Non-Coding RNA Search

Ss1.1-Thy1-THY010061E03.5

Sequence:


               
               AGTTCCCTAGCTCCAGCCGCCGTCGCCGTCGCCTGTGCAGTTGCAGCCGCCGCCGCCTCC
CGCCAGCTCGCTCCGGGGAAAGAGAACGCGCGCGAGCTCGGGCGTCCCCGCCCCAGCCTT
TCCCGGAGTCATGAATCCCAACTGCGCCCGGTGCGGCAAGATCGTGTACCCCACGGAGAA
GGTGAACTGTCTGGATAAGTTCTGGCATAAAGCATGCTTCCACTGCGAGACCTGCAAGAT
GACTCTCAACATGAAGAACTACAAGGGCTACGAGAAGAAGCCCTACTGCAACGCACACTA
CCCCAAGCAGTCCTTCACCATGGTGGCTGACACCCCAGAAAACCTCCGCCTCAAGCAACA
GAGTGAGCTCCAGAGTCAGGTGCGCTACAAGGAGGAGTTTGAGAAGAACAAGGGCAAAGG
CTTCAGCGTGGTGGCGGACACGCCTGAACTCCAGAGAATCAAGAAGACCCAGGATCAGAT
CAGCAACATAAAATACCACGAGGAGTTTGAGAAGAGAGCCGCATGGGCCCCAGCGGGGGT
GAGGGCCTGGAGCCCGAGCGCCGAGATGCCCAGGACACCAGCTACCGGCGGCCCCAGGAG
CAGCAGCAGCCTCATCACATCCCGACCAGCACCCCAGTTTACCAGCAGCCCCAGCAGCAG
CAGGCGGCCCAGTCCTATGGTGGCTACAAGGAGCCTGCAGCCCCAGTTTCCATACAGCGC
AGCGCCCCAGGAGGGGGCGGGAAGCGGTACCGCGCCGTGTATGACTACAGTGCCGCCGAC
GAGGACGAGGTCTCCTTCCAGGACGGGGACACCATTGTCAACGTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCCCTAGCTCCAGCCGCCGTCGCCGTCGCCTGTGCAGTTGCAGCCGCCGCCGCCTCC
CGCCAGCTCGCTCCGGGGAAAGAGAACGCGCGCGAGCTCGGGCGTCCCCGCCCCAGCCTT
TCCCGGAGTCATGAATCCCAACTGCGCCCGGTGCGGCAAGATCGTGTACCCCACGGAGAA
GGTGAACTGTCTGGATAAGTTCTGGCATAAAGCATGCTTCCACTGCGAGACCTGCAAGAT
GACTCTCAACATGAAGAACTACAAGGGCTACGAGAAGAAGCCCTACTGCAACGCACACTA
CCCCAAGCAGTCCTTCACCATGGTGGCTGACACCCCAGAAAACCTCCGCCTCAAGCAACA
GAGTGAGCTCCAGAGTCAGGTGCGCTACAAGGAGGAGTTTGAGAAGAACAAGGGCAAAGG
CTTCAGCGTGGTGGCGGACACGCCTGAACTCCAGAGAATCAAGAAGACCCAGGATCAGAT
CAGCAACATAAAATACCACGAGGAGTTTGAGAAGAGAGCCGCATGGGCCCCAGCGGGGGT
GAGGGCCTGGAGCCCGAGCGCCGAGATGCCCAGGACACCAGCTACCGGCGGCCCCAGGAG
CAGCAGCAGCCTCATCACATCCCGACCAGCACCCCAGTTTACCAGCAGCCCCAGCAGCAG
CAGGCGGCCCAGTCCTATGGTGGCTACAAGGAGCCTGCAGCCCCAGTTTCCATACAGCGC
AGCGCCCCAGGAGGGGGCGGGAAGCGGTACCGCGCCGTGTATGACTACAGTGCCGCCGAC
GAGGACGAGGTCTCCTTCCAGGACGGGGACACCATTGTCAACGTGCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               O77506_RABIT

Coded protein: 1 entry(ies)

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Protein identifier


               
               O77506_RABIT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-199, gnl|bosTau2|chr19 (41580837-41580639)
               

               
               1-199, gnl|Hg17|chr17 (34279840-34280037)
               

               
               1-199, gnl|Mm7|chr11 (97908711-97908901)
               


               
               488-637, gnl|bosTau2|chr19 (35594284-35594137)
               

               
               488-637, gnl|Hg17|chr17 (34324104-34324254)
               

               
               488-637, gnl|Mm7|chr11 (97942585-97942741)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-199, gnl|bosTau2|chr19 (41580837-41580639)
               

               
               1-199, gnl|Hg17|chr17 (34279840-34280037)
               

               
               1-199, gnl|Mm7|chr11 (97908711-97908901)
               


               
               488-637, gnl|bosTau2|chr19 (35594284-35594137)
               

               
               488-637, gnl|Hg17|chr17 (34324104-34324254)
               

               
               488-637, gnl|Mm7|chr11 (97942585-97942741)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.151194)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

	1-199, gnl\|bosTau2\|chr19 (41580837-41580639)
	1-199, gnl\|Hg17\|chr17 (34279840-34280037)
	1-199, gnl\|Mm7\|chr11 (97908711-97908901)

	488-637, gnl\|bosTau2\|chr19 (35594284-35594137)
	488-637, gnl\|Hg17\|chr17 (34324104-34324254)
	488-637, gnl\|Mm7\|chr11 (97942585-97942741)