Non-Coding RNA Search

Ss1.1-Thy1-THY010061A03.5

Sequence:


               
               TCTGTGTTCCGGCCTTTCGCCACCAGCACGGGGCTGGGAACTGAGGCCTAGAAACGCAAG
TAACAGACGTGGAGTTGCTGAGCGAAGCTGTAGGACGCAGCAACCCTCCAGCCCAGGAGT
TTGTCCAAGGGTCGGGCCTGGAGCCGAAGCTTGTAGCAGCCCTACAAGTCTGAGGGGGCG
GGCGTGGTCGCGTGGGGTGGGCCGAGGTTCCCCGAGGTTCCCCGGCAAGTTTCAGGAGGG
CGGGGCCAGGAGCTGGGCTGTCCCGGGGCGGGGCGGGGCGTCCTGGGGGGCGGGGCCGAG
CGCCTGTGTTTGTTGCGCCGTGTCAGTTACATTGTAACAAAAGTGGTGCAGCCGCTCCTC
CGGCCAGCACCGTAGGCCAGCCCGCCGCCAGCTGTCGCGGACATGGAACCCGTGGCCAGC
AATATCCAAGTTCTGCTGCAGGCGGCCGAGTTCCTGGAGCGCCGCGAGAGAGAGGCGGAG
CATGGCTATGCGTCCCTGTTTCCGCACCGAAGTCCTGGCCCGGTCCACAGGAGGAGGCGG
CGGTCCCCCCAAGATCCTGGCGCGCTGGACAGTGGGCGGTCTGTGCATAACGAGTTGGAA
AAGCGCAGGAGGGCCCAGCTGAAGCGGTGCCTGGAGCAGCTGAAGCAGCAGATGCCCCTG
GGGGCTGACTGTGCCCGATACACCACACTGAGCCTTCTGCGCAGGGCCAGGATGCACATC
CAGAAACTGGAGGAGCAGGAGCAGCGGGCCCGGCGGCTCAAGGAGAAGCTTCGAAGTAAG
CAGCAGAGCCTGCGGCAGCAGCTGGAGCAGCTCAGGGGGCTTGCGGGGCCTGGTGAGCGT
GAGCGGCTGCGGGCAGACAGCCTGGACTCCTCAGGCCTCTCCTCCGAGCGTTCTGACTCA
GACCAAGAGGAGCTGGAGGTGGATGTGGAGAGCCTGGTGTTCGGGGGCGAGGCTGAGCTG
CTACGGGGCTTCAGCGCCGGCCAGGAGCACAGCTATTCACACGGTGGTGGCGTCTGGCTA
TGACCTTCGTTGCCGGAGGGGCCTCTATGCTCAGACCACCCTTGGCTCTGCCCAACTGGA
GTCCTCGCCGAGCCTCCAGGGCTGCTGAGAGTCGCCTCCTGTTGGAATGGACTAAATGGA
CCTTGTGTGGAAACAGGTGCTCCCCCTACCCTGCTGCTGGCTGCCGGCAGCCCCTCCTAG
GACAGAGAGCCCTGCGGGGCAGGTGGCTTGGGCCCAGGCTGCCCTTCCAGGCATTTTTAG
TAGCACTTGGCTCTGCTGTCCATGGGGGCAGGGAGCCTTTTGGGCCCTCACGTTCCTTCC
TAGACAAGGGCCCGCCCCTGGCCTTTGCCCCACATGTACTGTTCAGTGTTTTCATTAAAA
GCCCCTTTCTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTGTTCCGGCCTTTCGCCACCAGCACGGGGCTGGGAACTGAGGCCTAGAAACGCAAG
TAACAGACGTGGAGTTGCTGAGCGAAGCTGTAGGACGCAGCAACCCTCCAGCCCAGGAGT
TTGTCCAAGGGTCGGGCCTGGAGCCGAAGCTTGTAGCAGCCCTACAAGTCTGAGGGGGCG
GGCGTGGTCGCGTGGGGTGGGCCGAGGTTCCCCGAGGTTCCCCGGCAAGTTTCAGGAGGG
CGGGGCCAGGAGCTGGGCTGTCCCGGGGCGGGGCGGGGCGTCCTGGGGGGCGGGGCCGAG
CGCCTGTGTTTGTTGCGCCGTGTCAGTTACATTGTAACAAAAGTGGTGCAGCCGCTCCTC
CGGCCAGCACCGTAGGCCAGCCCGCCGCCAGCTGTCGCGGACATGGAACCCGTGGCCAGC
AATATCCAAGTTCTGCTGCAGGCGGCCGAGTTCCTGGAGCGCCGCGAGAGAGAGGCGGAG
CATGGCTATGCGTCCCTGTTTCCGCACCGAAGTCCTGGCCCGGTCCACAGGAGGAGGCGG
CGGTCCCCCCAAGATCCTGGCGCGCTGGACAGTGGGCGGTCTGTGCATAACGAGTTGGAA
AAGCGCAGGAGGGCCCAGCTGAAGCGGTGCCTGGAGCAGCTGAAGCAGCAGATGCCCCTG
GGGGCTGACTGTGCCCGATACACCACACTGAGCCTTCTGCGCAGGGCCAGGATGCACATC
CAGAAACTGGAGGAGCAGGAGCAGCGGGCCCGGCGGCTCAAGGAGAAGCTTCGAAGTAAG
CAGCAGAGCCTGCGGCAGCAGCTGGAGCAGCTCAGGGGGCTTGCGGGGCCTGGTGAGCGT
GAGCGGCTGCGGGCAGACAGCCTGGACTCCTCAGGCCTCTCCTCCGAGCGTTCTGACTCA
GACCAAGAGGAGCTGGAGGTGGATGTGGAGAGCCTGGTGTTCGGGGGCGAGGCTGAGCTG
CTACGGGGCTTCAGCGCCGGCCAGGAGCACAGCTATTCACACGGTGGTGGCGTCTGGCTA
TGACCTTCGTTGCCGGAGGGGCCTCTATGCTCAGACCACCCTTGGCTCTGCCCAACTGGA
GTCCTCGCCGAGCCTCCAGGGCTGCTGAGAGTCGCCTCCTGTTGGAATGGACTAAATGGA
CCTTGTGTGGAAACAGGTGCTCCCCCTACCCTGCTGCTGGCTGCCGGCAGCCCCTCCTAG
GACAGAGAGCCCTGCGGGGCAGGTGGCTTGGGCCCAGGCTGCCCTTCCAGGCATTTTTAG
TAGCACTTGGCTCTGCTGTCCATGGGGGCAGGGAGCCTTTTGGGCCCTCACGTTCCTTCC
TAGACAAGGGCCCGCCCCTGGCCTTTGCCCCACATGTACTGTTCAGTGTTTTCATTAAAA
GCCCCTTTCTTAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BW11_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BW11_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1207-1393, - strand, RNAz p=0.999558

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1207-1393, - strand, RNAz p=0.999558

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-479, gnl|bosTau2|chr7 (21510147-21509680)
               

               
               1-479, gnl|Hg17|chr5 (176671830-176671361)
               


               
               605-723, gnl|bosTau2|chr7 (21508484-21508366)
               

               
               605-723, gnl|Hg17|chr5 (176670151-176670033)
               

               
               605-723, gnl|Mm7|chr13 (54408695-54408577)
               


               
               906-1393, gnl|bosTau2|chr7 (21505975-21505487)
               

               
               906-1393, gnl|Hg17|chr5 (176667312-176666817)
               

               
               906-1393, gnl|Mm7|chr13 (54406122-54405701)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr7 (21510147-21509680)
               

               
               1-479, gnl|Hg17|chr5 (176671830-176671361)
               


               
               605-723, gnl|bosTau2|chr7 (21508484-21508366)
               

               
               605-723, gnl|Hg17|chr5 (176670151-176670033)
               

               
               605-723, gnl|Mm7|chr13 (54408695-54408577)
               


               
               906-1393, gnl|bosTau2|chr7 (21505975-21505487)
               

               
               906-1393, gnl|Hg17|chr5 (176667312-176666817)
               

               
               906-1393, gnl|Mm7|chr13 (54406122-54405701)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               med (0.232504)
               

               
               fty (0.17584)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

	1-479, gnl\|bosTau2\|chr7 (21510147-21509680)
	1-479, gnl\|Hg17\|chr5 (176671830-176671361)

	605-723, gnl\|bosTau2\|chr7 (21508484-21508366)
	605-723, gnl\|Hg17\|chr5 (176670151-176670033)
	605-723, gnl\|Mm7\|chr13 (54408695-54408577)

	906-1393, gnl\|bosTau2\|chr7 (21505975-21505487)
	906-1393, gnl\|Hg17\|chr5 (176667312-176666817)
	906-1393, gnl\|Mm7\|chr13 (54406122-54405701)