Non-Coding RNA Search

Ss1.1-Thy1-THY010061G12.5

Sequence:


               
               GTTGGCTGCGGCAGCAGGTAGCAAAGTGACCCTGAGGACTTGAGTGCTCCGGTAGCCCCC
GCGGCTGGAGAGTGAGCAGTTACCATGGACGGGTTCCGTATATTCACTTCAGATAATTAC
ACAGAGGATGACTTGGGCTCAGGTGACTATGACTCCATAAAGGAACCCTGTTTCCGGGAG
GAAAATGCCCATTTCAACCGAATCTTTCTGCCCACTGTCTACTCCATCATCTTCTTAACT
GGCATAGTGGGTAATGGATTGGTCATCCTGGTCATGGGTTACCAGAAGAAACTGAGAAGC
ATGACGGACAAGTACAGACTGCACCTGTCTGTGGCAGACCTTCTCTTTGTCCTCACACTT
CCCTTCTGGGCAGTTGATGCCGTGGCAAACTGGTACTTTGGGAAGTTTCTGTGCAAGGCA
GTCCATGTCATCTATACTGTCAATCTCTACAGCAGTGTGCTCATCCTGGCCTTCATCAGT
CTGGACCGGTACCTGGCTATCGTCCATGCCACCAACAGTCAGAGGCCAAGGAAGCTATTG
GCTGAAAAAGTGGTCTATGTCGGCGTCTGGATACCTGCCCTCCTGTTGACTATTCCTGAT
TTCATCTTTGCGAATGTCAGGGAGGGGGATGGGAGGTACATCTGTGACCGCTTCTACCCC
AATGACCTGTGGTTAGTGGTGTTCCAGTTTCAGCACATCATGGTTGGCCTTATCCTGCCG
GGTATTGTCATCCTATCTTGCTATTGCATCATCATCTCCAAGCTGTCCCACTCCAAGGGC
TATCAGAAGCGCAAAGCTCTCAAAACCACCGTTATCCTCATCCTGGCTTTCTTCGCCTGC
TGGCTGCCATACTACATCGGGATCAGCATCGACTCCTTCATCCTCCTGGAAATCATCCAG
CAAGGGTGTGAGTTTGAGAGCACTGTGCACAAGTGGATTTCCATCACTGAGGCCCTTGCC
TTTTTCCACTGTTGCCTGAATCCTATCCTCTACGCTTTCCTTGGAGCCAAATTTAAAACC
TCTGCCCAGCACGCACTCACCTCTGTGAGCAGAGGGTCCAGCCTAAAGATCCTCTCCAAG
GGAAAGCGGGGTGGACATTCTTCTGTTTCAACCGAGTCAGAGTCTTCGAGTTTTCACTCC
AGCTAACACTGATGTAAAAGACTTATATACATGAAAGAACTTTTTTTTTAAGTTACACAT
TTTTTCAGCTATAAAAGACTGACCAATTCTGTACAGTTTTTATTGACTGTTGGATTTTTT
TTCTCATGTTCCTTTAGTTTTTATGAGGTTTAATTGACTTATTTATATATTTTTTTGTTT
TGTGTTGATACGTGTCTAGGCAGGACCTGGTGGCCAAGTTGTTAGTTGCTGATTTGTAGG
ACTGTAGAAAAGGGAACTGAACATTCTAGCGTGTGTAGTGAATCACTTAAGCTAGAAACG
ATCCTCAGCTGTTTGTGCATAAATAATCTCTCCATTCCGATGGAACATTTTTTTTCTTGT
CCTTAAATTGTTTGGTTGCACTAGGTGATTTTGCTGTAGAAGGTGTAACTTATAACCAAA
GCCTGAAGTGGTATAGAAATGCTGGTTTTTCAGTTTTCAGAAATGTGTTGATTTCAGCAC
CTGCATTGTACAGTCTTGTATTCAGTTGTTAATAAAAGTACATGATAAACTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGCTGCGGCAGCAGGTAGCAAAGTGACCCTGAGGACTTGAGTGCTCCGGTAGCCCCC
GCGGCTGGAGAGTGAGCAGTTACCATGGACGGGTTCCGTATATTCACTTCAGATAATTAC
ACAGAGGATGACTTGGGCTCAGGTGACTATGACTCCATAAAGGAACCCTGTTTCCGGGAG
GAAAATGCCCATTTCAACCGAATCTTTCTGCCCACTGTCTACTCCATCATCTTCTTAACT
GGCATAGTGGGTAATGGATTGGTCATCCTGGTCATGGGTTACCAGAAGAAACTGAGAAGC
ATGACGGACAAGTACAGACTGCACCTGTCTGTGGCAGACCTTCTCTTTGTCCTCACACTT
CCCTTCTGGGCAGTTGATGCCGTGGCAAACTGGTACTTTGGGAAGTTTCTGTGCAAGGCA
GTCCATGTCATCTATACTGTCAATCTCTACAGCAGTGTGCTCATCCTGGCCTTCATCAGT
CTGGACCGGTACCTGGCTATCGTCCATGCCACCAACAGTCAGAGGCCAAGGAAGCTATTG
GCTGAAAAAGTGGTCTATGTCGGCGTCTGGATACCTGCCCTCCTGTTGACTATTCCTGAT
TTCATCTTTGCGAATGTCAGGGAGGGGGATGGGAGGTACATCTGTGACCGCTTCTACCCC
AATGACCTGTGGTTAGTGGTGTTCCAGTTTCAGCACATCATGGTTGGCCTTATCCTGCCG
GGTATTGTCATCCTATCTTGCTATTGCATCATCATCTCCAAGCTGTCCCACTCCAAGGGC
TATCAGAAGCGCAAAGCTCTCAAAACCACCGTTATCCTCATCCTGGCTTTCTTCGCCTGC
TGGCTGCCATACTACATCGGGATCAGCATCGACTCCTTCATCCTCCTGGAAATCATCCAG
CAAGGGTGTGAGTTTGAGAGCACTGTGCACAAGTGGATTTCCATCACTGAGGCCCTTGCC
TTTTTCCACTGTTGCCTGAATCCTATCCTCTACGCTTTCCTTGGAGCCAAATTTAAAACC
TCTGCCCAGCACGCACTCACCTCTGTGAGCAGAGGGTCCAGCCTAAAGATCCTCTCCAAG
GGAAAGCGGGGTGGACATTCTTCTGTTTCAACCGAGTCAGAGTCTTCGAGTTTTCACTCC
AGCTAACACTGATGTAAAAGACTTATATACATGAAAGAACTTTTTTTTTAAGTTACACAT
TTTTTCAGCTATAAAAGACTGACCAATTCTGTACAGTTTTTATTGACTGTTGGATTTTTT
TTCTCATGTTCCTTTAGTTTTTATGAGGTTTAATTGACTTATTTATATATTTTTTTGTTT
TGTGTTGATACGTGTCTAGGCAGGACCTGGTGGCCAAGTTGTTAGTTGCTGATTTGTAGG
ACTGTAGAAAAGGGAACTGAACATTCTAGCGTGTGTAGTGAATCACTTAAGCTAGAAACG
ATCCTCAGCTGTTTGTGCATAAATAATCTCTCCATTCCGATGGAACATTTTTTTTCTTGT
CCTTAAATTGTTTGGTTGCACTAGGTGATTTTGCTGTAGAAGGTGTAACTTATAACCAAA
GCCTGAAGTGGTATAGAAATGCTGGTTTTTCAGTTTTCAGAAATGTGTTGATTTCAGCAC
CTGCATTGTACAGTCTTGTATTCAGTTGTTAATAAAAGTACATGATAAACTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q764M9_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q764M9_PIG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               260-379, - strand, RNAz p=0.98491
               

               
               805-924, - strand, RNAz p=0.790357
               

               
               1005-1124, - strand, RNAz p=0.550147

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               260-379, - strand, RNAz p=0.98491
               

               
               805-924, - strand, RNAz p=0.790357
               

               
               1005-1124, - strand, RNAz p=0.550147

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               100-1670, gnl|bosTau2|chr22 (5392154-5390586)
               

               
               100-1670, gnl|Hg17|chr2 (136707214-136705654)
               

               
               100-1670, gnl|Mm7|chr1 (128470039-128468341)
               


               
               205-510, gnl|bosTau2|chr19 (34059281-34059586)
               

               
               205-510, gnl|Hg17|chr17 (35965479-35965174)
               

               
               205-510, gnl|Mm7|chr11 (99254956-99254651)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-1670, gnl|bosTau2|chr22 (5392154-5390586)
               

               
               100-1670, gnl|Hg17|chr2 (136707214-136705654)
               

               
               100-1670, gnl|Mm7|chr1 (128470039-128468341)
               


               
               205-510, gnl|bosTau2|chr19 (34059281-34059586)
               

               
               205-510, gnl|Hg17|chr17 (35965479-35965174)
               

               
               205-510, gnl|Mm7|chr11 (99254956-99254651)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               thg (1.52149)
               

               
               fty (1.05504)
               

               
               cbl (0.45919)
               

               
               spl (0.429553)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (1.52149)
               

               
               fty (1.05504)
               

               
               cbl (0.45919)
               

               
               spl (0.429553)
               

               
               jca (0.34188)
               

               
               eye (0.341006)
               

               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	260-379, - strand, RNAz p=0.98491
	805-924, - strand, RNAz p=0.790357
	1005-1124, - strand, RNAz p=0.550147

	100-1670, gnl\|bosTau2\|chr22 (5392154-5390586)
	100-1670, gnl\|Hg17\|chr2 (136707214-136705654)
	100-1670, gnl\|Mm7\|chr1 (128470039-128468341)

	205-510, gnl\|bosTau2\|chr19 (34059281-34059586)
	205-510, gnl\|Hg17\|chr17 (35965479-35965174)
	205-510, gnl\|Mm7\|chr11 (99254956-99254651)

	thg (1.52149)
	fty (1.05504)
	cbl (0.45919)
	spl (0.429553)
	jca (0.34188)
	eye (0.341006)
	hyp (0.285673)
	ebs (0.236602)
	med (0.232504)
	mgp (0.230681)
	spc (0.226732)
	nms (0.213858)
	col (0.195008)
	gul (0.177588)
	ill (0.175593)
	sin (0.174948)
	mcp (0.170648)
	csp (0.161186)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	lnt (0.142308)
	csk (0.140746)
	nmm (0.132802)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	ecc (0.115035)
	cty (0.10408)
	nbm (0.0993246)