Non-Coding RNA Search

Ss1.1-Thy1-THY010063C04.5

Sequence:


               
               CCGACCCCGCCCCCGCGCCCCGGGTGGCTCCCGGCGGTCCCTCCCACCTCCTAGCCTAGG
CCTCCCCGGCGCGGCGCACTCCCCGCCGGCCGCAGCCTGACACGCCGCGCGGCCCCCCAG
TCTCCCCGGCCGCCTCCCCCAGGCATGGCACAGGGCCTCGCCTCACTATGGCAGCAGCAC
GGCACAGCACGCTCGACTTCATGCTCGGCGCCAAAGCTGATGGTGAGACCATTCTGAAAG
GCCTCCAGTCCATTTTCCAGGAGCAGGGGATGACAGAGTCGGTGCACACCTGGCAGGATC
ATGGCTATTTAGCGACCTACATCAACAAAAACGGCAGCTTTGCCAATTTGAGAATTTATC
CACATGGATTGGTGTTGCTGGACCTTCAGAGTTACGACGGTGATGCACAAGGCAAAGAAG
TTGACAGTCTTTTGAACAAAGTAGAAGAAAGAATGAAAGAACTGAGTCAGGACAGTACTG
AGCGAGTGAAGCGATTACCACCCATCGTTCGAGGAGGGGCCATCGACAGATACTGGCCCA
CTGCCGATGGCCGCCTGGTGGAGTACGACATAGATGAGGTGGTATATGATGAAGACTCGC
CTTACCAGAACATTAAAATTTTACACTCGAAACAGTTTGGAAATATCCTCATCCTCAGTG
GGGATGTTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGACCCCGCCCCCGCGCCCCGGGTGGCTCCCGGCGGTCCCTCCCACCTCCTAGCCTAGG
CCTCCCCGGCGCGGCGCACTCCCCGCCGGCCGCAGCCTGACACGCCGCGCGGCCCCCCAG
TCTCCCCGGCCGCCTCCCCCAGGCATGGCACAGGGCCTCGCCTCACTATGGCAGCAGCAC
GGCACAGCACGCTCGACTTCATGCTCGGCGCCAAAGCTGATGGTGAGACCATTCTGAAAG
GCCTCCAGTCCATTTTCCAGGAGCAGGGGATGACAGAGTCGGTGCACACCTGGCAGGATC
ATGGCTATTTAGCGACCTACATCAACAAAAACGGCAGCTTTGCCAATTTGAGAATTTATC
CACATGGATTGGTGTTGCTGGACCTTCAGAGTTACGACGGTGATGCACAAGGCAAAGAAG
TTGACAGTCTTTTGAACAAAGTAGAAGAAAGAATGAAAGAACTGAGTCAGGACAGTACTG
AGCGAGTGAAGCGATTACCACCCATCGTTCGAGGAGGGGCCATCGACAGATACTGGCCCA
CTGCCGATGGCCGCCTGGTGGAGTACGACATAGATGAGGTGGTATATGATGAAGACTCGC
CTTACCAGAACATTAAAATTTTACACTCGAAACAGTTTGGAAATATCCTCATCCTCAGTG
GGGATGTTAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55627984|ref|XP_518917.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627984|ref|XP_518917.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               470-589, - strand, RNAz p=0.582811

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-589, - strand, RNAz p=0.582811

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               81-672, gnl|bosTau2|chr5 (16505002-16504412)
               

               
               81-672, gnl|Hg17|chr1 (157677751-157678349)
               

               
               81-672, gnl|Mm7|chrX (100468112-100468710)
               


               
               92-669, gnl|bosTau2|chr4 (50172726-50172149)
               

               
               92-669, gnl|Hg17|chr1 (157677768-157678346)
               

               
               92-669, gnl|Mm7|chrX (100468132-100468707)
               


               
               314-645, gnl|bosTau2|chr28 (34852167-34852487)
               

               
               314-645, gnl|Hg17|chr1 (157677996-157678305)
               

               
               314-645, gnl|Mm7|chrX (58171122-58170795)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               81-672, gnl|bosTau2|chr5 (16505002-16504412)
               

               
               81-672, gnl|Hg17|chr1 (157677751-157678349)
               

               
               81-672, gnl|Mm7|chrX (100468112-100468710)
               


               
               92-669, gnl|bosTau2|chr4 (50172726-50172149)
               

               
               92-669, gnl|Hg17|chr1 (157677768-157678346)
               

               
               92-669, gnl|Mm7|chrX (100468132-100468707)
               


               
               314-645, gnl|bosTau2|chr28 (34852167-34852487)
               

               
               314-645, gnl|Hg17|chr1 (157677996-157678305)
               

               
               314-645, gnl|Mm7|chrX (58171122-58170795)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pgl (0.236967)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	81-672, gnl\|bosTau2\|chr5 (16505002-16504412)
	81-672, gnl\|Hg17\|chr1 (157677751-157678349)
	81-672, gnl\|Mm7\|chrX (100468112-100468710)

	92-669, gnl\|bosTau2\|chr4 (50172726-50172149)
	92-669, gnl\|Hg17\|chr1 (157677768-157678346)
	92-669, gnl\|Mm7\|chrX (100468132-100468707)

	314-645, gnl\|bosTau2\|chr28 (34852167-34852487)
	314-645, gnl\|Hg17\|chr1 (157677996-157678305)
	314-645, gnl\|Mm7\|chrX (58171122-58170795)