Ss1.1-Thy1-THY010062A12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTTTGTATCCGGGCTGTGAGGTGCTCGGCGTCTCCGCAGACCTTGCTGCCTCTGTCT CTTTAACGCGAGAGGAAGCGATGCAGAGGGGTGGAAAATGGCAGAGCTGCAGATGTTACT AGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTGATAGAGAGTTACCAGAACCTGACCCG GGTGGCGGACTACTGTGAAAACAACTACATACAGGCTACAGACAAGAGAAAAGCTTTAGA AGAGACCAAAGCCTACACAACCCAATCCCTAGCTAGTGTTGCTTATCAAATAAATGCATT GGCCAACAATGTACTCCAGTTGCTGGACATCCAAGCCTCTCAGCTTCGGAGAATGGAGTC TTCCATCAATCATATTTCACAGACTGTGGACATTCATAAAGAGAAAGTGGCTCGAAGAGA GATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCACAAAATAATAGCACCTGC AAATATGGAGCGTCCTGTAAGGTATATTCGAAAACCTATCGACTACACAGTTCTGGATGA TGTGGGTCATGGTGTCAAGCATGGAAATAACCAGCCTGCAAGAACTGGCACACTGTCGAG AACAAATCCTCCTACTCAGAAACCACCGAGTCCTCCCATGTCAGGCCGGGGAACGCTGGG ACGAAACACTCCTTACAAAACCCTGGAACCTGTTAAACCTCCAACAGTTCCTAATGACTA CATGACCAGTCCTGCTAGGCTCGGAAGTCAGCATAGTCCAGGCAGGACAGCTTCTTTAAA TCAGAGACCAAGGACGCACAGTGGAAGCAGTGGAGGCAGTGGAAGCCGAGAAAACAGTGG CAGCAGCAGTATTGGCATTCCCATTGCCGTGCCTACACCTTCACCACCTACTATTGGACC AGCAGCCCCGGGCTCAGCTCCTGGTTCCCAGTATGGCACAATGACCAGGCAGATCTCCCG ACACAACTCTACCACTTCCTCGACCTCTTCTGGTGGATACAGACGGACTCCCTCTGTGAC TGCTCAGTTTTCTGCTCAGCCTCATGTTAATGGAGGTCCACTTTATTCTCAGAATTCAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTTTGTATCCGGGCTGTGAGGTGCTCGGCGTCTCCGCAGACCTTGCTGCCTCTGTCT CTTTAACGCGAGAGGAAGCGATGCAGAGGGGTGGAAAATGGCAGAGCTGCAGATGTTACT AGAGGAGGAGATCCCGTCTGGCAAGAGGGCGCTGATAGAGAGTTACCAGAACCTGACCCG GGTGGCGGACTACTGTGAAAACAACTACATACAGGCTACAGACAAGAGAAAAGCTTTAGA AGAGACCAAAGCCTACACAACCCAATCCCTAGCTAGTGTTGCTTATCAAATAAATGCATT GGCCAACAATGTACTCCAGTTGCTGGACATCCAAGCCTCTCAGCTTCGGAGAATGGAGTC TTCCATCAATCATATTTCACAGACTGTGGACATTCATAAAGAGAAAGTGGCTCGAAGAGA GATTGGTATTTTGACAACAAATAAGAATACATCAAGAACTCACAAAATAATAGCACCTGC AAATATGGAGCGTCCTGTAAGGTATATTCGAAAACCTATCGACTACACAGTTCTGGATGA TGTGGGTCATGGTGTCAAGCATGGAAATAACCAGCCTGCAAGAACTGGCACACTGTCGAG AACAAATCCTCCTACTCAGAAACCACCGAGTCCTCCCATGTCAGGCCGGGGAACGCTGGG ACGAAACACTCCTTACAAAACCCTGGAACCTGTTAAACCTCCAACAGTTCCTAATGACTA CATGACCAGTCCTGCTAGGCTCGGAAGTCAGCATAGTCCAGGCAGGACAGCTTCTTTAAA TCAGAGACCAAGGACGCACAGTGGAAGCAGTGGAGGCAGTGGAAGCCGAGAAAACAGTGG CAGCAGCAGTATTGGCATTCCCATTGCCGTGCCTACACCTTCACCACCTACTATTGGACC AGCAGCCCCGGGCTCAGCTCCTGGTTCCCAGTATGGCACAATGACCAGGCAGATCTCCCG ACACAACTCTACCACTTCCTCGACCTCTTCTGGTGGATACAGACGGACTCCCTCTGTGAC TGCTCAGTTTTCTGCTCAGCCTCATGTTAATGGAGGTCCACTTTATTCTCAGAATTCAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-215, gnl|bosTau2|chr13 (9347335-9347118) | |
| 1-215, gnl|canFam2|chr2 (9833051-9832855) | |
| 1-215, gnl|danRer3|chrUn (159906046-159905856) | |
| 1-215, gnl|dasNov1|scaffold_117617 (1341-1483) | |
| 1-215, gnl|echTel1|scaffold_285691 (108174-108352) | |
| 1-215, gnl|fr1|chrUn (134029096-134028894) | |
| 1-215, gnl|galGal2|chr2 (15341531-15341358) | |
| 1-215, gnl|hg17|chr10 (27189675-27189871) | |
| 1-215, gnl|Hg17|chr10 (27189895-27189681) | |
| 1-215, gnl|loxAfr1|scaffold_2411 (8629-8825) | |
| 1-215, gnl|mm7|chr2 (23047253-23047449) | |
| 1-215, gnl|Mm7|chr2 (23047473-23047259) | |
| 1-215, gnl|monDom2|scaffold_7 (41563087-41562887) | |
| 1-215, gnl|oryCun1|scaffold_213115 (67080-66888) | |
| 1-215, gnl|panTro1|chr8 (27465429-27465625) | |
| 1-215, gnl|rheMac2|chr9 (26977011-26977207) | |
| 1-215, gnl|rn3|chr17 (96659398-96659594) | |
| 1-215, gnl|tetNig1|chr15 (2607624-2607805) | |
| 1-215, gnl|xenTro1|scaffold_42 (894562-894386) | |
| 381-559, gnl|bosTau2|chr13 (9285655-9285477) | |
| 381-559, gnl|canFam2|chr2 (9914011-9913811) | |
| 381-559, gnl|danRer3|chrUn (159948030-159947817) | |
| 381-559, gnl|dasNov1|scaffold_8685 (48813-48610) | |
| 381-559, gnl|echTel1|scaffold_285691 (20908-21112) | |
| 381-559, gnl|fr1|chrUn (134040279-134040090) | |
| 381-559, gnl|galGal2|chr2 (15390815-15390625) | |
| 381-559, gnl|hg17|chr10 (27105977-27106179) | |
| 381-559, gnl|Hg17|chr10 (27106178-27106000) | |
| 381-559, gnl|loxAfr1|scaffold_12786 (59584-59379) | |
| 381-559, gnl|mm7|chr2 (22978370-22978573) | |
| 381-559, gnl|Mm7|chr2 (22978572-22978394) | |
| 381-559, gnl|monDom2|scaffold_7 (41635337-41635136) | |
| 381-559, gnl|oryCun1|scaffold_189296 (41550-41754) | |
| 381-559, gnl|panTro1|chr8 (27384291-27384493) | |
| 381-559, gnl|rheMac2|chr9 (26889911-26890109) | |
| 381-559, gnl|rn3|chr17 (96606917-96607120) | |
| 381-559, gnl|tetNig1|chr6 (5589332-5589141) | |
| 381-559, gnl|xenTro1|scaffold_42 (922381-922198) | |
| 660-801, gnl|bosTau2|chr13 (9281285-9281144) | |
| 660-801, gnl|canFam2|chr2 (9922546-9922377) | |
| 660-801, gnl|danRer3|chr15 (18174294-18174131) | |
| 660-801, gnl|dasNov1|scaffold_8685 (55176-55010) | |
| 660-801, gnl|echTel1|scaffold_285691 (14671-14840) | |
| 660-801, gnl|fr1|chrUn (134043620-134043437) | |
| 660-801, gnl|galGal2|chr2 (15404942-15404779) | |
| 660-801, gnl|hg17|chr10 (27097774-27097943) | |
| 660-801, gnl|Hg17|chr10 (27097928-27097787) | |
| 660-801, gnl|mm7|chr2 (22968005-22968174) | |
| 660-801, gnl|Mm7|chr2 (22968159-22968018) | |
| 660-801, gnl|monDom2|scaffold_7 (41647375-41647213) | |
| 660-801, gnl|oryCun1|scaffold_1308 (7780-7611) | |
| 660-801, gnl|panTro1|chr8 (27376112-27376281) | |
| 660-801, gnl|rheMac2|chr9 (26881763-26881932) | |
| 660-801, gnl|rn3|chr17 (96597517-96597686) | |
| 660-801, gnl|tetNig1|chr6 (5592674-5592503) | |
| 660-801, gnl|xenTro1|scaffold_42 (930630-930472) | |
| 899-1079, gnl|bosTau2|chr13 (9273491-9273311) | |
| 899-1079, gnl|Hg17|chr10 (27088177-27087997) | |
| 899-1079, gnl|Mm7|chr2 (22960926-22960746) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-215, gnl|bosTau2|chr13 (9347335-9347118) | |
| 1-215, gnl|canFam2|chr2 (9833051-9832855) | |
| 1-215, gnl|danRer3|chrUn (159906046-159905856) | |
| 1-215, gnl|dasNov1|scaffold_117617 (1341-1483) | |
| 1-215, gnl|echTel1|scaffold_285691 (108174-108352) | |
| 1-215, gnl|fr1|chrUn (134029096-134028894) | |
| 1-215, gnl|galGal2|chr2 (15341531-15341358) | |
| 1-215, gnl|hg17|chr10 (27189675-27189871) | |
| 1-215, gnl|Hg17|chr10 (27189895-27189681) | |
| 1-215, gnl|loxAfr1|scaffold_2411 (8629-8825) | |
| 1-215, gnl|mm7|chr2 (23047253-23047449) | |
| 1-215, gnl|Mm7|chr2 (23047473-23047259) | |
| 1-215, gnl|monDom2|scaffold_7 (41563087-41562887) | |
| 1-215, gnl|oryCun1|scaffold_213115 (67080-66888) | |
| 1-215, gnl|panTro1|chr8 (27465429-27465625) | |
| 1-215, gnl|rheMac2|chr9 (26977011-26977207) | |
| 1-215, gnl|rn3|chr17 (96659398-96659594) | |
| 1-215, gnl|tetNig1|chr15 (2607624-2607805) | |
| 1-215, gnl|xenTro1|scaffold_42 (894562-894386) | |
| 381-559, gnl|bosTau2|chr13 (9285655-9285477) | |
| 381-559, gnl|canFam2|chr2 (9914011-9913811) | |
| 381-559, gnl|danRer3|chrUn (159948030-159947817) | |
| 381-559, gnl|dasNov1|scaffold_8685 (48813-48610) | |
| 381-559, gnl|echTel1|scaffold_285691 (20908-21112) | |
| 381-559, gnl|fr1|chrUn (134040279-134040090) | |
| 381-559, gnl|galGal2|chr2 (15390815-15390625) | |
| 381-559, gnl|hg17|chr10 (27105977-27106179) | |
| 381-559, gnl|Hg17|chr10 (27106178-27106000) | |
| 381-559, gnl|loxAfr1|scaffold_12786 (59584-59379) | |
| 381-559, gnl|mm7|chr2 (22978370-22978573) | |
| 381-559, gnl|Mm7|chr2 (22978572-22978394) | |
| 381-559, gnl|monDom2|scaffold_7 (41635337-41635136) | |
| 381-559, gnl|oryCun1|scaffold_189296 (41550-41754) | |
| 381-559, gnl|panTro1|chr8 (27384291-27384493) | |
| 381-559, gnl|rheMac2|chr9 (26889911-26890109) | |
| 381-559, gnl|rn3|chr17 (96606917-96607120) | |
| 381-559, gnl|tetNig1|chr6 (5589332-5589141) | |
| 381-559, gnl|xenTro1|scaffold_42 (922381-922198) | |
| 660-801, gnl|bosTau2|chr13 (9281285-9281144) | |
| 660-801, gnl|canFam2|chr2 (9922546-9922377) | |
| 660-801, gnl|danRer3|chr15 (18174294-18174131) | |
| 660-801, gnl|dasNov1|scaffold_8685 (55176-55010) | |
| 660-801, gnl|echTel1|scaffold_285691 (14671-14840) | |
| 660-801, gnl|fr1|chrUn (134043620-134043437) | |
| 660-801, gnl|galGal2|chr2 (15404942-15404779) | |
| 660-801, gnl|hg17|chr10 (27097774-27097943) | |
| 660-801, gnl|Hg17|chr10 (27097928-27097787) | |
| 660-801, gnl|mm7|chr2 (22968005-22968174) | |
| 660-801, gnl|Mm7|chr2 (22968159-22968018) | |
| 660-801, gnl|monDom2|scaffold_7 (41647375-41647213) | |
| 660-801, gnl|oryCun1|scaffold_1308 (7780-7611) | |
| 660-801, gnl|panTro1|chr8 (27376112-27376281) | |
| 660-801, gnl|rheMac2|chr9 (26881763-26881932) | |
| 660-801, gnl|rn3|chr17 (96597517-96597686) | |
| 660-801, gnl|tetNig1|chr6 (5592674-5592503) | |
| 660-801, gnl|xenTro1|scaffold_42 (930630-930472) | |
| 899-1079, gnl|bosTau2|chr13 (9273491-9273311) | |
| 899-1079, gnl|Hg17|chr10 (27088177-27087997) | |
| 899-1079, gnl|Mm7|chr2 (22960926-22960746) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ece (0.229305) | |
| cmu (0.186393) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| cbl (0.114797) | |
| spc (0.113366) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| cmu (0.186393) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| cbl (0.114797) | |
| spc (0.113366) |