Non-Coding RNA Search

Ss1.1-Thy1-THY010060F01.5

Sequence:


               
               CTGTGTATATATAAACTTATAAATTTGCTGGGACATTTTGGTACTTTTAAGTAGTTTTCG
AATGGAGGCAAA------------------------------------------------
------------------------------------------------------------
AATATCTCATAGTGTATAAGGTCCCGTGACAGTTATCTGGTCCACAATATTAGTAGTGCT
AAAGTTGAGAAATACTGCTTTGAATGATAAAAATAGAGTAATTCTTAGGAGCAGTCTGAA
TTTATAAAACTTCAATCTTATTTTCTGTTTCTTAGATGAATCTGTCAGTATTTACCAGTA
GGAAAACTTGCTTCTTTGTTACAGTATTGAAGATTAATTGACATTTAAAAGGTTTCTTCC
TGAAATGCTAACTTCTTCCTTTTATTTGGTATTTTCTGTTCCAGGGATGGTATTTTCATT
ACAGGTATATTATTTCTGTTTCCCTACAAATTGGAAGAGTTGCTCTACATTTGAAGTTAC
TCATTAGAAAACTTAAAATATCCACTGAATTTCAGATCTGATCGTTAACAATAGCTCTTT
TTGCACTAAAATTAATTGATGATTTATGTCACTTTGTTGATCTTCGAAAAACTCTTCAGT
AGTTTCCATTTCTACCCCCTCACAGTTTTTGACGATGGAGATGAAAAGACACTGAGACGC
TCTTCACTGTGCCTGAAAGGGGAGAGGCATTTTGCTGAAAGTGAAGTAAGTAATCACTTA
ATGAGTGAACATATCTTAATATCATATATTGAGCAGCACATTTTTGCTTTCTCAACTCAA
GCAACTTGTTAATCAGGAAAATGCATTATTGCATAAAACCATTAAAGTATAATCTCTGAA
ATCTGTTTAAGGCTTTATGTTTAAATACCAGGTTCTGTATTCTTTTTTGTCTGAAAGCAT
TTGTAACATTTGTCCATGAAGAAAATATAATGGGATTGTTTAACTATTATCATTAGGCAG
CTTTTATTATAGACTCCTTTAACTTAATTGTAGAAAAGAGATGTCTGACTTGTAATTCAT
TTGAACCCTGTCATCATTAAAGGATATGTGGATACTACAAGCAATCCCTAACTACAGTTG
CTACTAAGAGCTGACATAATTTATTGCAGCCTCTCCTCAAGAAGGTTTGCCTGACTGCCC
TTTCTAAAACAGTCCCTTCCATTCCTCATGATCCTTTTAGGTTGAATTAGTTTTCTTTAT
AGCATGTATTGTTCTTACCACTAAAAATATGTGTATGTGCTTAATTATTTATTATCTGCT
TTCTTCACTAGAATGTGTTGTGATGGCAGAGATTGTGTATGTCTTCTTCAGCACTTTGAT
CCGAGTTCCTAGAACAGTGCCTGGCACAGAGTAGAAACTGAATAAATG------------
------------CTTATGTTTGTCAGGGACTTTTTTTAGTGCTTTCCACACATTATCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGTATATATAAACTTATAAATTTGCTGGGACATTTTGGTACTTTTAAGTAGTTTTCG
AATGGAGGCAAA------------------------------------------------
------------------------------------------------------------
AATATCTCATAGTGTATAAGGTCCCGTGACAGTTATCTGGTCCACAATATTAGTAGTGCT
AAAGTTGAGAAATACTGCTTTGAATGATAAAAATAGAGTAATTCTTAGGAGCAGTCTGAA
TTTATAAAACTTCAATCTTATTTTCTGTTTCTTAGATGAATCTGTCAGTATTTACCAGTA
GGAAAACTTGCTTCTTTGTTACAGTATTGAAGATTAATTGACATTTAAAAGGTTTCTTCC
TGAAATGCTAACTTCTTCCTTTTATTTGGTATTTTCTGTTCCAGGGATGGTATTTTCATT
ACAGGTATATTATTTCTGTTTCCCTACAAATTGGAAGAGTTGCTCTACATTTGAAGTTAC
TCATTAGAAAACTTAAAATATCCACTGAATTTCAGATCTGATCGTTAACAATAGCTCTTT
TTGCACTAAAATTAATTGATGATTTATGTCACTTTGTTGATCTTCGAAAAACTCTTCAGT
AGTTTCCATTTCTACCCCCTCACAGTTTTTGACGATGGAGATGAAAAGACACTGAGACGC
TCTTCACTGTGCCTGAAAGGGGAGAGGCATTTTGCTGAAAGTGAAGTAAGTAATCACTTA
ATGAGTGAACATATCTTAATATCATATATTGAGCAGCACATTTTTGCTTTCTCAACTCAA
GCAACTTGTTAATCAGGAAAATGCATTATTGCATAAAACCATTAAAGTATAATCTCTGAA
ATCTGTTTAAGGCTTTATGTTTAAATACCAGGTTCTGTATTCTTTTTTGTCTGAAAGCAT
TTGTAACATTTGTCCATGAAGAAAATATAATGGGATTGTTTAACTATTATCATTAGGCAG
CTTTTATTATAGACTCCTTTAACTTAATTGTAGAAAAGAGATGTCTGACTTGTAATTCAT
TTGAACCCTGTCATCATTAAAGGATATGTGGATACTACAAGCAATCCCTAACTACAGTTG
CTACTAAGAGCTGACATAATTTATTGCAGCCTCTCCTCAAGAAGGTTTGCCTGACTGCCC
TTTCTAAAACAGTCCCTTCCATTCCTCATGATCCTTTTAGGTTGAATTAGTTTTCTTTAT
AGCATGTATTGTTCTTACCACTAAAAATATGTGTATGTGCTTAATTATTTATTATCTGCT
TTCTTCACTAGAATGTGTTGTGATGGCAGAGATTGTGTATGTCTTCTTCAGCACTTTGAT
CCGAGTTCCTAGAACAGTGCCTGGCACAGAGTAGAAACTGAATAAATG------------
------------CTTATGTTTGTCAGGGACTTTTTTTAGTGCTTTCCACACATTATCATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               318-514, - strand, RNAz p=0.952213
               

               
               697-814, - strand, RNAz p=0.845864

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-514, - strand, RNAz p=0.952213
               

               
               697-814, - strand, RNAz p=0.845864

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               162-1318, gnl|bosTau2|chr28 (2225013-2226168)
               

               
               162-1318, gnl|Hg17|chr1 (231742588-231741454)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               162-1318, gnl|bosTau2|chr28 (2225013-2226168)
               

               
               162-1318, gnl|Hg17|chr1 (231742588-231741454)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	318-514, - strand, RNAz p=0.952213
	697-814, - strand, RNAz p=0.845864

	162-1318, gnl\|bosTau2\|chr28 (2225013-2226168)
	162-1318, gnl\|Hg17\|chr1 (231742588-231741454)