Ss1.1-Thy1-THY010063D10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTACCGCGGTGATGGGGCGCCTTTATTTGGGGCTCCTCTGAGATACAGCTGACACCC GGGGGGGGCTGCCCCCTCCTCTACCCCGAGGACAGGCCTGGGGGCTGAGGGGCCCCAGGA TGGCTGAGGGTGGCGGAAGTCCCCCAGGCGCTTGGGCCCGCGCCGCCGGGAGCTCAGGCC TCGGCCTTCGGGCCGCGTGCTGTCCACCGTGTCTCACGGGCCGACAGGGCAGAACCACGG CGTACTGTCCGCAGCTCAGAGTTGAGCCACCGCTGGGCCATCAGAAATGTGTCCTGGGAG GCGGGCCCAACAGCGTGGCTGCCTCGGTCAGCGGAGCCCAACGGGGGTCTCGTCGAGGAT CCTCTGCGCGATGGAGGAGAGCACGGGGAAGGCAGGGCTGTCCGGGAAGCCGCGCGCCAA GTCGCGGCCCTCCTCCAGGCTCCTGGCGAGCTCAGGATCCAGGGGCACGGAGCCCAGGAA GGGCACTCCGGTGTGTCTGGCCAGCTCCTCTCCGCCTCCCCGGGAGAAGACGTGGGTGCA CTCGGCGCAGTGTGGGCAGACGAAGCCGCTCATGTTCTCCACGAGCCCGATGACCCGCAG CCCCACCTTCCTACAGAAGGTCAGCTCCCGTCTCACGTCCCCCACAGACACGGCCTGGGG CGTGGTGACCACGAGGGCCCCCAGGGGGCCGTAGGGGCGCAAGGCGTCCACGGCGGCCAT GTGCTCATCCGAGGTCCCAGGGGGCGTGTCCACAACCAGATAGTCCAGCGGCCCCCAGGC CACGTCAGACACAAACTGCTTTATCAGCGCGTTCTTCTTGGGGCCTCTCCACACCACGGC CTCGTCCGGCTTCTCCAGCAGGAAGCCCACTGACATGAGGGAGATGCCCTGCTCCTGGTC CACGAAGACCGGCAACCAGCCCCTGTCGCACTGATGCACGGCCCTGCCCTGCACCCGGAG CATGCGGGGGATGCTGGGGCCGCACAGGTCCACGTCGAGGAGCCCCACCTTCTTGCCCGT GTGGCGCAGGGCCAGGGCCAGCTCCGTGGAGATGGTGCTTTTCCCGACACCCCCCTTTCC TGAGAGGACAAGGATGATGTGCCGGACGCCAGCCAGGTTTCCAGGCTCAGCCGCCGCCTC CATCCTGACCGGTTTGCCGCGCGTGAGGACAAGGATGATGTGCCGGACGCCGGCCAGGTT TCCAGGCTCAGCCGCCGCCTCCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTACCGCGGTGATGGGGCGCCTTTATTTGGGGCTCCTCTGAGATACAGCTGACACCC GGGGGGGGCTGCCCCCTCCTCTACCCCGAGGACAGGCCTGGGGGCTGAGGGGCCCCAGGA TGGCTGAGGGTGGCGGAAGTCCCCCAGGCGCTTGGGCCCGCGCCGCCGGGAGCTCAGGCC TCGGCCTTCGGGCCGCGTGCTGTCCACCGTGTCTCACGGGCCGACAGGGCAGAACCACGG CGTACTGTCCGCAGCTCAGAGTTGAGCCACCGCTGGGCCATCAGAAATGTGTCCTGGGAG GCGGGCCCAACAGCGTGGCTGCCTCGGTCAGCGGAGCCCAACGGGGGTCTCGTCGAGGAT CCTCTGCGCGATGGAGGAGAGCACGGGGAAGGCAGGGCTGTCCGGGAAGCCGCGCGCCAA GTCGCGGCCCTCCTCCAGGCTCCTGGCGAGCTCAGGATCCAGGGGCACGGAGCCCAGGAA GGGCACTCCGGTGTGTCTGGCCAGCTCCTCTCCGCCTCCCCGGGAGAAGACGTGGGTGCA CTCGGCGCAGTGTGGGCAGACGAAGCCGCTCATGTTCTCCACGAGCCCGATGACCCGCAG CCCCACCTTCCTACAGAAGGTCAGCTCCCGTCTCACGTCCCCCACAGACACGGCCTGGGG CGTGGTGACCACGAGGGCCCCCAGGGGGCCGTAGGGGCGCAAGGCGTCCACGGCGGCCAT GTGCTCATCCGAGGTCCCAGGGGGCGTGTCCACAACCAGATAGTCCAGCGGCCCCCAGGC CACGTCAGACACAAACTGCTTTATCAGCGCGTTCTTCTTGGGGCCTCTCCACACCACGGC CTCGTCCGGCTTCTCCAGCAGGAAGCCCACTGACATGAGGGAGATGCCCTGCTCCTGGTC CACGAAGACCGGCAACCAGCCCCTGTCGCACTGATGCACGGCCCTGCCCTGCACCCGGAG CATGCGGGGGATGCTGGGGCCGCACAGGTCCACGTCGAGGAGCCCCACCTTCTTGCCCGT GTGGCGCAGGGCCAGGGCCAGCTCCGTGGAGATGGTGCTTTTCCCGACACCCCCCTTTCC TGAGAGGACAAGGATGATGTGCCGGACGCCAGCCAGGTTTCCAGGCTCAGCCGCCGCCTC CATCCTGACCGGTTTGCCGCGCGTGAGGACAAGGATGATGTGCCGGACGCCGGCCAGGTT TCCAGGCTCAGCCGCCGCCTCCAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 321-483, gnl|bosTau2|chr25 (2837302-2837464) | |
| 321-483, gnl|canFam2|chr6 (42160900-42160771) | |
| 321-483, gnl|danRer3|chrNA (234883208-234883083) | |
| 321-483, gnl|dasNov1|scaffold_172837 (3780-3679) | |
| 321-483, gnl|echTel1|scaffold_262504 (4495-4359) | |
| 321-483, gnl|fr1|chrUn (21942172-21942085) | |
| 321-483, gnl|galGal2|chr14 (1890641-1890770) | |
| 321-483, gnl|hg17|chr16 (1778564-1778694) | |
| 321-483, gnl|Hg17|chr16 (1778723-1778564) | |
| 321-483, gnl|loxAfr1|scaffold_86839 (5005-5135) | |
| 321-483, gnl|mm7|chr17 (23066475-23066349) | |
| 321-483, gnl|Mm7|chr17 (23066321-23066473) | |
| 321-483, gnl|monDom2|scaffold_5 (121955478-121955348) | |
| 321-483, gnl|oryCun1|scaffold_141449 (6200-6089) | |
| 321-483, gnl|panTro1|chr18 (1863047-1863177) | |
| 321-483, gnl|rheMac2|chr20 (1773959-1774089) | |
| 321-483, gnl|rn3|chr10 (14132007-14131882) | |
| 321-483, gnl|tetNig1|chr2 (5008988-5009093) | |
| 321-483, gnl|xenTro1|scaffold_12 (3463232-3463102) | |
| 547-658, gnl|bosTau2|chr25 (2837927-2838038) | |
| 547-658, gnl|canFam2|chr6 (42161308-42161182) | |
| 547-658, gnl|danRer3|chrNA (234884654-234884533) | |
| 547-658, gnl|dasNov1|scaffold_13133 (7936-8054) | |
| 547-658, gnl|echTel1|scaffold_262504 (4874-4745) | |
| 547-658, gnl|fr1|chrUn (21942789-21942658) | |
| 547-658, gnl|galGal2|chr14 (1889676-1889799) | |
| 547-658, gnl|hg17|chr16 (1777936-1778062) | |
| 547-658, gnl|Hg17|chr16 (1778050-1777940) | |
| 547-658, gnl|loxAfr1|scaffold_86839 (4410-4538) | |
| 547-658, gnl|mm7|chr17 (23067400-23067274) | |
| 547-658, gnl|Mm7|chr17 (23067284-23067395) | |
| 547-658, gnl|monDom2|scaffold_5 (121957827-121957701) | |
| 547-658, gnl|oryCun1|scaffold_141449 (6394-6278) | |
| 547-658, gnl|panTro1|chr18 (1862419-1862545) | |
| 547-658, gnl|rheMac2|chr20 (1773391-1773517) | |
| 547-658, gnl|rn3|chr10 (14132852-14132726) | |
| 547-658, gnl|tetNig1|chr2 (5008417-5008544) | |
| 547-658, gnl|xenTro1|scaffold_12 (3465986-3465869) | |
| 810-1010, gnl|bosTau2|chr25 (2838926-2839126) | |
| 810-1010, gnl|canFam2|chr6 (42162407-42162250) | |
| 810-1010, gnl|fr1|chrUn (21943361-21943183) | |
| 810-1010, gnl|galGal2|chr14 (1888861-1889024) | |
| 810-1010, gnl|hg17|chr16 (1776733-1776889) | |
| 810-1010, gnl|Hg17|chr16 (1776957-1776757) | |
| 810-1010, gnl|mm7|chr17 (23068801-23068645) | |
| 810-1010, gnl|Mm7|chr17 (23068575-23068775) | |
| 810-1010, gnl|monDom2|scaffold_5 (121960495-121960342) | |
| 810-1010, gnl|panTro1|chr18 (1861219-1861375) | |
| 810-1010, gnl|rheMac2|chr20 (1772160-1772316) | |
| 810-1010, gnl|rn3|chr10 (14134300-14134144) | |
| 810-1010, gnl|tetNig1|chr2 (5007857-5008005) | |
| 810-1010, gnl|xenTro1|scaffold_12 (3468457-3468266) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 321-483, gnl|bosTau2|chr25 (2837302-2837464) | |
| 321-483, gnl|canFam2|chr6 (42160900-42160771) | |
| 321-483, gnl|danRer3|chrNA (234883208-234883083) | |
| 321-483, gnl|dasNov1|scaffold_172837 (3780-3679) | |
| 321-483, gnl|echTel1|scaffold_262504 (4495-4359) | |
| 321-483, gnl|fr1|chrUn (21942172-21942085) | |
| 321-483, gnl|galGal2|chr14 (1890641-1890770) | |
| 321-483, gnl|hg17|chr16 (1778564-1778694) | |
| 321-483, gnl|Hg17|chr16 (1778723-1778564) | |
| 321-483, gnl|loxAfr1|scaffold_86839 (5005-5135) | |
| 321-483, gnl|mm7|chr17 (23066475-23066349) | |
| 321-483, gnl|Mm7|chr17 (23066321-23066473) | |
| 321-483, gnl|monDom2|scaffold_5 (121955478-121955348) | |
| 321-483, gnl|oryCun1|scaffold_141449 (6200-6089) | |
| 321-483, gnl|panTro1|chr18 (1863047-1863177) | |
| 321-483, gnl|rheMac2|chr20 (1773959-1774089) | |
| 321-483, gnl|rn3|chr10 (14132007-14131882) | |
| 321-483, gnl|tetNig1|chr2 (5008988-5009093) | |
| 321-483, gnl|xenTro1|scaffold_12 (3463232-3463102) | |
| 547-658, gnl|bosTau2|chr25 (2837927-2838038) | |
| 547-658, gnl|canFam2|chr6 (42161308-42161182) | |
| 547-658, gnl|danRer3|chrNA (234884654-234884533) | |
| 547-658, gnl|dasNov1|scaffold_13133 (7936-8054) | |
| 547-658, gnl|echTel1|scaffold_262504 (4874-4745) | |
| 547-658, gnl|fr1|chrUn (21942789-21942658) | |
| 547-658, gnl|galGal2|chr14 (1889676-1889799) | |
| 547-658, gnl|hg17|chr16 (1777936-1778062) | |
| 547-658, gnl|Hg17|chr16 (1778050-1777940) | |
| 547-658, gnl|loxAfr1|scaffold_86839 (4410-4538) | |
| 547-658, gnl|mm7|chr17 (23067400-23067274) | |
| 547-658, gnl|Mm7|chr17 (23067284-23067395) | |
| 547-658, gnl|monDom2|scaffold_5 (121957827-121957701) | |
| 547-658, gnl|oryCun1|scaffold_141449 (6394-6278) | |
| 547-658, gnl|panTro1|chr18 (1862419-1862545) | |
| 547-658, gnl|rheMac2|chr20 (1773391-1773517) | |
| 547-658, gnl|rn3|chr10 (14132852-14132726) | |
| 547-658, gnl|tetNig1|chr2 (5008417-5008544) | |
| 547-658, gnl|xenTro1|scaffold_12 (3465986-3465869) | |
| 810-1010, gnl|bosTau2|chr25 (2838926-2839126) | |
| 810-1010, gnl|canFam2|chr6 (42162407-42162250) | |
| 810-1010, gnl|fr1|chrUn (21943361-21943183) | |
| 810-1010, gnl|galGal2|chr14 (1888861-1889024) | |
| 810-1010, gnl|hg17|chr16 (1776733-1776889) | |
| 810-1010, gnl|Hg17|chr16 (1776957-1776757) | |
| 810-1010, gnl|mm7|chr17 (23068801-23068645) | |
| 810-1010, gnl|Mm7|chr17 (23068575-23068775) | |
| 810-1010, gnl|monDom2|scaffold_5 (121960495-121960342) | |
| 810-1010, gnl|panTro1|chr18 (1861219-1861375) | |
| 810-1010, gnl|rheMac2|chr20 (1772160-1772316) | |
| 810-1010, gnl|rn3|chr10 (14134300-14134144) | |
| 810-1010, gnl|tetNig1|chr2 (5007857-5008005) | |
| 810-1010, gnl|xenTro1|scaffold_12 (3468457-3468266) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fce (0.271592) | |
| cty (0.20816) | |
| col (0.195008) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| cty (0.20816) | |
| col (0.195008) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| jej (0.0989218) | |
| eje (0.0988338) |