Ss1.1-Thy1-THY010062F04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTGACGTCACCGCATCGAGGCCCTCGGTGGGTCGCCGGCCCTCGTCCCGCGCGCGCCG TCTCCGCTGCCGGGCCGCCGGGAACATGGCCTCCGCCCTGGAGCAGTTCGTCAACAGCGT CCGCCAGCTCTCCGCCCAAGGGCAGATGACTCAGCTCTGTGAACTGATCAACAAGAGCGG GGAGCTCCTTGCGAAGAACTTATCCCACCTGGACACCGTGCTCGGGGCCCTGGACGTACA GGAGCACTCCTTGGGCGTCCTTGCCGTCCTGTTCGTGAAGTTTTCCATGCCCAGCGCGCC CGACTTCGAGACGCTCTTCTCGCAGGCTCAGCTCTTCATCAGCGCCTGCAACGGCGAGCA CATCCGCTACGCCACGGACACTTTCGCCGGGCTCTGCCACCAGCTGACCAATGCGCTCGT GGAAAGAAAACAGCCCCTGCGCGGCATCGGCGTCCTCAAGCAGGCCATAGACAAGATGCA GATGAGCGCCAACCAGCTGACCTCAGTCCACGCCGACCTCTGCCAGCTCTGCCTGCTGGC CAAGTGCTTCAAGCCCGCCCTCCCGTACCTCGACGTGGACATGGTGGACATCTGCAAGGA GAACGGGGCCTACGACGCCAGGCACTTTCTCTGCTACTACTACTACGGCGGCATGGTCTA CACCGGCCTGAAGAACTTCGAGAGGGCGCTCTACTTCTACGAGCAGGCCATCACCACCCC CGCCATGGCCGTCAGCCACATCATGCTGGAGTCGTACAAGAAGTACATCCTGGTGTCTCT GATCCTGCTCGGCAAGGTGCAGCAGCTTCCGAAGTACACGTCGCAGATCGTGGGCAGGTT CATCAAGCCTCTCAGCAACGCGTACCACGAGCTGGCACAAGTTTACTCGACCAACAGCCC CTCGGAGCTCCGTACCCTGGTGAACAAGCACAGCGAGACCTTCGTGCGCGACAGCAACAT GGGGCTGGTGAAGCAGTGCCTGTCCTCGCTGTACAAGAAGAACATCCAGCGGCTCACCAA GACGTTTTTAACGCTGTCGCTACAAGACATGGCAAGTCGAGTGCAGTTGTCCGGGCCGCA GGAGGCAGAGAAGTACGTCCTGCACATGATCGAGGACGGAGAAATCTTCGCCAGCATCAA CCAGAAGGATGGGATGGTCAGTTTCCACGACAACCCTGAGAAGTACAACAACCCCGCCAT GCTGCAGAGTATCGACCAAGAGATGCTGAAGTGCATAGAGCTGGACGAGCGGCTGAAGGC CATGGACCAGGAGATCACTGTGAACCCCCAGTTCGTGCAGAAGAGCATGGGCTCGCAGGA AGACGATTCGGGAAACAAACCGTCCAGCTACTCGTGAAGCCAGCGTCCGTCCGGGTTGAA GAGCAGCCGTGGCCCTGGCCGAGGCAAGTGGGGTGAGGCCGGCAGGGAGGAGCAGCCTGC CTCGCCCGGACCTGGAGACCGGCCGTCGCGTTTGGCAGCTCCAGTCCCGTGTGCTTTGGG AAGGCGTCCTCTCTGCAGACAAAGGATAACCTGTCAACCGTGCAAGGCCGGCCTGGGTTT ATTTACCCTCAGGTCAATGTCATGGCATTAAATCCACCTTTCTGTTTAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTGACGTCACCGCATCGAGGCCCTCGGTGGGTCGCCGGCCCTCGTCCCGCGCGCGCCG TCTCCGCTGCCGGGCCGCCGGGAACATGGCCTCCGCCCTGGAGCAGTTCGTCAACAGCGT CCGCCAGCTCTCCGCCCAAGGGCAGATGACTCAGCTCTGTGAACTGATCAACAAGAGCGG GGAGCTCCTTGCGAAGAACTTATCCCACCTGGACACCGTGCTCGGGGCCCTGGACGTACA GGAGCACTCCTTGGGCGTCCTTGCCGTCCTGTTCGTGAAGTTTTCCATGCCCAGCGCGCC CGACTTCGAGACGCTCTTCTCGCAGGCTCAGCTCTTCATCAGCGCCTGCAACGGCGAGCA CATCCGCTACGCCACGGACACTTTCGCCGGGCTCTGCCACCAGCTGACCAATGCGCTCGT GGAAAGAAAACAGCCCCTGCGCGGCATCGGCGTCCTCAAGCAGGCCATAGACAAGATGCA GATGAGCGCCAACCAGCTGACCTCAGTCCACGCCGACCTCTGCCAGCTCTGCCTGCTGGC CAAGTGCTTCAAGCCCGCCCTCCCGTACCTCGACGTGGACATGGTGGACATCTGCAAGGA GAACGGGGCCTACGACGCCAGGCACTTTCTCTGCTACTACTACTACGGCGGCATGGTCTA CACCGGCCTGAAGAACTTCGAGAGGGCGCTCTACTTCTACGAGCAGGCCATCACCACCCC CGCCATGGCCGTCAGCCACATCATGCTGGAGTCGTACAAGAAGTACATCCTGGTGTCTCT GATCCTGCTCGGCAAGGTGCAGCAGCTTCCGAAGTACACGTCGCAGATCGTGGGCAGGTT CATCAAGCCTCTCAGCAACGCGTACCACGAGCTGGCACAAGTTTACTCGACCAACAGCCC CTCGGAGCTCCGTACCCTGGTGAACAAGCACAGCGAGACCTTCGTGCGCGACAGCAACAT GGGGCTGGTGAAGCAGTGCCTGTCCTCGCTGTACAAGAAGAACATCCAGCGGCTCACCAA GACGTTTTTAACGCTGTCGCTACAAGACATGGCAAGTCGAGTGCAGTTGTCCGGGCCGCA GGAGGCAGAGAAGTACGTCCTGCACATGATCGAGGACGGAGAAATCTTCGCCAGCATCAA CCAGAAGGATGGGATGGTCAGTTTCCACGACAACCCTGAGAAGTACAACAACCCCGCCAT GCTGCAGAGTATCGACCAAGAGATGCTGAAGTGCATAGAGCTGGACGAGCGGCTGAAGGC CATGGACCAGGAGATCACTGTGAACCCCCAGTTCGTGCAGAAGAGCATGGGCTCGCAGGA AGACGATTCGGGAAACAAACCGTCCAGCTACTCGTGAAGCCAGCGTCCGTCCGGGTTGAA GAGCAGCCGTGGCCCTGGCCGAGGCAAGTGGGGTGAGGCCGGCAGGGAGGAGCAGCCTGC CTCGCCCGGACCTGGAGACCGGCCGTCGCGTTTGGCAGCTCCAGTCCCGTGTGCTTTGGG AAGGCGTCCTCTCTGCAGACAAAGGATAACCTGTCAACCGTGCAAGGCCGGCCTGGGTTT ATTTACCCTCAGGTCAATGTCATGGCATTAAATCCACCTTTCTGTTTAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chr19 (26495963-26496104) | |
| 1-141, gnl|Hg17|chr17 (17125340-17125170) | |
| 1-141, gnl|Mm7|chr11 (59921384-59921214) | |
| 271-381, gnl|bosTau2|chr19 (26499725-26499835) | |
| 271-381, gnl|canFam2|chr5 (45150290-45150120) | |
| 271-381, gnl|danRer3|chrNA (186233864-186233713) | |
| 271-381, gnl|dasNov1|scaffold_31463 (14737-14906) | |
| 271-381, gnl|echTel1|scaffold_294089 (5256-5088) | |
| 271-381, gnl|fr1|chrUn (245059470-245059627) | |
| 271-381, gnl|galGal2|chr14 (6855553-6855721) | |
| 271-381, gnl|hg17|chr17 (17114906-17115072) | |
| 271-381, gnl|Hg17|chr17 (17115047-17114937) | |
| 271-381, gnl|mm7|chr11 (59914549-59914715) | |
| 271-381, gnl|Mm7|chr11 (59914689-59914579) | |
| 271-381, gnl|monDom2|scaffold_193 (203446-203615) | |
| 271-381, gnl|oryCun1|scaffold_204258 (40108-40272) | |
| 271-381, gnl|panTro1|chr19 (17514848-17515014) | |
| 271-381, gnl|rheMac2|chr16 (17168127-17168293) | |
| 271-381, gnl|rn3|chr10 (46170279-46170444) | |
| 271-381, gnl|tetNig1|chrUn_random (4484035-4484196) | |
| 271-381, gnl|xenTro1|scaffold_142 (906689-906508) | |
| 518-732, gnl|bosTau2|chr19 (26504059-26504273) | |
| 518-732, gnl|Hg17|chr17 (17109030-17108810) | |
| 518-732, gnl|Mm7|chr11 (59909580-59909364) | |
| 846-1021, gnl|bosTau2|chr19 (26507924-26508099) | |
| 846-1021, gnl|canFam2|chr5 (45159246-45159065) | |
| 846-1021, gnl|danRer3|chrNA (186218057-186218238) | |
| 846-1021, gnl|dasNov1|scaffold_31463 (5169-5350) | |
| 846-1021, gnl|echTel1|scaffold_285805 (98603-98776) | |
| 846-1021, gnl|fr1|chrUn (245057342-245057523) | |
| 846-1021, gnl|galGal2|chr14 (6851291-6851472) | |
| 846-1021, gnl|hg17|chr17 (17104341-17104522) | |
| 846-1021, gnl|Hg17|chr17 (17104515-17104340) | |
| 846-1021, gnl|loxAfr1|scaffold_18388 (10862-10681) | |
| 846-1021, gnl|mm7|chr11 (59905821-59906002) | |
| 846-1021, gnl|Mm7|chr11 (59905995-59905820) | |
| 846-1021, gnl|monDom2|scaffold_193 (187859-188040) | |
| 846-1021, gnl|oryCun1|scaffold_202842 (78514-78348) | |
| 846-1021, gnl|panTro1|chr19 (17504226-17504407) | |
| 846-1021, gnl|rheMac2|chr16 (17155402-17155583) | |
| 846-1021, gnl|rn3|chr10 (46162147-46162328) | |
| 846-1021, gnl|tetNig1|chrUn_random (4482152-4482305) | |
| 846-1021, gnl|xenTro1|scaffold_142 (910081-909902) | |
| 1108-1222, gnl|bosTau2|chr19 (26512271-26512385) | |
| 1108-1222, gnl|canFam2|chr5 (45168160-45167978) | |
| 1108-1222, gnl|danRer3|chrNA (186217152-186217347) | |
| 1108-1222, gnl|dasNov1|scaffold_41445 (2323-2144) | |
| 1108-1222, gnl|echTel1|scaffold_207957 (6413-6597) | |
| 1108-1222, gnl|fr1|chrUn (245056836-245057004) | |
| 1108-1222, gnl|galGal2|chr14 (6847535-6847708) | |
| 1108-1222, gnl|hg17|chr17 (17092947-17093139) | |
| 1108-1222, gnl|Hg17|chr17 (17093079-17092965) | |
| 1108-1222, gnl|loxAfr1|scaffold_18388 (25980-25796) | |
| 1108-1222, gnl|mm7|chr11 (59901533-59901718) | |
| 1108-1222, gnl|Mm7|chr11 (59901664-59901550) | |
| 1108-1222, gnl|monDom2|scaffold_193 (185125-185297) | |
| 1108-1222, gnl|oryCun1|scaffold_124469 (3948-3815) | |
| 1108-1222, gnl|panTro1|chr19 (17492881-17493075) | |
| 1108-1222, gnl|rheMac2|chr16 (17144476-17144669) | |
| 1108-1222, gnl|rn3|chr10 (46156270-46156431) | |
| 1108-1222, gnl|xenTro1|scaffold_142 (911052-910887) | |
| 1302-1611, gnl|bosTau2|chr19 (26513584-26513901) | |
| 1302-1611, gnl|Hg17|chr17 (17091192-17090873) | |
| 1302-1611, gnl|Mm7|chr11 (59899655-59899349) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chr19 (26495963-26496104) | |
| 1-141, gnl|Hg17|chr17 (17125340-17125170) | |
| 1-141, gnl|Mm7|chr11 (59921384-59921214) | |
| 271-381, gnl|bosTau2|chr19 (26499725-26499835) | |
| 271-381, gnl|canFam2|chr5 (45150290-45150120) | |
| 271-381, gnl|danRer3|chrNA (186233864-186233713) | |
| 271-381, gnl|dasNov1|scaffold_31463 (14737-14906) | |
| 271-381, gnl|echTel1|scaffold_294089 (5256-5088) | |
| 271-381, gnl|fr1|chrUn (245059470-245059627) | |
| 271-381, gnl|galGal2|chr14 (6855553-6855721) | |
| 271-381, gnl|hg17|chr17 (17114906-17115072) | |
| 271-381, gnl|Hg17|chr17 (17115047-17114937) | |
| 271-381, gnl|mm7|chr11 (59914549-59914715) | |
| 271-381, gnl|Mm7|chr11 (59914689-59914579) | |
| 271-381, gnl|monDom2|scaffold_193 (203446-203615) | |
| 271-381, gnl|oryCun1|scaffold_204258 (40108-40272) | |
| 271-381, gnl|panTro1|chr19 (17514848-17515014) | |
| 271-381, gnl|rheMac2|chr16 (17168127-17168293) | |
| 271-381, gnl|rn3|chr10 (46170279-46170444) | |
| 271-381, gnl|tetNig1|chrUn_random (4484035-4484196) | |
| 271-381, gnl|xenTro1|scaffold_142 (906689-906508) | |
| 518-732, gnl|bosTau2|chr19 (26504059-26504273) | |
| 518-732, gnl|Hg17|chr17 (17109030-17108810) | |
| 518-732, gnl|Mm7|chr11 (59909580-59909364) | |
| 846-1021, gnl|bosTau2|chr19 (26507924-26508099) | |
| 846-1021, gnl|canFam2|chr5 (45159246-45159065) | |
| 846-1021, gnl|danRer3|chrNA (186218057-186218238) | |
| 846-1021, gnl|dasNov1|scaffold_31463 (5169-5350) | |
| 846-1021, gnl|echTel1|scaffold_285805 (98603-98776) | |
| 846-1021, gnl|fr1|chrUn (245057342-245057523) | |
| 846-1021, gnl|galGal2|chr14 (6851291-6851472) | |
| 846-1021, gnl|hg17|chr17 (17104341-17104522) | |
| 846-1021, gnl|Hg17|chr17 (17104515-17104340) | |
| 846-1021, gnl|loxAfr1|scaffold_18388 (10862-10681) | |
| 846-1021, gnl|mm7|chr11 (59905821-59906002) | |
| 846-1021, gnl|Mm7|chr11 (59905995-59905820) | |
| 846-1021, gnl|monDom2|scaffold_193 (187859-188040) | |
| 846-1021, gnl|oryCun1|scaffold_202842 (78514-78348) | |
| 846-1021, gnl|panTro1|chr19 (17504226-17504407) | |
| 846-1021, gnl|rheMac2|chr16 (17155402-17155583) | |
| 846-1021, gnl|rn3|chr10 (46162147-46162328) | |
| 846-1021, gnl|tetNig1|chrUn_random (4482152-4482305) | |
| 846-1021, gnl|xenTro1|scaffold_142 (910081-909902) | |
| 1108-1222, gnl|bosTau2|chr19 (26512271-26512385) | |
| 1108-1222, gnl|canFam2|chr5 (45168160-45167978) | |
| 1108-1222, gnl|danRer3|chrNA (186217152-186217347) | |
| 1108-1222, gnl|dasNov1|scaffold_41445 (2323-2144) | |
| 1108-1222, gnl|echTel1|scaffold_207957 (6413-6597) | |
| 1108-1222, gnl|fr1|chrUn (245056836-245057004) | |
| 1108-1222, gnl|galGal2|chr14 (6847535-6847708) | |
| 1108-1222, gnl|hg17|chr17 (17092947-17093139) | |
| 1108-1222, gnl|Hg17|chr17 (17093079-17092965) | |
| 1108-1222, gnl|loxAfr1|scaffold_18388 (25980-25796) | |
| 1108-1222, gnl|mm7|chr11 (59901533-59901718) | |
| 1108-1222, gnl|Mm7|chr11 (59901664-59901550) | |
| 1108-1222, gnl|monDom2|scaffold_193 (185125-185297) | |
| 1108-1222, gnl|oryCun1|scaffold_124469 (3948-3815) | |
| 1108-1222, gnl|panTro1|chr19 (17492881-17493075) | |
| 1108-1222, gnl|rheMac2|chr16 (17144476-17144669) | |
| 1108-1222, gnl|rn3|chr10 (46156270-46156431) | |
| 1108-1222, gnl|xenTro1|scaffold_142 (911052-910887) | |
| 1302-1611, gnl|bosTau2|chr19 (26513584-26513901) | |
| 1302-1611, gnl|Hg17|chr17 (17091192-17090873) | |
| 1302-1611, gnl|Mm7|chr11 (59899655-59899349) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| elu (0.770713) | |
| col (0.585023) | |
| pla (0.534688) | |
| cly (0.482567) | |
| mas (0.42061) | |
| eye (0.341006) | |
| cga (0.279096) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| col (0.585023) | |
| pla (0.534688) | |
| cly (0.482567) | |
| mas (0.42061) | |
| eye (0.341006) | |
| cga (0.279096) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| eje (0.0988338) |