Non-Coding RNA Search

Ss1.1-Thy1-THY010060B03.5

Sequence:


               
               GACGCATTTGGACAGAGTCTCGGGCGTCCTTGTCTCCACCATCTGCATCATAGTACACAC
TCATGTCCACATCCCAGTCATCAGCTGTCTGTTCATCAAAGTCTCCTTCCTCCTCCTGCC
AGAACTGGGCATCAGTGTAGAACACCAGCCCGGAGCCGCCCTTCTCCCACTTGAGCTCGA
TCTCCTCCTCAAAGAGCCGCTCAGTGGTCCGCTCCTGCCTGGTCACGTCCTCATGCAGTG
CTTCGTGCCGCTCCCACTCCTCGCCCCGGTCATCATCATCATCTGAGTGTGATTCTTCTT
CCTCTTCCTTTTCTCTTTCTTCCTCCACCTCTCCACAGGGGCTGGCTAGTACATCTGCCA
GGCAGGTTCCCTGGGGTATTTCCTCACCCTTGGCTGTGTATACAAGCTCTTCCTGCTCCA
CAGTCTCTGAGTCCTCATACTTGAAAGGCACATTGCCGTAGCGCCGGGAGGAACCTGTCT
TGGGGAACTGGAGCTGCAGCTGGGTGATGATCCGAGGGGGTAGGCGGCAGGCCCGGATCA
ACTCCAAAAAGACCTGAAGGGGAGTCCCCACATTCCCTCTGGGCATCAGCACTGGTGGGT
TCAACTCTGGCAGTTGTCTCAGGTCGGCCAGTGTGAAGGCTTCACTTGTAGCCTTCCGAC
TCTGCAGTTCTTTCCGGGTCTTGAAGGGAAAGGAGTCCAGACCTGATGTCTCAGTAGGTA
GTCGAAGTCTGCGGATGACACAACAACCAGGTAACCAAGTCCCCTGAGAATCCAGCCACC
GGCGGCCGGAGTACATGCGGAGAAACCTCTGGGCTTGAGCTTCCCCCCGTATGGAGACCA
CGCAGCAGCAGGTGTGGGGCTGGGCGGGAGCAGAGTCCTGAGTGGAGAGAGCACGGGCAT
CTTTGACTGAAGTCTGGGCGAGACCCTGGCCGAGAGGAGTTAGGGCAGAATCCGGAGGAG
CCCGGGAAGGGGCCCTCTCCGGCCGATGCCGGTAGTGGAAACAAATGAAGCCACAGCCGC
GTTCTTCCCGGAACTGGCTAAAGTAATTCCGTAGCTGGGCTGAACGCAACGCCGAAGGGA
TACCACTCACTATCAGATAAACTGCTGCCTCTTCTTCCGCCTCGCTGGACACTGCCATCT
TAGATGTCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGCATTTGGACAGAGTCTCGGGCGTCCTTGTCTCCACCATCTGCATCATAGTACACAC
TCATGTCCACATCCCAGTCATCAGCTGTCTGTTCATCAAAGTCTCCTTCCTCCTCCTGCC
AGAACTGGGCATCAGTGTAGAACACCAGCCCGGAGCCGCCCTTCTCCCACTTGAGCTCGA
TCTCCTCCTCAAAGAGCCGCTCAGTGGTCCGCTCCTGCCTGGTCACGTCCTCATGCAGTG
CTTCGTGCCGCTCCCACTCCTCGCCCCGGTCATCATCATCATCTGAGTGTGATTCTTCTT
CCTCTTCCTTTTCTCTTTCTTCCTCCACCTCTCCACAGGGGCTGGCTAGTACATCTGCCA
GGCAGGTTCCCTGGGGTATTTCCTCACCCTTGGCTGTGTATACAAGCTCTTCCTGCTCCA
CAGTCTCTGAGTCCTCATACTTGAAAGGCACATTGCCGTAGCGCCGGGAGGAACCTGTCT
TGGGGAACTGGAGCTGCAGCTGGGTGATGATCCGAGGGGGTAGGCGGCAGGCCCGGATCA
ACTCCAAAAAGACCTGAAGGGGAGTCCCCACATTCCCTCTGGGCATCAGCACTGGTGGGT
TCAACTCTGGCAGTTGTCTCAGGTCGGCCAGTGTGAAGGCTTCACTTGTAGCCTTCCGAC
TCTGCAGTTCTTTCCGGGTCTTGAAGGGAAAGGAGTCCAGACCTGATGTCTCAGTAGGTA
GTCGAAGTCTGCGGATGACACAACAACCAGGTAACCAAGTCCCCTGAGAATCCAGCCACC
GGCGGCCGGAGTACATGCGGAGAAACCTCTGGGCTTGAGCTTCCCCCCGTATGGAGACCA
CGCAGCAGCAGGTGTGGGGCTGGGCGGGAGCAGAGTCCTGAGTGGAGAGAGCACGGGCAT
CTTTGACTGAAGTCTGGGCGAGACCCTGGCCGAGAGGAGTTAGGGCAGAATCCGGAGGAG
CCCGGGAAGGGGCCCTCTCCGGCCGATGCCGGTAGTGGAAACAAATGAAGCCACAGCCGC
GTTCTTCCCGGAACTGGCTAAAGTAATTCCGTAGCTGGGCTGAACGCAACGCCGAAGGGA
TACCACTCACTATCAGATAAACTGCTGCCTCTTCTTCCGCCTCGCTGGACACTGCCATCT
TAGATGTCACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61880217|ref|XP_614886.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61880217|ref|XP_614886.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               103-277, gnl|bosTau2|chr2 (79440013-79439839)
               

               
               103-277, gnl|Hg17|chr1 (26904869-26905043)
               

               
               103-277, gnl|Mm7|chr4 (132958393-132958219)
               


               
               701-1152, gnl|bosTau2|chr2 (79436438-79435987)
               

               
               701-1152, gnl|Hg17|chr1 (26910623-26911090)
               

               
               701-1152, gnl|Mm7|chr4 (132953645-132953178)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-277, gnl|bosTau2|chr2 (79440013-79439839)
               

               
               103-277, gnl|Hg17|chr1 (26904869-26905043)
               

               
               103-277, gnl|Mm7|chr4 (132958393-132958219)
               


               
               701-1152, gnl|bosTau2|chr2 (79436438-79435987)
               

               
               701-1152, gnl|Hg17|chr1 (26910623-26911090)
               

               
               701-1152, gnl|Mm7|chr4 (132953645-132953178)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	103-277, gnl\|bosTau2\|chr2 (79440013-79439839)
	103-277, gnl\|Hg17\|chr1 (26904869-26905043)
	103-277, gnl\|Mm7\|chr4 (132958393-132958219)

	701-1152, gnl\|bosTau2\|chr2 (79436438-79435987)
	701-1152, gnl\|Hg17\|chr1 (26910623-26911090)
	701-1152, gnl\|Mm7\|chr4 (132953645-132953178)