Ss1.1-Thy1-THY010060H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGACAGCGAAGGGGTCGCCGCGGCTCCCGCTCTACGGGTCGGCGGCTCCCTCGGGCGCT GCTGGGCAGACGTGGAGTCCGCAGGGCGGGTGACCGCGGTCCCCAGCTGGCACGCTCGGC TGCGGGTAGAGTCGACATGAGTGCTGCGGGACTGCTGGCTCCAGCCCCGGCTGGAGCGCC GCCGGCTCCGGAGTACTACCCTGAGGAGGACGAAGAGCTGGAGAGCGCCGAGGACGACGA GCGCAGCTGCCGGGGCCGCGAGTCCGACGAAGACACTGAGGATGCTAGTGAAACTGACCT GGCAAAGCATGATGAGGAAGACTATGTAGAAATGAAGGAACAGATGTATCAGGATAAGTT GGCTTCTCTCAAGAGACAGTTGCAACAACTGCAGGAAGGTACATTACAGGAATATCAGAA GAGAATGAAGAAGCTCGATCAGCAGTACAAGGAGAGGATACGGAATGCAGAGCTCTTCCT CCAGCTGGAAACTGAACAAGTGGAGAGAAATTACATCAAAGAAAAGAAGGCAGCAGTGAA AGAATTTGAAGACAAGAAGGTTGAGCTGAAGGAGAACCTGATCGCTGAGCTAGAAGAAAA GAAGAAGATGATCGAAAATGAAAAGCTAACTATGGAACTGACTGGAGATTCAATGGAGGT GAAACCCATCATGACCAGAAAGTTGCGGAGGCGACCGAATGATCCTGTCCCCATCCCAGA CAAGAGGAGAAAGCCTGCTCCAGCCCAGCTAAACTATTTGTTAACAGATGAACAGATCAT GGAAGATCTGAGAACGTTAAATAAGCTGAAGTCACCCAAGAGACCAGCATCCCCATCCTC TCCTGAACACTTACCTGCCACACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGACAGCGAAGGGGTCGCCGCGGCTCCCGCTCTACGGGTCGGCGGCTCCCTCGGGCGCT GCTGGGCAGACGTGGAGTCCGCAGGGCGGGTGACCGCGGTCCCCAGCTGGCACGCTCGGC TGCGGGTAGAGTCGACATGAGTGCTGCGGGACTGCTGGCTCCAGCCCCGGCTGGAGCGCC GCCGGCTCCGGAGTACTACCCTGAGGAGGACGAAGAGCTGGAGAGCGCCGAGGACGACGA GCGCAGCTGCCGGGGCCGCGAGTCCGACGAAGACACTGAGGATGCTAGTGAAACTGACCT GGCAAAGCATGATGAGGAAGACTATGTAGAAATGAAGGAACAGATGTATCAGGATAAGTT GGCTTCTCTCAAGAGACAGTTGCAACAACTGCAGGAAGGTACATTACAGGAATATCAGAA GAGAATGAAGAAGCTCGATCAGCAGTACAAGGAGAGGATACGGAATGCAGAGCTCTTCCT CCAGCTGGAAACTGAACAAGTGGAGAGAAATTACATCAAAGAAAAGAAGGCAGCAGTGAA AGAATTTGAAGACAAGAAGGTTGAGCTGAAGGAGAACCTGATCGCTGAGCTAGAAGAAAA GAAGAAGATGATCGAAAATGAAAAGCTAACTATGGAACTGACTGGAGATTCAATGGAGGT GAAACCCATCATGACCAGAAAGTTGCGGAGGCGACCGAATGATCCTGTCCCCATCCCAGA CAAGAGGAGAAAGCCTGCTCCAGCCCAGCTAAACTATTTGTTAACAGATGAACAGATCAT GGAAGATCTGAGAACGTTAAATAAGCTGAAGTCACCCAAGAGACCAGCATCCCCATCCTC TCCTGAACACTTACCTGCCACACC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-272, gnl|bosTau2|chr17 (31877167-31877444) | |
| 1-272, gnl|Hg17|chr12 (117277081-117277358) | |
| 1-272, gnl|Mm7|chr5 (116345641-116345371) | |
| 491-647, gnl|bosTau2|chr17 (31888685-31888841) | |
| 491-647, gnl|canFam2|chr26 (17750879-17751080) | |
| 491-647, gnl|canFam2|chr26 (17750906-17751062) | |
| 491-647, gnl|danRer3|chrNA (199967143-199967311) | |
| 491-647, gnl|danRer3|chrNA (199967143-199967299) | |
| 491-647, gnl|dasNov1|scaffold_47478 (8653-8849) | |
| 491-647, gnl|dasNov1|scaffold_47478 (8675-8831) | |
| 491-647, gnl|fr1|chrUn (196126637-196126447) | |
| 491-647, gnl|fr1|chrUn (196126617-196126461) | |
| 491-647, gnl|galGal2|chr15 (9734521-9734334) | |
| 491-647, gnl|hg17|chr12 (117291626-117291824) | |
| 491-647, gnl|Hg17|chr12 (117291651-117291807) | |
| 491-647, gnl|hg17|chr5 (177331261-177331419) | |
| 491-647, gnl|loxAfr1|scaffold_132 (4434-4236) | |
| 491-647, gnl|loxAfr1|scaffold_132 (4410-4254) | |
| 491-647, gnl|mm7|chr5 (116335027-116334844) | |
| 491-647, gnl|mm7|chr5 (116335011-116334855) | |
| 491-647, gnl|Mm7|chr5 (116335010-116334854) | |
| 491-647, gnl|monDom2|scaffold_101 (2310365-2310155) | |
| 491-647, gnl|monDom2|scaffold_101 (2310334-2310178) | |
| 491-647, gnl|oryCun1|scaffold_213111 (108923-108724) | |
| 491-647, gnl|oryCun1|scaffold_213111 (108896-108740) | |
| 491-647, gnl|panTro1|chr10 (120282538-120282736) | |
| 491-647, gnl|panTro1|chr10 (120282564-120282718) | |
| 491-647, gnl|rheMac2|chr11 (119350344-119350542) | |
| 491-647, gnl|rheMac2|chr15 (81192693-81192536) | |
| 491-647, gnl|rn3|chr12 (40541135-40541328) | |
| 491-647, gnl|rn3|chr12 (40541156-40541310) | |
| 491-647, gnl|tetNig1|chr12 (4402874-4402691) | |
| 491-647, gnl|tetNig1|chr12 (4402860-4402704) | |
| 491-647, gnl|xenTro1|scaffold_2 (727967-728173) | |
| 491-647, gnl|xenTro1|scaffold_2 (727999-728157) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-272, gnl|bosTau2|chr17 (31877167-31877444) | |
| 1-272, gnl|Hg17|chr12 (117277081-117277358) | |
| 1-272, gnl|Mm7|chr5 (116345641-116345371) | |
| 491-647, gnl|bosTau2|chr17 (31888685-31888841) | |
| 491-647, gnl|canFam2|chr26 (17750879-17751080) | |
| 491-647, gnl|canFam2|chr26 (17750906-17751062) | |
| 491-647, gnl|danRer3|chrNA (199967143-199967311) | |
| 491-647, gnl|danRer3|chrNA (199967143-199967299) | |
| 491-647, gnl|dasNov1|scaffold_47478 (8653-8849) | |
| 491-647, gnl|dasNov1|scaffold_47478 (8675-8831) | |
| 491-647, gnl|fr1|chrUn (196126637-196126447) | |
| 491-647, gnl|fr1|chrUn (196126617-196126461) | |
| 491-647, gnl|galGal2|chr15 (9734521-9734334) | |
| 491-647, gnl|hg17|chr12 (117291626-117291824) | |
| 491-647, gnl|Hg17|chr12 (117291651-117291807) | |
| 491-647, gnl|hg17|chr5 (177331261-177331419) | |
| 491-647, gnl|loxAfr1|scaffold_132 (4434-4236) | |
| 491-647, gnl|loxAfr1|scaffold_132 (4410-4254) | |
| 491-647, gnl|mm7|chr5 (116335027-116334844) | |
| 491-647, gnl|mm7|chr5 (116335011-116334855) | |
| 491-647, gnl|Mm7|chr5 (116335010-116334854) | |
| 491-647, gnl|monDom2|scaffold_101 (2310365-2310155) | |
| 491-647, gnl|monDom2|scaffold_101 (2310334-2310178) | |
| 491-647, gnl|oryCun1|scaffold_213111 (108923-108724) | |
| 491-647, gnl|oryCun1|scaffold_213111 (108896-108740) | |
| 491-647, gnl|panTro1|chr10 (120282538-120282736) | |
| 491-647, gnl|panTro1|chr10 (120282564-120282718) | |
| 491-647, gnl|rheMac2|chr11 (119350344-119350542) | |
| 491-647, gnl|rheMac2|chr15 (81192693-81192536) | |
| 491-647, gnl|rn3|chr12 (40541135-40541328) | |
| 491-647, gnl|rn3|chr12 (40541156-40541310) | |
| 491-647, gnl|tetNig1|chr12 (4402874-4402691) | |
| 491-647, gnl|tetNig1|chr12 (4402860-4402704) | |
| 491-647, gnl|xenTro1|scaffold_2 (727967-728173) | |
| 491-647, gnl|xenTro1|scaffold_2 (727999-728157) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| eep (0.122564) | |
| cty (0.10408) |