Ss1.1-Thy1-THY010061C09.5
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AGAGGCAGGTGGAGACAAGTTAAATGCTTGGCGAGCGGAAGAGACAAGAGACCACGGAGA
GACTGCTGTGATGGGGGCGCCTTTGAAGAGCGCAGGTCCTCTGACAGAGTTTGCCCTTTA
ATACTCTCCCAGCACCCAGCGCACGGAAAAGGGGTGGGGGCAGTGGCAGTGACAGTGACT
GCATGAGTGAGAAACAGCCACAGTAGCGCTTCAACGGCATCAGAGGTCGGCCTGCCACCT
GAGGGGGGCAACTCCCAGAAGACCTGCCTGGGAGGTGCAAAGAAGAGACACCAGCACCCA
GCTGGGGAGGTGCCAGCTCCCCCAAGGCCACAGCTGGGGCACAGGAAGAACTTCCTGGGC
AGGGGCCATGGCCCGGTCACCTCTCTGCTGGCTGTGGGTTCTGGGTACCCTGGCAGGGCT
CTCCGCTACCCCAGCCCCCCAGAGCTGTCCAGAGAAGCACTACTGGGCTCGGGGCGAACT
GTGCTGCCAGATGTGCCAGCCAGGAACGTTCCTGGTGAAGGACTGTGACCAGCACGGAAA
GGCTGCTCGCTGTGATCCGTGTAAACAGGGGGTGTCCTTCTCACCAGACTACCACAGCCG
GCCCCACTGTGAGAGCTGCCGGCACTGTAACTCTGGTCTTTTCGTTCAAAACTGCACCCT
CACTGCCAACGCCAAGTGTGCCTGCCCTGAGGGCTGGCAGTGCAGGGACAAGGAGTGTAC
AGAGTGTGATGGTCCAGCCCAGACCCCAGGCCCACACCCACAACCCTCCCACTCACCTTA
TGCTGAAGCAATACCAGAGGCCAGGACCAGCCGGTACACTCAGACTCTGGCTGACGTCGG
GCAGGTTCCTGTCCCAACTATCTCCACCTACTTGTCTTCCCAAAGGTGCAGCTCGGAGTG
CATCCGCATCCTTGTGGTCCTCTCTGGAGTGTTTCTTGCTTTCACCGTAGTCGGAGCCCT
GTTCCTCTATCAACAAAGAAAATATGGATTAAACACCGGAGAATGTCCAGTGGCGCCAGC
GGAGCCTTGTCCTTACAGCTACCCCAGGGAGGAGGAGGGCAGCGCCATCCCCATTCAGGA
AGATTACCGAAAACCAGAGCTCGCTTCCTACCTCTGAGCCAGCGCTCCGCGGAGGAGAAG
CCATCACTGCCATCAAGCCCGAGCTTCCATCCCACCTCACCCGACATCCAGGGGGATCGA
GAGCTGGCACCCCCAATTTCAGCACTACCCCTTCATCAGAACCCTTTCCCGTGTGCAGAC
TTGGGAAACTGGCCAATGTGCCTTTTCGGGACTGGTGTGTCGAGGACACAGGGGACGAGG
TGGAGGGGTGGGGAAGCAAGAGCCCGGGTGTGTCCCGGCCATCCAGCTTGCACCCTGTGC
TGCAAGAGGGCTGGGGCTCCAGGTGGAAAACACACCTTGGCCTACGGAAGGCCAGCGCGC
TATACCGCTGACCTAGAAACAGCGAAATAAAGTGACAGACGGCAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AGAGGCAGGTGGAGACAAGTTAAATGCTTGGCGAGCGGAAGAGACAAGAGACCACGGAGA
GACTGCTGTGATGGGGGCGCCTTTGAAGAGCGCAGGTCCTCTGACAGAGTTTGCCCTTTA
ATACTCTCCCAGCACCCAGCGCACGGAAAAGGGGTGGGGGCAGTGGCAGTGACAGTGACT
GCATGAGTGAGAAACAGCCACAGTAGCGCTTCAACGGCATCAGAGGTCGGCCTGCCACCT
GAGGGGGGCAACTCCCAGAAGACCTGCCTGGGAGGTGCAAAGAAGAGACACCAGCACCCA
GCTGGGGAGGTGCCAGCTCCCCCAAGGCCACAGCTGGGGCACAGGAAGAACTTCCTGGGC
AGGGGCCATGGCCCGGTCACCTCTCTGCTGGCTGTGGGTTCTGGGTACCCTGGCAGGGCT
CTCCGCTACCCCAGCCCCCCAGAGCTGTCCAGAGAAGCACTACTGGGCTCGGGGCGAACT
GTGCTGCCAGATGTGCCAGCCAGGAACGTTCCTGGTGAAGGACTGTGACCAGCACGGAAA
GGCTGCTCGCTGTGATCCGTGTAAACAGGGGGTGTCCTTCTCACCAGACTACCACAGCCG
GCCCCACTGTGAGAGCTGCCGGCACTGTAACTCTGGTCTTTTCGTTCAAAACTGCACCCT
CACTGCCAACGCCAAGTGTGCCTGCCCTGAGGGCTGGCAGTGCAGGGACAAGGAGTGTAC
AGAGTGTGATGGTCCAGCCCAGACCCCAGGCCCACACCCACAACCCTCCCACTCACCTTA
TGCTGAAGCAATACCAGAGGCCAGGACCAGCCGGTACACTCAGACTCTGGCTGACGTCGG
GCAGGTTCCTGTCCCAACTATCTCCACCTACTTGTCTTCCCAAAGGTGCAGCTCGGAGTG
CATCCGCATCCTTGTGGTCCTCTCTGGAGTGTTTCTTGCTTTCACCGTAGTCGGAGCCCT
GTTCCTCTATCAACAAAGAAAATATGGATTAAACACCGGAGAATGTCCAGTGGCGCCAGC
GGAGCCTTGTCCTTACAGCTACCCCAGGGAGGAGGAGGGCAGCGCCATCCCCATTCAGGA
AGATTACCGAAAACCAGAGCTCGCTTCCTACCTCTGAGCCAGCGCTCCGCGGAGGAGAAG
CCATCACTGCCATCAAGCCCGAGCTTCCATCCCACCTCACCCGACATCCAGGGGGATCGA
GAGCTGGCACCCCCAATTTCAGCACTACCCCTTCATCAGAACCCTTTCCCGTGTGCAGAC
TTGGGAAACTGGCCAATGTGCCTTTTCGGGACTGGTGTGTCGAGGACACAGGGGACGAGG
TGGAGGGGTGGGGAAGCAAGAGCCCGGGTGTGTCCCGGCCATCCAGCTTGCACCCTGTGC
TGCAAGAGGGCTGGGGCTCCAGGTGGAAAACACACCTTGGCCTACGGAAGGCCAGCGCGC
TATACCGCTGACCTAGAAACAGCGAAATAAAGTGACAGACGGCAAAAA
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gi|61866412|ref|XP_590049.1| |
Protein identifier
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gi|61866412|ref|XP_590049.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
36-325, gnl|bosTau2|chr5 (60699362-60699092) |
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36-325, gnl|Hg17|chr12 (6424205-6424468) |
| |
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331-504, gnl|bosTau2|chr5 (60699059-60698883) |
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331-504, gnl|Hg17|chr12 (6424486-6424659) |
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331-504, gnl|Mm7|chr6 (125263233-125263059) |
| |
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635-788, gnl|bosTau2|chr5 (60696013-60695860) |
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635-788, gnl|canFam2|chr27 (41564307-41564071) |
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635-788, gnl|hg17|chr12 (6429542-6429766) |
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635-788, gnl|Hg17|chr12 (6429599-6429779) |
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635-788, gnl|loxAfr1|scaffold_13632 (19246-19470) |
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635-788, gnl|mm7|chr6 (125261059-125260833) |
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635-788, gnl|Mm7|chr6 (125260998-125260818) |
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635-788, gnl|monDom2|scaffold_31 (14843911-14844164) |
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635-788, gnl|rheMac2|chr11 (6604033-6604258) |
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635-788, gnl|rn3|chr4 (161598970-161598743) |
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993-1270, gnl|bosTau2|chr5 (60694576-60694301) |
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993-1270, gnl|Hg17|chr12 (6430695-6430949) |
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993-1270, gnl|Mm7|chr6 (125259742-125259501) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
36-325, gnl|bosTau2|chr5 (60699362-60699092) |
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36-325, gnl|Hg17|chr12 (6424205-6424468) |
| |
|
331-504, gnl|bosTau2|chr5 (60699059-60698883) |
|
331-504, gnl|Hg17|chr12 (6424486-6424659) |
|
331-504, gnl|Mm7|chr6 (125263233-125263059) |
| |
|
635-788, gnl|bosTau2|chr5 (60696013-60695860) |
|
635-788, gnl|canFam2|chr27 (41564307-41564071) |
|
635-788, gnl|hg17|chr12 (6429542-6429766) |
|
635-788, gnl|Hg17|chr12 (6429599-6429779) |
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635-788, gnl|loxAfr1|scaffold_13632 (19246-19470) |
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635-788, gnl|mm7|chr6 (125261059-125260833) |
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635-788, gnl|Mm7|chr6 (125260998-125260818) |
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635-788, gnl|monDom2|scaffold_31 (14843911-14844164) |
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635-788, gnl|rheMac2|chr11 (6604033-6604258) |
|
635-788, gnl|rn3|chr4 (161598970-161598743) |
| |
|
993-1270, gnl|bosTau2|chr5 (60694576-60694301) |
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993-1270, gnl|Hg17|chr12 (6430695-6430949) |
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993-1270, gnl|Mm7|chr6 (125259742-125259501) |
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cly (0.482567) |
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cag (0.302389) |
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fty (0.17584) |
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nco (0.161734) |
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thg (0.126791) |
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med (0.116252) |
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cty (0.10408) |
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cly (0.482567) |
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cag (0.302389) |
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fty (0.17584) |
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nco (0.161734) |
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thg (0.126791) |
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med (0.116252) |
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cty (0.10408) |
