Ss1.1-Thy1-THY010061A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGCCAGCGCCCACCTGGTTCTCTAGTAGGTGCTTTCCAGCCTGCTCCGGGACTGGAGT ACCCCCGCGAGTCCCTGCCGGCCACGCCACTTCCTGCCCCCGGCCTCAGCCTTCTCCTGT TCTGACCAGTCCTCGACTTCCATCTCCCACCCTTAGCGGGTATCAGTTCCTCGCCCTGCT GTCCTTCGCTCCCCTCCCCGCCAAGGGTCCCTGTCGCTGAGCCCCGGCCCCATGGCGCTG CAGGCGTTGCAAAGCTCCGGGGTGACCTTCCGCAAGATCCTGTCTCACTTCCCCGAAGAG CTGAGCCTGGCTTTCGCCTACGGTTCTGGAGTGTACCGCCAGGCGGGGCCCAGCTCAGAC CAGAAGAAGGCCATGCTGGACTTTGTGTTCACAGTCGATGACCCTGTAGAATGGCATTCC AAGAACCTGAAGAAAAACTGGAACCATTACTCTTTCCTAAAAATTTTTGGGCCCAGGATT ATCAGCACTGTCCAGAATAACTACGGCGCCGGAGTTTACTATAATCCGTTGATCATGTGT GATGGTAGGCTTATCAAGTATGGGGTTATTAGCACTAGTACTTTGATTGAAGACCTCCTC AACTGGAATAACTTATACATTGCTGGAAGACTCCAGAAACCGGTGAAAATCGTAGCAATG AATGAGAATGTGGCTCTTAGGTCAGCCCTTGATAAAAATCTGAAAAGTGCTGTGACTGCT GCTTTCCTCATGCTCCCCGAAAGCTTTTCTGAAGAAGACCTGTTTTTGGAGATTGCTGGT CTCTCCTACTCAGGTGACTTTCGCATGGTGGTTGGAGAGGATAGGATGAAAGTGTTGAAT ATTGTGAAGCCCAACATAGCCCACTTTCGTGAACTCTATGGCAGCATTCTACAGGAGAAC CCCCAAGTGGTGTATAAAATCCAGCAAGGCAGCCTGGAGATAGATAAAAGCCCAGAAGGA CAATTCACTCAGCTACTGACATTGCCTAAAACCTTACAGCAGCAAATAAATCATATTATG GACCTTCCTGGAAAGAACAGAGATGTGGAAGAAACCTTATTACAAGTTGCTCATGATCCC GACTGTGGAGACGTGGTGCGACTAGCGCTCTCAGCAATCGTGAGACCTTCCAGCATGAGA CAGAGCACGAAAGGCATTTTCACTGCTGGCCTGAAGAAGTCAGTGATTTATAGTTCACTA AAACTACATAAAATGTGGAAAGGATGGCTGAGAAAAACAATCTGATTTTGCTCACTTTTA TCTGTCTTATGTGTAGATGAATAAAATGATCCTTTTATCTGTCTTATGTGTAGATGAATA AAATGATCCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGCCAGCGCCCACCTGGTTCTCTAGTAGGTGCTTTCCAGCCTGCTCCGGGACTGGAGT ACCCCCGCGAGTCCCTGCCGGCCACGCCACTTCCTGCCCCCGGCCTCAGCCTTCTCCTGT TCTGACCAGTCCTCGACTTCCATCTCCCACCCTTAGCGGGTATCAGTTCCTCGCCCTGCT GTCCTTCGCTCCCCTCCCCGCCAAGGGTCCCTGTCGCTGAGCCCCGGCCCCATGGCGCTG CAGGCGTTGCAAAGCTCCGGGGTGACCTTCCGCAAGATCCTGTCTCACTTCCCCGAAGAG CTGAGCCTGGCTTTCGCCTACGGTTCTGGAGTGTACCGCCAGGCGGGGCCCAGCTCAGAC CAGAAGAAGGCCATGCTGGACTTTGTGTTCACAGTCGATGACCCTGTAGAATGGCATTCC AAGAACCTGAAGAAAAACTGGAACCATTACTCTTTCCTAAAAATTTTTGGGCCCAGGATT ATCAGCACTGTCCAGAATAACTACGGCGCCGGAGTTTACTATAATCCGTTGATCATGTGT GATGGTAGGCTTATCAAGTATGGGGTTATTAGCACTAGTACTTTGATTGAAGACCTCCTC AACTGGAATAACTTATACATTGCTGGAAGACTCCAGAAACCGGTGAAAATCGTAGCAATG AATGAGAATGTGGCTCTTAGGTCAGCCCTTGATAAAAATCTGAAAAGTGCTGTGACTGCT GCTTTCCTCATGCTCCCCGAAAGCTTTTCTGAAGAAGACCTGTTTTTGGAGATTGCTGGT CTCTCCTACTCAGGTGACTTTCGCATGGTGGTTGGAGAGGATAGGATGAAAGTGTTGAAT ATTGTGAAGCCCAACATAGCCCACTTTCGTGAACTCTATGGCAGCATTCTACAGGAGAAC CCCCAAGTGGTGTATAAAATCCAGCAAGGCAGCCTGGAGATAGATAAAAGCCCAGAAGGA CAATTCACTCAGCTACTGACATTGCCTAAAACCTTACAGCAGCAAATAAATCATATTATG GACCTTCCTGGAAAGAACAGAGATGTGGAAGAAACCTTATTACAAGTTGCTCATGATCCC GACTGTGGAGACGTGGTGCGACTAGCGCTCTCAGCAATCGTGAGACCTTCCAGCATGAGA CAGAGCACGAAAGGCATTTTCACTGCTGGCCTGAAGAAGTCAGTGATTTATAGTTCACTA AAACTACATAAAATGTGGAAAGGATGGCTGAGAAAAACAATCTGATTTTGCTCACTTTTA TCTGTCTTATGTGTAGATGAATAAAATGATCCTTTTATCTGTCTTATGTGTAGATGAATA AAATGATCCTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 938-1105, gnl|bosTau2|chr22 (45392788-45392621) | |
| 938-1105, gnl|canFam2|chr20 (9696028-9695834) | |
| 938-1105, gnl|danRer3|chrNA (49519267-49519472) | |
| 938-1105, gnl|dasNov1|scaffold_98592 (5275-5085) | |
| 938-1105, gnl|echTel1|scaffold_284604 (41494-41301) | |
| 938-1105, gnl|fr1|chrUn (31603534-31603341) | |
| 938-1105, gnl|galGal2|chr12 (4650365-4650563) | |
| 938-1105, gnl|hg17|chr3 (11825982-11826175) | |
| 938-1105, gnl|Hg17|chr3 (11826158-11825991) | |
| 938-1105, gnl|loxAfr1|scaffold_10092 (39879-39678) | |
| 938-1105, gnl|mm7|chr6 (115037763-115037957) | |
| 938-1105, gnl|Mm7|chr6 (115037939-115037772) | |
| 938-1105, gnl|monDom2|scaffold_5 (39174784-39174976) | |
| 938-1105, gnl|oryCun1|scaffold_205869 (122207-122009) | |
| 938-1105, gnl|panTro1|chr2 (12244099-12244292) | |
| 938-1105, gnl|rheMac2|chr2 (49236079-49235888) | |
| 938-1105, gnl|rn3|chr4 (151391483-151391681) | |
| 938-1105, gnl|tetNig1|chr11 (3755807-3755992) | |
| 938-1105, gnl|xenTro1|scaffold_678 (37039-37228) | |
| 1157-1296, gnl|bosTau2|chr22 (45381523-45381382) | |
| 1157-1296, gnl|Hg17|chr3 (11807068-11806924) | |
| 1157-1296, gnl|Mm7|chr6 (115030146-115030003) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 938-1105, gnl|bosTau2|chr22 (45392788-45392621) | |
| 938-1105, gnl|canFam2|chr20 (9696028-9695834) | |
| 938-1105, gnl|danRer3|chrNA (49519267-49519472) | |
| 938-1105, gnl|dasNov1|scaffold_98592 (5275-5085) | |
| 938-1105, gnl|echTel1|scaffold_284604 (41494-41301) | |
| 938-1105, gnl|fr1|chrUn (31603534-31603341) | |
| 938-1105, gnl|galGal2|chr12 (4650365-4650563) | |
| 938-1105, gnl|hg17|chr3 (11825982-11826175) | |
| 938-1105, gnl|Hg17|chr3 (11826158-11825991) | |
| 938-1105, gnl|loxAfr1|scaffold_10092 (39879-39678) | |
| 938-1105, gnl|mm7|chr6 (115037763-115037957) | |
| 938-1105, gnl|Mm7|chr6 (115037939-115037772) | |
| 938-1105, gnl|monDom2|scaffold_5 (39174784-39174976) | |
| 938-1105, gnl|oryCun1|scaffold_205869 (122207-122009) | |
| 938-1105, gnl|panTro1|chr2 (12244099-12244292) | |
| 938-1105, gnl|rheMac2|chr2 (49236079-49235888) | |
| 938-1105, gnl|rn3|chr4 (151391483-151391681) | |
| 938-1105, gnl|tetNig1|chr11 (3755807-3755992) | |
| 938-1105, gnl|xenTro1|scaffold_678 (37039-37228) | |
| 1157-1296, gnl|bosTau2|chr22 (45381523-45381382) | |
| 1157-1296, gnl|Hg17|chr3 (11807068-11806924) | |
| 1157-1296, gnl|Mm7|chr6 (115030146-115030003) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| bla (0.248694) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| ski (0.146735) | |
| ute (0.132784) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.248694) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| ski (0.146735) | |
| ute (0.132784) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ldo (0.0970026) |