Ss1.1-Thy1-THY010061G01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGGGCCGGCGGCGGGTGGAAGAGTCGTACAGTGGAGGGGTTAGCGGCTGGACGTGTTC GCCTGAGCTCCTGCCGCCGCCGCCACCTCACAATCCTGCCGCATCGACCGCCGCTCTCTA GCTTCTGACCCTATCTCGACGGGGGGCGGGGGTCTTAGGAGCCGTGTCCCAGCCTCACAC CTCACGGGGCTGGTATCGACTTCTGAAGGAACCGGTCTCAGCGCAGGAGCGCCTCGGGCG CGGCGCAAAGCCCGAACGGACGGCGGGGGCGGCTGGAGCCTCTCCCGGGGGAGCCGCGCC TGAGGAGGCGGAAGAGCCCCCCTGACGCGGCCGGCGTGAGCTGCTGCCACCGCCCCTCCC GTTCTCGCCCCGGCCGGCCTGGGCCACTGCCCCTGCCGCTGAGGCGGCGGCGGCGGCGGC TCTGCTCCCCTCGTCGGCGCTCCGCCATCCGCCTCTCCGCTCTAGAGCCGGTCGGTTAGG CTCTTCGGGGCCTCGCTCTCCCCCCTTCCCTTGCCCTCCCCTCCCGTACCCCTCCTCTAC CCCACCCAAGCCCGGCTCCCCGGCGGCCCGGCCATGGCGTGCGGAGCTACTCTGAAAAGG ACTCTGGATTTCGACCCGCTGCTGAGCCCAGCGTCCCCAAAGCGGAGGCGATGTGCGCCA TTGTCGGCGCCCACCTCGGCTGCCGCCTCCCCGTCGTCGGCGGCCGCGGCCACAGCCGCC TCCTTTTCGGCCGCCGCCGCCTCGCCGCAGAAGTATCTCCGAATGGAGCCGTCTCCCTTC GGCGACGTCTCCTCCCGCCTCACCACAGAACAAATTCTGTACAACATAAAACAAGAGTAT AAGCGCATGCAGAAGAGAAGACATTTAGAAACTAGTTTCCAACAGACAGATCCATGCTGT ACTTCTGATGCACAGCCACATGCATTTCTCCTCAGTGGACCAGCTTCACCAGGGACTCCA TCAGCAACGTCCTCACCATTAAAAAAAGAACAGCCCTTATTCACCCTACGGCAGGTTGGG ATGATCTGTGAACGTTTATTGAAAGAACGTGAAGAGAAAGTTCGAGAAGAGTATGAAGAA ATACTGAACACAAAACTTGCAGAACAATATGATGCATTTGTGAAGTTTACGCATGATCAA ATAATGCGACGATATGGAGAACAGCCTGCTAGTTATGTTTCATGAATCACGTTTTCTGCA GTTGTGGGCTGCCTTGTTCCTTGTTGAGTTGTTGCAAGAGGTCCCAATTATGACATGCAG CAATGCCAATACCCCCTGTGAATACAGGTTATTTCAAGCTTTTGTCAGTGGCAACCACTC TTAGGCAGCAACTGGTTTTGGAAATTTCCCTGATGTCAATACCACCCGGATGTGGACATT TGCTACCTGTATTAATGCCAGTGGCCTCATTTGCTGTATCATTACAATTTGGCTTCTTAT ATTAATGTTTGAAAAAGATTAAAGCTGGTATTCTAAGAACATGCCCTTCACTGGTTGTGT AAATAAAACTGTAGAATGACACTTCAGATGAAGTTAGTGTGATTTTAATTGTGCACTACA ACCAAGATGTAACCAGTTATTAATAATTTAGAATGTAATCCCAGGACATTATTAAGCAAA TAGCCTACAGTGCTTCCTGTGAAATAGTGAAGGAGGAGGGCATTTCTGTATTCCAGGACT TTTCTTGGGGTTTCAGAATGGGTTTATATGATTTCCTTTTTTTTTTTTTTTTTGGTAGTT TTTTTATTTATTCTCTCAGTCTTT------------------------------------ ------------TGTTTTACTACCCTTGTAGTACTGGAATTTAGTTGGAATAAAACATTT ACTTCTAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGGGCCGGCGGCGGGTGGAAGAGTCGTACAGTGGAGGGGTTAGCGGCTGGACGTGTTC GCCTGAGCTCCTGCCGCCGCCGCCACCTCACAATCCTGCCGCATCGACCGCCGCTCTCTA GCTTCTGACCCTATCTCGACGGGGGGCGGGGGTCTTAGGAGCCGTGTCCCAGCCTCACAC CTCACGGGGCTGGTATCGACTTCTGAAGGAACCGGTCTCAGCGCAGGAGCGCCTCGGGCG CGGCGCAAAGCCCGAACGGACGGCGGGGGCGGCTGGAGCCTCTCCCGGGGGAGCCGCGCC TGAGGAGGCGGAAGAGCCCCCCTGACGCGGCCGGCGTGAGCTGCTGCCACCGCCCCTCCC GTTCTCGCCCCGGCCGGCCTGGGCCACTGCCCCTGCCGCTGAGGCGGCGGCGGCGGCGGC TCTGCTCCCCTCGTCGGCGCTCCGCCATCCGCCTCTCCGCTCTAGAGCCGGTCGGTTAGG CTCTTCGGGGCCTCGCTCTCCCCCCTTCCCTTGCCCTCCCCTCCCGTACCCCTCCTCTAC CCCACCCAAGCCCGGCTCCCCGGCGGCCCGGCCATGGCGTGCGGAGCTACTCTGAAAAGG ACTCTGGATTTCGACCCGCTGCTGAGCCCAGCGTCCCCAAAGCGGAGGCGATGTGCGCCA TTGTCGGCGCCCACCTCGGCTGCCGCCTCCCCGTCGTCGGCGGCCGCGGCCACAGCCGCC TCCTTTTCGGCCGCCGCCGCCTCGCCGCAGAAGTATCTCCGAATGGAGCCGTCTCCCTTC GGCGACGTCTCCTCCCGCCTCACCACAGAACAAATTCTGTACAACATAAAACAAGAGTAT AAGCGCATGCAGAAGAGAAGACATTTAGAAACTAGTTTCCAACAGACAGATCCATGCTGT ACTTCTGATGCACAGCCACATGCATTTCTCCTCAGTGGACCAGCTTCACCAGGGACTCCA TCAGCAACGTCCTCACCATTAAAAAAAGAACAGCCCTTATTCACCCTACGGCAGGTTGGG ATGATCTGTGAACGTTTATTGAAAGAACGTGAAGAGAAAGTTCGAGAAGAGTATGAAGAA ATACTGAACACAAAACTTGCAGAACAATATGATGCATTTGTGAAGTTTACGCATGATCAA ATAATGCGACGATATGGAGAACAGCCTGCTAGTTATGTTTCATGAATCACGTTTTCTGCA GTTGTGGGCTGCCTTGTTCCTTGTTGAGTTGTTGCAAGAGGTCCCAATTATGACATGCAG CAATGCCAATACCCCCTGTGAATACAGGTTATTTCAAGCTTTTGTCAGTGGCAACCACTC TTAGGCAGCAACTGGTTTTGGAAATTTCCCTGATGTCAATACCACCCGGATGTGGACATT TGCTACCTGTATTAATGCCAGTGGCCTCATTTGCTGTATCATTACAATTTGGCTTCTTAT ATTAATGTTTGAAAAAGATTAAAGCTGGTATTCTAAGAACATGCCCTTCACTGGTTGTGT AAATAAAACTGTAGAATGACACTTCAGATGAAGTTAGTGTGATTTTAATTGTGCACTACA ACCAAGATGTAACCAGTTATTAATAATTTAGAATGTAATCCCAGGACATTATTAAGCAAA TAGCCTACAGTGCTTCCTGTGAAATAGTGAAGGAGGAGGGCATTTCTGTATTCCAGGACT TTTCTTGGGGTTTCAGAATGGGTTTATATGATTTCCTTTTTTTTTTTTTTTTTGGTAGTT TTTTTATTTATTCTCTCAGTCTTT------------------------------------ ------------TGTTTTACTACCCTTGTAGTACTGGAATTTAGTTGGAATAAAACATTT ACTTCTAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 200-318, + strand, RNAz p=0.780207 | |
| 434-549, - strand, RNAz p=0.529214 | |
| 668-808, - strand, RNAz p=0.925101 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 200-318, + strand, RNAz p=0.780207 | |
| 434-549, - strand, RNAz p=0.529214 | |
| 668-808, - strand, RNAz p=0.925101 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_018064, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-808, gnl|bosTau2|chr9 (34503235-34504010) | |
| 1-808, gnl|Hg17|chr6 (88468691-88467887) | |
| 1-808, gnl|Mm7|chr4 (34689309-34689952) | |
| 951-1102, gnl|bosTau2|chr9 (34522313-34522464) | |
| 951-1102, gnl|canFam2|chr12 (50116607-50116764) | |
| 951-1102, gnl|canFam2|chr12 (50116780-50116631) | |
| 951-1102, gnl|danRer3|chr16 (44258025-44257879) | |
| 951-1102, gnl|danRer3|chr16 (44257883-44258011) | |
| 951-1102, gnl|dasNov1|scaffold_133059 (2720-2870) | |
| 951-1102, gnl|dasNov1|scaffold_2511 (99570-99408) | |
| 951-1102, gnl|echTel1|scaffold_211133 (375-224) | |
| 951-1102, gnl|echTel1|scaffold_276765 (68955-69087) | |
| 951-1102, gnl|fr1|chrUn (96961342-96961205) | |
| 951-1102, gnl|fr1|chrUn (242242359-242242211) | |
| 951-1102, gnl|galGal2|chr3 (74712964-74712815) | |
| 951-1102, gnl|galGal2|chr3 (74712799-74712950) | |
| 951-1102, gnl|hg17|chr4 (151068827-151068984) | |
| 951-1102, gnl|hg17|chr6 (88444231-88444391) | |
| 951-1102, gnl|Hg17|chr6 (88444406-88444255) | |
| 951-1102, gnl|loxAfr1|scaffold_55480 (12740-12587) | |
| 951-1102, gnl|loxAfr1|scaffold_55480 (12571-12722) | |
| 951-1102, gnl|mm7|chr4 (34703984-34703822) | |
| 951-1102, gnl|mm7|chr4 (34703806-34703965) | |
| 951-1102, gnl|Mm7|chr4 (34703805-34703956) | |
| 951-1102, gnl|monDom2|scaffold_0 (141462573-141462417) | |
| 951-1102, gnl|monDom2|scaffold_0 (141462401-141462551) | |
| 951-1102, gnl|oryCun1|scaffold_182355 (1823-1673) | |
| 951-1102, gnl|oryCun1|scaffold_182355 (1657-1808) | |
| 951-1102, gnl|panTro1|chr3 (168351909-168352066) | |
| 951-1102, gnl|panTro1|chr5 (90147335-90147495) | |
| 951-1102, gnl|rheMac2|chr4 (83594597-83594757) | |
| 951-1102, gnl|rheMac2|chr5 (142022943-142023099) | |
| 951-1102, gnl|rn3|chr5 (51166284-51166122) | |
| 951-1102, gnl|rn3|chr5 (51166106-51166255) | |
| 951-1102, gnl|tetNig1|chr10 (6577723-6577860) | |
| 951-1102, gnl|tetNig1|chr10 (6577876-6577728) | |
| 951-1102, gnl|xenTro1|scaffold_73 (825862-825714) | |
| 951-1102, gnl|xenTro1|scaffold_73 (825698-825841) | |
| 1175-1765, gnl|bosTau2|chr9 (34525090-34525679) | |
| 1175-1765, gnl|Hg17|chr6 (88442044-88441465) | |
| 1175-1765, gnl|Mm7|chr4 (34704894-34705488) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-808, gnl|bosTau2|chr9 (34503235-34504010) | |
| 1-808, gnl|Hg17|chr6 (88468691-88467887) | |
| 1-808, gnl|Mm7|chr4 (34689309-34689952) | |
| 951-1102, gnl|bosTau2|chr9 (34522313-34522464) | |
| 951-1102, gnl|canFam2|chr12 (50116607-50116764) | |
| 951-1102, gnl|canFam2|chr12 (50116780-50116631) | |
| 951-1102, gnl|danRer3|chr16 (44258025-44257879) | |
| 951-1102, gnl|danRer3|chr16 (44257883-44258011) | |
| 951-1102, gnl|dasNov1|scaffold_133059 (2720-2870) | |
| 951-1102, gnl|dasNov1|scaffold_2511 (99570-99408) | |
| 951-1102, gnl|echTel1|scaffold_211133 (375-224) | |
| 951-1102, gnl|echTel1|scaffold_276765 (68955-69087) | |
| 951-1102, gnl|fr1|chrUn (96961342-96961205) | |
| 951-1102, gnl|fr1|chrUn (242242359-242242211) | |
| 951-1102, gnl|galGal2|chr3 (74712964-74712815) | |
| 951-1102, gnl|galGal2|chr3 (74712799-74712950) | |
| 951-1102, gnl|hg17|chr4 (151068827-151068984) | |
| 951-1102, gnl|hg17|chr6 (88444231-88444391) | |
| 951-1102, gnl|Hg17|chr6 (88444406-88444255) | |
| 951-1102, gnl|loxAfr1|scaffold_55480 (12740-12587) | |
| 951-1102, gnl|loxAfr1|scaffold_55480 (12571-12722) | |
| 951-1102, gnl|mm7|chr4 (34703984-34703822) | |
| 951-1102, gnl|mm7|chr4 (34703806-34703965) | |
| 951-1102, gnl|Mm7|chr4 (34703805-34703956) | |
| 951-1102, gnl|monDom2|scaffold_0 (141462573-141462417) | |
| 951-1102, gnl|monDom2|scaffold_0 (141462401-141462551) | |
| 951-1102, gnl|oryCun1|scaffold_182355 (1823-1673) | |
| 951-1102, gnl|oryCun1|scaffold_182355 (1657-1808) | |
| 951-1102, gnl|panTro1|chr3 (168351909-168352066) | |
| 951-1102, gnl|panTro1|chr5 (90147335-90147495) | |
| 951-1102, gnl|rheMac2|chr4 (83594597-83594757) | |
| 951-1102, gnl|rheMac2|chr5 (142022943-142023099) | |
| 951-1102, gnl|rn3|chr5 (51166284-51166122) | |
| 951-1102, gnl|rn3|chr5 (51166106-51166255) | |
| 951-1102, gnl|tetNig1|chr10 (6577723-6577860) | |
| 951-1102, gnl|tetNig1|chr10 (6577876-6577728) | |
| 951-1102, gnl|xenTro1|scaffold_73 (825862-825714) | |
| 951-1102, gnl|xenTro1|scaffold_73 (825698-825841) | |
| 1175-1765, gnl|bosTau2|chr9 (34525090-34525679) | |
| 1175-1765, gnl|Hg17|chr6 (88442044-88441465) | |
| 1175-1765, gnl|Mm7|chr4 (34704894-34705488) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| pla (1.47039) | |
| cbe (0.717703) | |
| tes (0.623441) | |
| sme (0.610874) | |
| fce (0.543183) | |
| elu (0.385356) | |
| gul (0.355177) | |
| vin (0.332557) | |
| cki (0.330469) | |
| fat (0.294855) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ese (0.253004) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| spc (0.226732) | |
| ldo (0.194005) | |
| ton (0.1755) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (1.47039) | |
| cbe (0.717703) | |
| tes (0.623441) | |
| sme (0.610874) | |
| fce (0.543183) | |
| elu (0.385356) | |
| gul (0.355177) | |
| vin (0.332557) | |
| cki (0.330469) | |
| fat (0.294855) | |
| ski (0.29347) | |
| cte (0.29274) | |
| lin (0.291206) | |
| ese (0.253004) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| spc (0.226732) | |
| ldo (0.194005) | |
| ton (0.1755) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lun (0.150489) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) |