGTGCAGACAT ATTCAAAGCAATGAAACTATTTCAAGCCATACAAACCACAGGGATGGAAACCCTTTTCAC AAATTTTAATGTGTTTGTATGTAAATAGACGTTTGTATGAACTATTTTCATGGTAGAATG AATATATTTCAATGAAGTTGAATTATTCCAGTGCTATTTAAACAAATGACAAAAATTTTT GGTGAGAATTATCTGAGTCTATTGAGATACAATGCAGATCAATTTTGATTTTTACAAAAT CCAAAGCCTACAAATAACTCTGACTCATGGCAACTTCCCCGTGTCGTTGCACCTGACGTG GAGACAGCTCGTAGGCTTCCCCAGTGCCTCAGCCGCTTCCTGGTGGAAGTTAGGTGCTCG TGGAGGTGTGTCCACCTTTTAGAGACATCGCTCCAGGCCCCTTTGGGGGCCTGAGAGTGA ATCAGAGGCATTAGAGACACCGGTGCAGTTATCCAGAGCACAATTTCTTTGCAGGGCAGC AGAATCAGAAGCCAGACATGGCCGTGTGACCCTGGGAACTGGGTTTTCTGGCCGCCGTCT ACCGCCACCCTTACTGCCTAGTCACACACGTCAGGGAGGCTGCCCTCTGTGGAGTTGGGG CTCACACCCCTGGGGTGGGACTTC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 669-788, - strand, RNAz p=0.974605 | |
| 908-1065, - strand, RNAz p=0.989096 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 669-788, - strand, RNAz p=0.974605 | |
| 908-1065, - strand, RNAz p=0.989096 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 669-788, AV589807 Bos taurus brain fetus Bos taurus cDNA clone E1BR008F07 (dbj|AV589807.1|), blast E-value=0, identity=95.83% | |
| 669-788, BP162193 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP162193.1|), blast E-value=0, identity=100% | |
| 669-788, UI-M-AQ0-cit-f-03-0-UI.s1 NIH_BMAP_MHI Mus musculus cDNA clone (gb|CD774715.1|), blast E-value=0, identity=95% | |
| 669-788, A0841G09-5 NIA Mouse E13.5 whole embryo cDNA library (Long) Mus (gb|CN666541.1|), blast E-value=0, identity=95% | |
| 669-788, LB02621.CR_I14 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV881978.1|), blast E-value=0, identity=96.67% | |
| 669-788, sh1-bcm12_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, (gb|DY482255.1|), blast E-value=0, identity=96.67% | |
| 908-1065, BP162193 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP162193.1|), blast E-value=0, identity=100% | |
| 908-1065, DA046803 BNGH41 Homo sapiens cDNA clone BNGH41000063 5', mRNA (dbj|DA046803.1|), blast E-value=0, identity=92.45% | |
| 908-1065, DA367334 BRSTN2 Homo sapiens cDNA clone BRSTN2015522 5', mRNA (dbj|DA367334.1|), blast E-value=0, identity=92.45% | |
| 908-1065, AGENCOURT_10615157 NIH_MGC_107 Homo sapiens cDNA clone (gb|BU956500.1|), blast E-value=0, identity=92.45% | |
| 908-1065, MMSP0039_F01 MMSP Macaca mulatta cDNA, mRNA sequence (gb|CB551442.1|), blast E-value=0, identity=92.45% | |
| 908-1065, 295053 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb|EB521340.1|), blast E-value=0, identity=92.45% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 669-788, AV589807 Bos taurus brain fetus Bos taurus cDNA clone E1BR008F07 (dbj|AV589807.1|), blast E-value=0, identity=95.83% | |
| 669-788, BP162193 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP162193.1|), blast E-value=0, identity=100% | |
| 669-788, UI-M-AQ0-cit-f-03-0-UI.s1 NIH_BMAP_MHI Mus musculus cDNA clone (gb|CD774715.1|), blast E-value=0, identity=95% | |
| 669-788, A0841G09-5 NIA Mouse E13.5 whole embryo cDNA library (Long) Mus (gb|CN666541.1|), blast E-value=0, identity=95% | |
| 669-788, LB02621.CR_I14 GC_BGC-26 Bos taurus cDNA clone IMAGE (gb|DV881978.1|), blast E-value=0, identity=96.67% | |
| 669-788, sh1-bcm12_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, (gb|DY482255.1|), blast E-value=0, identity=96.67% | |
| 908-1065, BP162193 full-length enriched swine cDNA library, adult thymus Sus (dbj|BP162193.1|), blast E-value=0, identity=100% | |
| 908-1065, DA046803 BNGH41 Homo sapiens cDNA clone BNGH41000063 5', mRNA (dbj|DA046803.1|), blast E-value=0, identity=92.45% | |
| 908-1065, DA367334 BRSTN2 Homo sapiens cDNA clone BRSTN2015522 5', mRNA (dbj|DA367334.1|), blast E-value=0, identity=92.45% | |
| 908-1065, AGENCOURT_10615157 NIH_MGC_107 Homo sapiens cDNA clone (gb|BU956500.1|), blast E-value=0, identity=92.45% | |
| 908-1065, MMSP0039_F01 MMSP Macaca mulatta cDNA, mRNA sequence (gb|CB551442.1|), blast E-value=0, identity=92.45% | |
| 908-1065, 295053 Pigtailed macaque ovary library Macaca nemestrina cDNA 5', (gb|EB521340.1|), blast E-value=0, identity=92.45% |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 1-1224, gnl|bosTau2|chr17 (11286586-11287819) | |
| 1-1224, gnl|Hg17|chr4 (140787057-140785811) | |
| 1-1224, gnl|Mm7|chr3 (51642300-51640859) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1224, gnl|bosTau2|chr17 (11286586-11287819) | |
| 1-1224, gnl|Hg17|chr4 (140787057-140785811) | |
| 1-1224, gnl|Mm7|chr3 (51642300-51640859) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ste (0.135208) | |
| ute (0.132784) |