Ss1.1-Thy1-THY010063C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTGATGCTGACGCCCGGTATTCGCCATGGAGCTGGCGCAGCGGAGCTGTCCCGTGCCG TTGCTACTGCTGCTTCTGGGCCTGAGCACCGGAGCAGTCCTCAACTGGTCCACAGAGGAA GGCAAGGAAGCATGGGATTATGTGACTGTCCGGAAAGATGCCCACATGTTCTGGTGGCTC TATTATGCCACCAACCCCTGCAAGAACTTCACAGAACTGCCCCTGGTCATGTGGCTTCAG GGCGGTCCGGGTGGTTCCAGCACTGGATTCGGGAACTTTGAGGAAATCGGGCCCCTTGAC AGTGATCTCAAACCACGGAGAACTACTTGGCTTCAGGCAGCCAGTCTCCTGTTTGTGGAT AACCCTGTGGGCACTGGGTTCAGTTACGTGAACAGGAGTAATGCCTACGCCAAAGACCTG GCCACGGTGGCATCAGACATGATGGTGCTCCTGAAGACCTTCTTTGATCGCCACAAAGAA TTCCAGACGATTCCATTCTACATTTTCTCAGAGTCCTATGGAGGAAAAATGGCTGCGGGC ATTGCTCTAGAACTTCACAAGGCCATTCAGCAAGGGACCATCCAGTGCAACTTTGCCGGC GTTGCTTTAGGTGACTCCTGGATCTCTCCCCTTGATTCGGTGGTCTCCTGGGGGCCTTAC CTGTACAGCATGTCTCTTCTCGATGACCAAGGTCTGGCAGAGGTGTCTCAGGTTGCAGAG CAAGTCTTGGATGCCATCAACAAGGGACTCTACAGAGAGGCCACCGACCTGTGGGGGAAA GCCGAAATGGTTGTCGAACAGAACACAGATGGGGTGAACTTCTATAACATCTTAACGAAG AGCTCCCCCATGTCTGCAGTGGAGTCGAGTCTAGAATTCACCCAGAGCCACCTAGTTCGT CTTTTCCAGCGCCACGTGAGACACCTACAACAGAATGCCTTGAGTCAGCTCATGAATGGG CCCATCAGAAAGAAGCTCAAAATCATTCCTGAAGACTGCTTCTGGGGAGGCCAGGCTACC AATGTGTTTCTGAACATGGAGGGGGACTTCATGAAGCCGGTCATCAGCATTGTAGACGAG TTGCTAGAAGCCGGGGTCAACGTGACCGTGTATAACGGACAGCTCGACCTCATCGTGGAC ACCATGGGTCAGGAGGCCTGGTTACGAAAACTGAAGTGGGCAGAGCTGCCCAAATTCAAT CAGCTGAGATGGAAGCCGCTGTACAGTGACCCTAAGTCTTCGGAAACATCTGCTTTTGTC AAGTCCTACAAGAACCTGGCTTTCTACTGGATTCTCAGAGCTGGGCACATGGTTCCCTCC GACCAAGGAGACATGGCTCTGAAGATGTTGAGGCTGGTGACTCAGCAAGAAGAGGGGGGC CCAGGCTGGAGGTGAGCCTCTTGGTCTCGGGAAGCATCCTTCTCCCTTTGAATCGGACTT GGGGGAAGAACCTGACCTTGGCTGTGATTGTGAAGGTTATCATCAGCTCCCACAGAGAAC AAAATTGTTGCCTCTGTGGCAACTTGGAAATCATTTCTGTTTCTGAAAACTAAGGGTTTT TTTTTTTTTTTTTTTTTTTTTTTTCCAACTGGTTTTGTTTTAATCAGAATGAAGGGCTGA AATAGATGAACATTTTCTCTTTACAAAAGCCAATTATGTGATTTATAGAAAAAAGGAAAA CACAGGTAACCAAAGAACAAATGAACACCCACAGGCTCCCTTTCCAGGGATAAGCACTGT TACCACTTTAGTATATATCCTTGCAAATCTTTTTTGTTGCTATATATACATATCTATTTT TTACAAAAACGGAGTCATTGCTATGTTATTTTACGGTCTTTCATTTTTCACTCATCCCTA TGTCCTGAACACCTTTTCATGTCAATAAATGTTCTTCTATAGCAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTGATGCTGACGCCCGGTATTCGCCATGGAGCTGGCGCAGCGGAGCTGTCCCGTGCCG TTGCTACTGCTGCTTCTGGGCCTGAGCACCGGAGCAGTCCTCAACTGGTCCACAGAGGAA GGCAAGGAAGCATGGGATTATGTGACTGTCCGGAAAGATGCCCACATGTTCTGGTGGCTC TATTATGCCACCAACCCCTGCAAGAACTTCACAGAACTGCCCCTGGTCATGTGGCTTCAG GGCGGTCCGGGTGGTTCCAGCACTGGATTCGGGAACTTTGAGGAAATCGGGCCCCTTGAC AGTGATCTCAAACCACGGAGAACTACTTGGCTTCAGGCAGCCAGTCTCCTGTTTGTGGAT AACCCTGTGGGCACTGGGTTCAGTTACGTGAACAGGAGTAATGCCTACGCCAAAGACCTG GCCACGGTGGCATCAGACATGATGGTGCTCCTGAAGACCTTCTTTGATCGCCACAAAGAA TTCCAGACGATTCCATTCTACATTTTCTCAGAGTCCTATGGAGGAAAAATGGCTGCGGGC ATTGCTCTAGAACTTCACAAGGCCATTCAGCAAGGGACCATCCAGTGCAACTTTGCCGGC GTTGCTTTAGGTGACTCCTGGATCTCTCCCCTTGATTCGGTGGTCTCCTGGGGGCCTTAC CTGTACAGCATGTCTCTTCTCGATGACCAAGGTCTGGCAGAGGTGTCTCAGGTTGCAGAG CAAGTCTTGGATGCCATCAACAAGGGACTCTACAGAGAGGCCACCGACCTGTGGGGGAAA GCCGAAATGGTTGTCGAACAGAACACAGATGGGGTGAACTTCTATAACATCTTAACGAAG AGCTCCCCCATGTCTGCAGTGGAGTCGAGTCTAGAATTCACCCAGAGCCACCTAGTTCGT CTTTTCCAGCGCCACGTGAGACACCTACAACAGAATGCCTTGAGTCAGCTCATGAATGGG CCCATCAGAAAGAAGCTCAAAATCATTCCTGAAGACTGCTTCTGGGGAGGCCAGGCTACC AATGTGTTTCTGAACATGGAGGGGGACTTCATGAAGCCGGTCATCAGCATTGTAGACGAG TTGCTAGAAGCCGGGGTCAACGTGACCGTGTATAACGGACAGCTCGACCTCATCGTGGAC ACCATGGGTCAGGAGGCCTGGTTACGAAAACTGAAGTGGGCAGAGCTGCCCAAATTCAAT CAGCTGAGATGGAAGCCGCTGTACAGTGACCCTAAGTCTTCGGAAACATCTGCTTTTGTC AAGTCCTACAAGAACCTGGCTTTCTACTGGATTCTCAGAGCTGGGCACATGGTTCCCTCC GACCAAGGAGACATGGCTCTGAAGATGTTGAGGCTGGTGACTCAGCAAGAAGAGGGGGGC CCAGGCTGGAGGTGAGCCTCTTGGTCTCGGGAAGCATCCTTCTCCCTTTGAATCGGACTT GGGGGAAGAACCTGACCTTGGCTGTGATTGTGAAGGTTATCATCAGCTCCCACAGAGAAC AAAATTGTTGCCTCTGTGGCAACTTGGAAATCATTTCTGTTTCTGAAAACTAAGGGTTTT TTTTTTTTTTTTTTTTTTTTTTTTCCAACTGGTTTTGTTTTAATCAGAATGAAGGGCTGA AATAGATGAACATTTTCTCTTTACAAAAGCCAATTATGTGATTTATAGAAAAAAGGAAAA CACAGGTAACCAAAGAACAAATGAACACCCACAGGCTCCCTTTCCAGGGATAAGCACTGT TACCACTTTAGTATATATCCTTGCAAATCTTTTTTGTTGCTATATATACATATCTATTTT TTACAAAAACGGAGTCATTGCTATGTTATTTTACGGTCTTTCATTTTTCACTCATCCCTA TGTCCTGAACACCTTTTCATGTCAATAAATGTTCTTCTATAGCAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 91-241, - strand, RNAz p=0.982255 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 91-241, - strand, RNAz p=0.982255 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 91-241, gnl|bosTau2|chr19 (2826303-2826153) | |
| 91-241, gnl|Hg17|chr17 (52413441-52413591) | |
| 91-241, gnl|Mm7|chr11 (89061594-89061444) | |
| 330-486, gnl|bosTau2|chr19 (2813211-2813055) | |
| 330-486, gnl|Hg17|chr17 (52420054-52420210) | |
| 330-486, gnl|Mm7|chr11 (89053570-89053414) | |
| 672-801, gnl|bosTau2|chr19 (2802767-2802638) | |
| 672-801, gnl|Hg17|chr17 (52427866-52427995) | |
| 672-801, gnl|Mm7|chr11 (89044991-89044862) | |
| 893-1010, gnl|bosTau2|chr19 (2801197-2801080) | |
| 893-1010, gnl|Hg17|chr17 (52430742-52430859) | |
| 893-1010, gnl|Mm7|chr11 (89042603-89042486) | |
| 1147-1313, gnl|bosTau2|chr19 (2797678-2797512) | |
| 1147-1313, gnl|canFam2|chr9 (35122536-35122744) | |
| 1147-1313, gnl|danRer3|chrNA (150845632-150845446) | |
| 1147-1313, gnl|echTel1|scaffold_247169 (7308-7115) | |
| 1147-1313, gnl|fr1|chrUn (143598129-143598323) | |
| 1147-1313, gnl|galGal2|chr18 (6104529-6104727) | |
| 1147-1313, gnl|hg17|chr17 (52434363-52434564) | |
| 1147-1313, gnl|Hg17|chr17 (52434377-52434543) | |
| 1147-1313, gnl|loxAfr1|scaffold_2731 (58323-58528) | |
| 1147-1313, gnl|mm7|chr11 (89038384-89038181) | |
| 1147-1313, gnl|Mm7|chr11 (89038368-89038202) | |
| 1147-1313, gnl|monDom2|scaffold_56 (6740476-6740267) | |
| 1147-1313, gnl|oryCun1|scaffold_194782 (67157-67368) | |
| 1147-1313, gnl|panTro1|chr19_random (38167576-38167777) | |
| 1147-1313, gnl|rheMac2|chr16 (41219573-41219774) | |
| 1147-1313, gnl|rn3|chr10 (77366612-77366411) | |
| 1147-1313, gnl|tetNig1|chrUn_random (37848864-37848692) | |
| 1410-1551, gnl|bosTau2|chr19 (2796435-2796296) | |
| 1410-1551, gnl|Hg17|chr17 (52438667-52438793) | |
| 1410-1551, gnl|Mm7|chr11 (89033653-89033517) | |
| 1577-1904, gnl|bosTau2|chr19 (2796296-2795973) | |
| 1577-1904, gnl|Hg17|chr17 (52438793-52439121) | |
| 1577-1904, gnl|Mm7|chr11 (89033517-89033065) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-241, gnl|bosTau2|chr19 (2826303-2826153) | |
| 91-241, gnl|Hg17|chr17 (52413441-52413591) | |
| 91-241, gnl|Mm7|chr11 (89061594-89061444) | |
| 330-486, gnl|bosTau2|chr19 (2813211-2813055) | |
| 330-486, gnl|Hg17|chr17 (52420054-52420210) | |
| 330-486, gnl|Mm7|chr11 (89053570-89053414) | |
| 672-801, gnl|bosTau2|chr19 (2802767-2802638) | |
| 672-801, gnl|Hg17|chr17 (52427866-52427995) | |
| 672-801, gnl|Mm7|chr11 (89044991-89044862) | |
| 893-1010, gnl|bosTau2|chr19 (2801197-2801080) | |
| 893-1010, gnl|Hg17|chr17 (52430742-52430859) | |
| 893-1010, gnl|Mm7|chr11 (89042603-89042486) | |
| 1147-1313, gnl|bosTau2|chr19 (2797678-2797512) | |
| 1147-1313, gnl|canFam2|chr9 (35122536-35122744) | |
| 1147-1313, gnl|danRer3|chrNA (150845632-150845446) | |
| 1147-1313, gnl|echTel1|scaffold_247169 (7308-7115) | |
| 1147-1313, gnl|fr1|chrUn (143598129-143598323) | |
| 1147-1313, gnl|galGal2|chr18 (6104529-6104727) | |
| 1147-1313, gnl|hg17|chr17 (52434363-52434564) | |
| 1147-1313, gnl|Hg17|chr17 (52434377-52434543) | |
| 1147-1313, gnl|loxAfr1|scaffold_2731 (58323-58528) | |
| 1147-1313, gnl|mm7|chr11 (89038384-89038181) | |
| 1147-1313, gnl|Mm7|chr11 (89038368-89038202) | |
| 1147-1313, gnl|monDom2|scaffold_56 (6740476-6740267) | |
| 1147-1313, gnl|oryCun1|scaffold_194782 (67157-67368) | |
| 1147-1313, gnl|panTro1|chr19_random (38167576-38167777) | |
| 1147-1313, gnl|rheMac2|chr16 (41219573-41219774) | |
| 1147-1313, gnl|rn3|chr10 (77366612-77366411) | |
| 1147-1313, gnl|tetNig1|chrUn_random (37848864-37848692) | |
| 1410-1551, gnl|bosTau2|chr19 (2796435-2796296) | |
| 1410-1551, gnl|Hg17|chr17 (52438667-52438793) | |
| 1410-1551, gnl|Mm7|chr11 (89033653-89033517) | |
| 1577-1904, gnl|bosTau2|chr19 (2796296-2795973) | |
| 1577-1904, gnl|Hg17|chr17 (52438793-52439121) | |
| 1577-1904, gnl|Mm7|chr11 (89033517-89033065) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| amn (0.835422) | |
| ill (0.351185) | |
| jca (0.34188) | |
| nje (0.33184) | |
| cty (0.31224) | |
| cag (0.302389) | |
| pla (0.267344) | |
| ute (0.265569) | |
| cly (0.241284) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| fco (0.157208) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| ill (0.351185) | |
| jca (0.34188) | |
| nje (0.33184) | |
| cty (0.31224) | |
| cag (0.302389) | |
| pla (0.267344) | |
| ute (0.265569) | |
| cly (0.241284) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| fco (0.157208) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ova (0.129132) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jej (0.0989218) | |
| eje (0.0988338) |