Non-Coding RNA Search

Ss1.1-Thy1-THY010060A04.5

Sequence:


               
               TATGTCCTTGTAGCGCGGCTCGGGACACGAGTTCAGCCGGTCGGTCCGAGCAGCCTGGCG
GCTGGAATTCTGAGGGTCCAGCGGGCGGCGATCACCATGTTGTGCAGGGCGGCGTGCAGC
TCGAGCAGGAATCTGGTGCCGGCTTTGGGGGTCCTGGGTTCCCGGCAGAAGCACACCCTC
CCCGACCTGCCGTACGACTATGGCGCCCTGGAGCCGCACATCAACGCCCAGATCATGCAG
CTGCACCACAGCAAGCACCACGCGGCCTACGTGAACAACCTGAACGTCGTGGAGGAGAAG
TACCAGGAGGCGCTGAAAAAGGGTGATGTTACAGCTCAGGTAGCTCTGCAGCCTGCATTG
AAGTTCAACGGTGGAGGCCACATCAATCATAGCATTTTCTGGACAAATCTGAGCCCTAAC
GGTGGCGGGGAACCCAAAGGGGAATTGCTGGAAGCCATCAAACGCGACTTTGGTTCCTTC
GAAAAATTCAAGGAGAAGTTGACCGCTGTATCCGTCGGCGTCCAAGGCTCAGGCTGGGGT
TGGCTCGGTTTCAACAAGGAACAGGGCCGCTTGCAGATTGCCGCTTGTTCTAACCAGGAT
CCCCTGCAAGGAACAACAGGTCTGGTTCCGCTGCTGGGGATCGACGTGTGGGAGCATGCG
TATTACCTTCAGTATAAAAACGTCAGACCTGATTACCTGAAAGCTATTTGGAATGTAATC
AACTGGGAGAATGTAACTGAGCGATACACCGCTTGCAAAAAGTAAAACAGCAGCCTCACA
CCGAGTACATCAAGCTCTTTGGGGCTGTTTTTGTAGGAGCGCCGAATACCGCAGGGTACC
AATAAGCTGCTCTATTGTAGTGTTTCTGAATGCGGCTTGTTCAGGTATTTGATAAACACA
ATGTAGTGCCATGAAGAATTTCTTTTAAAATTTGATTATTAGGCAACTGTTTGAAAATGT
TAAATGCTTCGTATGATGTTGTCTTTCGAATGTTTTCCTCAAAGAGTGGAAAGAGCCAGG
AGGTTATAAAACCATCCCAAACCATCATAAAACCATCAAAAATGTTTCATCCCTCTACTG
TTGGGGCCTCTAGGGAAGGCTTTCTAATCCTGTTCTGTTGCAGTTACAGAAAATCTAGTC
TTTTGCCCCAGTTGTTTAATAATAAAATACTAAATTTATTTCCCAAGGGAAATACTCCGT
TTTCTATTGAAAATTGCTCTTTTTGTAAGTAATTCTCTGTCCAGTATTACTTCAGGCAGG
TACCACCCAGTGGTCTTTAGTTACTTAGAAGTGATCACATGTTACCCAGGGTTAACACTA
TCCATTTTGTCATTAAAAATATATAACTTGTTTGCTAATGAGAATTACTTTATTATGAGG
AGGAGATGGTAGTACTTCTGAATTTTTCTGTAGAGAGAAAATAAAGACTTTTGTGAAATT
TTGTCCTCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTCCTTGTAGCGCGGCTCGGGACACGAGTTCAGCCGGTCGGTCCGAGCAGCCTGGCG
GCTGGAATTCTGAGGGTCCAGCGGGCGGCGATCACCATGTTGTGCAGGGCGGCGTGCAGC
TCGAGCAGGAATCTGGTGCCGGCTTTGGGGGTCCTGGGTTCCCGGCAGAAGCACACCCTC
CCCGACCTGCCGTACGACTATGGCGCCCTGGAGCCGCACATCAACGCCCAGATCATGCAG
CTGCACCACAGCAAGCACCACGCGGCCTACGTGAACAACCTGAACGTCGTGGAGGAGAAG
TACCAGGAGGCGCTGAAAAAGGGTGATGTTACAGCTCAGGTAGCTCTGCAGCCTGCATTG
AAGTTCAACGGTGGAGGCCACATCAATCATAGCATTTTCTGGACAAATCTGAGCCCTAAC
GGTGGCGGGGAACCCAAAGGGGAATTGCTGGAAGCCATCAAACGCGACTTTGGTTCCTTC
GAAAAATTCAAGGAGAAGTTGACCGCTGTATCCGTCGGCGTCCAAGGCTCAGGCTGGGGT
TGGCTCGGTTTCAACAAGGAACAGGGCCGCTTGCAGATTGCCGCTTGTTCTAACCAGGAT
CCCCTGCAAGGAACAACAGGTCTGGTTCCGCTGCTGGGGATCGACGTGTGGGAGCATGCG
TATTACCTTCAGTATAAAAACGTCAGACCTGATTACCTGAAAGCTATTTGGAATGTAATC
AACTGGGAGAATGTAACTGAGCGATACACCGCTTGCAAAAAGTAAAACAGCAGCCTCACA
CCGAGTACATCAAGCTCTTTGGGGCTGTTTTTGTAGGAGCGCCGAATACCGCAGGGTACC
AATAAGCTGCTCTATTGTAGTGTTTCTGAATGCGGCTTGTTCAGGTATTTGATAAACACA
ATGTAGTGCCATGAAGAATTTCTTTTAAAATTTGATTATTAGGCAACTGTTTGAAAATGT
TAAATGCTTCGTATGATGTTGTCTTTCGAATGTTTTCCTCAAAGAGTGGAAAGAGCCAGG
AGGTTATAAAACCATCCCAAACCATCATAAAACCATCAAAAATGTTTCATCCCTCTACTG
TTGGGGCCTCTAGGGAAGGCTTTCTAATCCTGTTCTGTTGCAGTTACAGAAAATCTAGTC
TTTTGCCCCAGTTGTTTAATAATAAAATACTAAATTTATTTCCCAAGGGAAATACTCCGT
TTTCTATTGAAAATTGCTCTTTTTGTAAGTAATTCTCTGTCCAGTATTACTTCAGGCAGG
TACCACCCAGTGGTCTTTAGTTACTTAGAAGTGATCACATGTTACCCAGGGTTAACACTA
TCCATTTTGTCATTAAAAATATATAACTTGTTTGCTAATGAGAATTACTTTATTATGAGG
AGGAGATGGTAGTACTTCTGAATTTTTCTGTAGAGAGAAAATAAAGACTTTTGTGAAATT
TTGTCCTCACAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|498260|gb|AAA30655.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|498260|gb|AAA30655.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               115-325, gnl|bosTau2|chr9 (55522618-55522408)
               

               
               115-325, gnl|Hg17|chr6 (160084311-160084101)
               

               
               115-325, gnl|Mm7|chr17 (11753931-11753714)
               


               
               614-1445, gnl|bosTau2|chr9 (55514393-55513590)
               

               
               614-1445, gnl|Mm7|chr17 (11747083-11746214)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-325, gnl|bosTau2|chr9 (55522618-55522408)
               

               
               115-325, gnl|Hg17|chr6 (160084311-160084101)
               

               
               115-325, gnl|Mm7|chr17 (11753931-11753714)
               


               
               614-1445, gnl|bosTau2|chr9 (55514393-55513590)
               

               
               614-1445, gnl|Mm7|chr17 (11747083-11746214)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               hea (1.02249)
               

               
               mga (0.96123)
               

               
               pro (0.512033)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               nlu (0.383362)
               

               
               rec (0.346141)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (1.02249)
               

               
               mga (0.96123)
               

               
               pro (0.512033)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               nlu (0.383362)
               

               
               rec (0.346141)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	115-325, gnl\|bosTau2\|chr9 (55522618-55522408)
	115-325, gnl\|Hg17\|chr6 (160084311-160084101)
	115-325, gnl\|Mm7\|chr17 (11753931-11753714)

	614-1445, gnl\|bosTau2\|chr9 (55514393-55513590)
	614-1445, gnl\|Mm7\|chr17 (11747083-11746214)

	hea (1.02249)
	mga (0.96123)
	pro (0.512033)
	ssp (0.406559)
	ste (0.405625)
	nlu (0.383362)
	rec (0.346141)
	cbl (0.344392)
	vin (0.332557)
	sme (0.305437)
	lin (0.291206)
	mas (0.210305)
	fcc (0.197785)
	nep (0.183925)
	ton (0.1755)
	sin (0.174948)
	nje (0.16592)
	nco (0.161734)
	tbr (0.154178)
	lun (0.150489)
	spl (0.143184)
	che (0.136314)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	cly (0.120642)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	eje (0.0988338)