Ss1.1-Thy1-THY010060G07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGATTCTCTGTTTTGGGCCCTACAACCATGGCGGTGCTGTCGGTCCTTGTGCGCGGCGC CTGCGGGCGCAGCCTCCTGCTTCGAAGGCGGATGCAGGAAATAAGATATGTGGAGCGAAG TTATGTATCAAAACCCACTTTGAATGAAGTGGTCATAGTAAGTGCTACAAGGACGCCCAT TGGATCCTTTCTAGGCAGCCTTTCCTCTCTGCCAGCCACTAAGCTGGGTTCCATTGCTAT TCAGGGAGCCATTGAAAAGGCAGGGATTCCAAAAGAAGAAGTGAAAGAAGTGTACATGGG CAATGTTCTGCAGGGAGGAGAAGGACAAGCCCCTACAAGGCAAGCGGTACTGGGTGCAGG CTTACCTATTTCTACTCCGTGCACCACGATAAACAAAGTTTGTGCCTCAGGAATGAAAGC CATCATGATGGCCTCTCAGAATCTTATGTGTGGACATCAGGATGTAATGGTGGCAGGTGG AATGGAGAGCATGTCCAACGTCCCCTATGTGATGGACAGAGGAACAACACCCTACGGTGG GGTAAAGCTTGAAGATTTGATTGTAAAAGATGGGCTCACTGATGTCTACAATAAAATTCA TATGGGTAACTGTGCTGAAAATACTGCAAAGAAGCTGAATATTCCACGTGATGAACAAGA CACCTACGCTATTAACTCCTACACCAGAAGTAAAGCAGCATGGGAAGCCGGAAAATTTCG AAGTGAAGTTATTCCCGTCACAATTTCAGTAAAAGGTAAACCAGATACAGTGGTCAAAGA AGATGAAGAATATAAACGTGTTGATTTTAATAAAGTTCCAAAGCTGAAGACGGTTTTCCA AAAAGAAAACGGTACAGTAACAGCTGCCAATGCCAGCACATTGAATGATGGAGCAGCTGC TGTGGTTCTTATGACTGCAGATGCAGCCAAGAGGCTCAATGTTAAACCACTAGCAAGAAT AGCAGCATTTGCTGATGCTGCTGTAGATCCTATTGATTTTCCAATTGCACCTGCATATGC TGTACCTAAGGTTCTAAAAGATGCAGGATTGAAAAAAGAAGATGTTACAATGTGGGAAGT AAATGAAGCCTTTAGTGTGGTTGTTTTAGCAAACATTAAAATGCTAGAGATTGATCCCCA AAAAGTGAATATCAATGGAGGAGCTGTTTCTCTTGGACATCCAATTGGGATGTCTGGAGC CAGGATTGTCGTTCACTTGGCTCATGCCTTGAAGCAAGGAGAATATGGTCTTGCCAGTAT TTGCAACGGAGGAGGAGGGGCTTCTGCCATGCTGATCCAGAAGCTGTAGACAACTTCTTT TGTCTAAGGTGACAGCCCTGTGTAGCTAGAAATGCCTGCTATGATCCAGGTGACTGATTA CCCTGAATCGGCTTGTATTAAAATGATGTTTCATTGATTTAACTCTTTGTAAAAAATAAT ATAAAAAAATCAAATCCCCAAACATTTTGAGATTACAAATGTATTTTTCTTCTGCTTTAA GTTTTTTGTCATCTTTAATACTTTTTGTTATAAAGCTATAGATAACTGTTTGAAATAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGATTCTCTGTTTTGGGCCCTACAACCATGGCGGTGCTGTCGGTCCTTGTGCGCGGCGC CTGCGGGCGCAGCCTCCTGCTTCGAAGGCGGATGCAGGAAATAAGATATGTGGAGCGAAG TTATGTATCAAAACCCACTTTGAATGAAGTGGTCATAGTAAGTGCTACAAGGACGCCCAT TGGATCCTTTCTAGGCAGCCTTTCCTCTCTGCCAGCCACTAAGCTGGGTTCCATTGCTAT TCAGGGAGCCATTGAAAAGGCAGGGATTCCAAAAGAAGAAGTGAAAGAAGTGTACATGGG CAATGTTCTGCAGGGAGGAGAAGGACAAGCCCCTACAAGGCAAGCGGTACTGGGTGCAGG CTTACCTATTTCTACTCCGTGCACCACGATAAACAAAGTTTGTGCCTCAGGAATGAAAGC CATCATGATGGCCTCTCAGAATCTTATGTGTGGACATCAGGATGTAATGGTGGCAGGTGG AATGGAGAGCATGTCCAACGTCCCCTATGTGATGGACAGAGGAACAACACCCTACGGTGG GGTAAAGCTTGAAGATTTGATTGTAAAAGATGGGCTCACTGATGTCTACAATAAAATTCA TATGGGTAACTGTGCTGAAAATACTGCAAAGAAGCTGAATATTCCACGTGATGAACAAGA CACCTACGCTATTAACTCCTACACCAGAAGTAAAGCAGCATGGGAAGCCGGAAAATTTCG AAGTGAAGTTATTCCCGTCACAATTTCAGTAAAAGGTAAACCAGATACAGTGGTCAAAGA AGATGAAGAATATAAACGTGTTGATTTTAATAAAGTTCCAAAGCTGAAGACGGTTTTCCA AAAAGAAAACGGTACAGTAACAGCTGCCAATGCCAGCACATTGAATGATGGAGCAGCTGC TGTGGTTCTTATGACTGCAGATGCAGCCAAGAGGCTCAATGTTAAACCACTAGCAAGAAT AGCAGCATTTGCTGATGCTGCTGTAGATCCTATTGATTTTCCAATTGCACCTGCATATGC TGTACCTAAGGTTCTAAAAGATGCAGGATTGAAAAAAGAAGATGTTACAATGTGGGAAGT AAATGAAGCCTTTAGTGTGGTTGTTTTAGCAAACATTAAAATGCTAGAGATTGATCCCCA AAAAGTGAATATCAATGGAGGAGCTGTTTCTCTTGGACATCCAATTGGGATGTCTGGAGC CAGGATTGTCGTTCACTTGGCTCATGCCTTGAAGCAAGGAGAATATGGTCTTGCCAGTAT TTGCAACGGAGGAGGAGGGGCTTCTGCCATGCTGATCCAGAAGCTGTAGACAACTTCTTT TGTCTAAGGTGACAGCCCTGTGTAGCTAGAAATGCCTGCTATGATCCAGGTGACTGATTA CCCTGAATCGGCTTGTATTAAAATGATGTTTCATTGATTTAACTCTTTGTAAAAAATAAT ATAAAAAAATCAAATCCCCAAACATTTTGAGATTACAAATGTATTTTTCTTCTGCTTTAA GTTTTTTGTCATCTTTAATACTTTTTGTTATAAAGCTATAGATAACTGTTTGAAATAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 851-965, - strand, RNAz p=0.966283 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 851-965, - strand, RNAz p=0.966283 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 146-264, gnl|bosTau2|chr15 (5970404-5970286) | |
| 146-264, gnl|Hg17|chr11 (107509757-107509875) | |
| 146-264, gnl|Mm7|chr9 (53574083-53573965) | |
| 444-605, gnl|bosTau2|chr15 (5966340-5966178) | |
| 444-605, gnl|canFam2|chr5 (27378532-27378348) | |
| 444-605, gnl|danRer3|chr25 (8919109-8918939) | |
| 444-605, gnl|fr1|chrUn (274460081-274459920) | |
| 444-605, gnl|galGal2|chr1 (172305934-172305751) | |
| 444-605, gnl|hg17|chr11 (107514796-107514987) | |
| 444-605, gnl|Hg17|chr11 (107514816-107514979) | |
| 444-605, gnl|loxAfr1|scaffold_8323 (55199-55388) | |
| 444-605, gnl|mm7|chr9 (53570833-53570644) | |
| 444-605, gnl|Mm7|chr9 (53570812-53570650) | |
| 444-605, gnl|monDom2|scaffold_2 (134820265-134820065) | |
| 444-605, gnl|oryCun1|scaffold_112908 (4424-4236) | |
| 444-605, gnl|panTro1|chr9 (109473278-109473469) | |
| 444-605, gnl|rheMac2|chr14 (106724820-106725011) | |
| 444-605, gnl|rn3|chr8 (57075885-57075697) | |
| 444-605, gnl|tetNig1|chrUn_random (50667313-50667464) | |
| 444-605, gnl|xenTro1|scaffold_812 (290649-290453) | |
| 851-965, gnl|bosTau2|chr15 (5962648-5962534) | |
| 851-965, gnl|canFam2|chr5 (27375821-27375697) | |
| 851-965, gnl|danRer3|chr25 (8912473-8912349) | |
| 851-965, gnl|dasNov1|scaffold_22316 (34402-34280) | |
| 851-965, gnl|echTel1|scaffold_292773 (534-412) | |
| 851-965, gnl|fr1|chrUn (274459034-274458913) | |
| 851-965, gnl|galGal2|chr1 (172303152-172303028) | |
| 851-965, gnl|hg17|chr11 (107518369-107518493) | |
| 851-965, gnl|Hg17|chr11 (107518373-107518487) | |
| 851-965, gnl|loxAfr1|scaffold_8323 (61855-61977) | |
| 851-965, gnl|mm7|chr9 (53566256-53566132) | |
| 851-965, gnl|Mm7|chr9 (53566250-53566136) | |
| 851-965, gnl|monDom2|scaffold_2 (134809901-134809777) | |
| 851-965, gnl|oryCun1|scaffold_191996 (46845-46969) | |
| 851-965, gnl|panTro1|chr9 (109476856-109476980) | |
| 851-965, gnl|rheMac2|chr14 (106728658-106728782) | |
| 851-965, gnl|rn3|chr8 (57069909-57069785) | |
| 851-965, gnl|tetNig1|chrUn_random (50667905-50668029) | |
| 851-965, gnl|xenTro1|scaffold_812 (286651-286529) | |
| 1188-1540, gnl|bosTau2|chr15 (5959170-5958802) | |
| 1188-1540, gnl|Hg17|chr11 (107523206-107523571) | |
| 1188-1540, gnl|Mm7|chr9 (53561349-53561014) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-264, gnl|bosTau2|chr15 (5970404-5970286) | |
| 146-264, gnl|Hg17|chr11 (107509757-107509875) | |
| 146-264, gnl|Mm7|chr9 (53574083-53573965) | |
| 444-605, gnl|bosTau2|chr15 (5966340-5966178) | |
| 444-605, gnl|canFam2|chr5 (27378532-27378348) | |
| 444-605, gnl|danRer3|chr25 (8919109-8918939) | |
| 444-605, gnl|fr1|chrUn (274460081-274459920) | |
| 444-605, gnl|galGal2|chr1 (172305934-172305751) | |
| 444-605, gnl|hg17|chr11 (107514796-107514987) | |
| 444-605, gnl|Hg17|chr11 (107514816-107514979) | |
| 444-605, gnl|loxAfr1|scaffold_8323 (55199-55388) | |
| 444-605, gnl|mm7|chr9 (53570833-53570644) | |
| 444-605, gnl|Mm7|chr9 (53570812-53570650) | |
| 444-605, gnl|monDom2|scaffold_2 (134820265-134820065) | |
| 444-605, gnl|oryCun1|scaffold_112908 (4424-4236) | |
| 444-605, gnl|panTro1|chr9 (109473278-109473469) | |
| 444-605, gnl|rheMac2|chr14 (106724820-106725011) | |
| 444-605, gnl|rn3|chr8 (57075885-57075697) | |
| 444-605, gnl|tetNig1|chrUn_random (50667313-50667464) | |
| 444-605, gnl|xenTro1|scaffold_812 (290649-290453) | |
| 851-965, gnl|bosTau2|chr15 (5962648-5962534) | |
| 851-965, gnl|canFam2|chr5 (27375821-27375697) | |
| 851-965, gnl|danRer3|chr25 (8912473-8912349) | |
| 851-965, gnl|dasNov1|scaffold_22316 (34402-34280) | |
| 851-965, gnl|echTel1|scaffold_292773 (534-412) | |
| 851-965, gnl|fr1|chrUn (274459034-274458913) | |
| 851-965, gnl|galGal2|chr1 (172303152-172303028) | |
| 851-965, gnl|hg17|chr11 (107518369-107518493) | |
| 851-965, gnl|Hg17|chr11 (107518373-107518487) | |
| 851-965, gnl|loxAfr1|scaffold_8323 (61855-61977) | |
| 851-965, gnl|mm7|chr9 (53566256-53566132) | |
| 851-965, gnl|Mm7|chr9 (53566250-53566136) | |
| 851-965, gnl|monDom2|scaffold_2 (134809901-134809777) | |
| 851-965, gnl|oryCun1|scaffold_191996 (46845-46969) | |
| 851-965, gnl|panTro1|chr9 (109476856-109476980) | |
| 851-965, gnl|rheMac2|chr14 (106728658-106728782) | |
| 851-965, gnl|rn3|chr8 (57069909-57069785) | |
| 851-965, gnl|tetNig1|chrUn_random (50667905-50668029) | |
| 851-965, gnl|xenTro1|scaffold_812 (286651-286529) | |
| 1188-1540, gnl|bosTau2|chr15 (5959170-5958802) | |
| 1188-1540, gnl|Hg17|chr11 (107523206-107523571) | |
| 1188-1540, gnl|Mm7|chr9 (53561349-53561014) |
| Expressed library(ies): 64 entry(ies) | More info |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
| hea (1.84049) | |
| tbr (1.69596) | |
| sto (1.25877) | |
| cmu (1.11836) | |
| ssp (1.08416) | |
| isp (1.05263) | |
| vin (0.997672) | |
| ldo (0.970026) | |
| ski (0.880411) | |
| cbe (0.717703) | |
| sin (0.69979) | |
| hlv (0.696282) | |
| mgp (0.692042) | |
| ste (0.676041) | |
| mas (0.630915) | |
| csk (0.562984) | |
| sag (0.548145) | |
| rec (0.519211) | |
| kid (0.518941) | |
| cut (0.509771) | |
| pan (0.471921) | |
| lun (0.451467) | |
| fat (0.442282) | |
| liv (0.438853) | |
| lin (0.436808) | |
| lyg (0.399308) | |
| eje (0.395335) | |
| aor (0.390549) | |
| col (0.390016) | |
| ova (0.387397) | |
| elu (0.385356) | |
| bla (0.373042) | |
| pgl (0.35545) | |
| ebs (0.354904) | |
| eye (0.341006) | |
| cki (0.330469) | |
| nco (0.323468) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| cte (0.29274) | |
| cst (0.280073) | |
| che (0.272628) | |
| sug (0.254582) | |
| tra (0.246184) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| spc (0.226732) | |
| nms (0.213858) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| mga (0.160205) | |
| fco (0.157208) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| cbl (0.114797) |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (1.84049) | |
| tbr (1.69596) | |
| sto (1.25877) | |
| cmu (1.11836) | |
| ssp (1.08416) | |
| isp (1.05263) | |
| vin (0.997672) | |
| ldo (0.970026) | |
| ski (0.880411) | |
| cbe (0.717703) | |
| sin (0.69979) | |
| hlv (0.696282) | |
| mgp (0.692042) | |
| ste (0.676041) | |
| mas (0.630915) | |
| csk (0.562984) | |
| sag (0.548145) | |
| rec (0.519211) | |
| kid (0.518941) | |
| cut (0.509771) | |
| pan (0.471921) | |
| lun (0.451467) | |
| fat (0.442282) | |
| liv (0.438853) | |
| lin (0.436808) | |
| lyg (0.399308) | |
| eje (0.395335) | |
| aor (0.390549) | |
| col (0.390016) | |
| ova (0.387397) | |
| elu (0.385356) | |
| bla (0.373042) | |
| pgl (0.35545) | |
| ebs (0.354904) | |
| eye (0.341006) | |
| cki (0.330469) | |
| nco (0.323468) | |
| sme (0.305437) | |
| bfe (0.299715) | |
| cte (0.29274) | |
| cst (0.280073) | |
| che (0.272628) | |
| sug (0.254582) | |
| tra (0.246184) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| spc (0.226732) | |
| nms (0.213858) | |
| cty (0.20816) | |
| tes (0.207814) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| mga (0.160205) | |
| fco (0.157208) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| cbl (0.114797) |