Ss1.1-Thy1-THY010063E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAGGCACAGACTGTTCTGTGGTCCTTTCGCTGGTGACAGGGCCAGCTAAATGCTTCCTG GGAGTTGGCTCTACCCCAGTGCCCTCAGCAGCTCGGCCTTAAGTGAAAGAGACGCCTCCC CACCTGCGGATTAAGCCATGAGGCGGAGACGCGTGAACACAGACCTCGAGGAACTTCGGA AGCTGAGCTGGTCGGGGGTCCCGAAGCCCGTCCGTGCCGTCACGTGGAAGCTGCTCTCCG GTTACCTTCCGGCCAACGTGGACCGAAGACCGGCCACTCTCCAGAGAAAACAGAAAGAAT ATTTTGCTTTTATTGATCACTATTACGACTCTAGGAACGATGAAGTTCACCAAGATACCT ACAGACAGATCCACATAGACATTCCCCGCATGAGCCCCGAAGCGTTGGTCCTTCAGCCCA AGGTGACGGAGATCTTCGAACGGATATTGTTCATATGGGCCATACGCCACCCGGCCAGCG GCTACGTCCAGGGGATGAACGACCTGGTCATCCCGTTCTTCGTGGTCTTCCTCTGCGAAC ACACAGACGACGAGGACGTGGACACGGCCGACGTCTCCCGCGTGCCCGAGGACGTGCTGC GCAACGTGGAGGCCGACACGTACTGGTGCCTGAGCCGGCTGCTGGACGGCATCCAGGACA ACTACACCTTTGCCCAACCTGGGATCCAGATGAAGGTGAAAATGCTGGAGGAGCTGGTGC GGCGGATCGATGAGCAAGTGCATCGGCACCTGGACCAGCACGAGGTGCGGTACCTGCAGT TTGCCTTCCGCTGGATGAACAACCTGCTGATGCGGGAGGTGCCTCTGCGCTGTACCATCC GCCTGTGGGACACCTACCAGTCGGAACCCGAGGGCTTCGCGCATTTCCACCTGTACGTGT GCGCCGCGTTTCTCGTGAGATGGAGGAAAGAGATACTGGAAGAGAAGGACTTTCAAGAGC TGCTGCTCTTCCTCCAGAACCTGCCCACAGCCCACTGGGGCGACGAGGACATCAGCCTGC TGCTGGCCGAGGCCTACCGCCTCAAGTTTGCCTTCGCGGACGCCCCCAATCACTATAAGA AATGAGCCCGGCCCCTACGCACCGGCTGGCTGTAGGCCTGTGGCCGAGGAGAGGCCTTGC TGGAGCAGCTCACCAGGACGGGGCGCCAGGCGTGGCCCAGGGCCTGGCGAGGGCCGGGCA GCCTCTATTTTCTGAGATACCAAAGAGAGCCAGGACAGGGTCCCGCCGTGTGAGGCCGGG GAGTTCAGGCGTCCCCTCCTCTGACCCTGGAGCATCTTTGCCAAACGCCCTTGGGGAGGC CTGCTGTCCCGGTGCCCGGGCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAGGCACAGACTGTTCTGTGGTCCTTTCGCTGGTGACAGGGCCAGCTAAATGCTTCCTG GGAGTTGGCTCTACCCCAGTGCCCTCAGCAGCTCGGCCTTAAGTGAAAGAGACGCCTCCC CACCTGCGGATTAAGCCATGAGGCGGAGACGCGTGAACACAGACCTCGAGGAACTTCGGA AGCTGAGCTGGTCGGGGGTCCCGAAGCCCGTCCGTGCCGTCACGTGGAAGCTGCTCTCCG GTTACCTTCCGGCCAACGTGGACCGAAGACCGGCCACTCTCCAGAGAAAACAGAAAGAAT ATTTTGCTTTTATTGATCACTATTACGACTCTAGGAACGATGAAGTTCACCAAGATACCT ACAGACAGATCCACATAGACATTCCCCGCATGAGCCCCGAAGCGTTGGTCCTTCAGCCCA AGGTGACGGAGATCTTCGAACGGATATTGTTCATATGGGCCATACGCCACCCGGCCAGCG GCTACGTCCAGGGGATGAACGACCTGGTCATCCCGTTCTTCGTGGTCTTCCTCTGCGAAC ACACAGACGACGAGGACGTGGACACGGCCGACGTCTCCCGCGTGCCCGAGGACGTGCTGC GCAACGTGGAGGCCGACACGTACTGGTGCCTGAGCCGGCTGCTGGACGGCATCCAGGACA ACTACACCTTTGCCCAACCTGGGATCCAGATGAAGGTGAAAATGCTGGAGGAGCTGGTGC GGCGGATCGATGAGCAAGTGCATCGGCACCTGGACCAGCACGAGGTGCGGTACCTGCAGT TTGCCTTCCGCTGGATGAACAACCTGCTGATGCGGGAGGTGCCTCTGCGCTGTACCATCC GCCTGTGGGACACCTACCAGTCGGAACCCGAGGGCTTCGCGCATTTCCACCTGTACGTGT GCGCCGCGTTTCTCGTGAGATGGAGGAAAGAGATACTGGAAGAGAAGGACTTTCAAGAGC TGCTGCTCTTCCTCCAGAACCTGCCCACAGCCCACTGGGGCGACGAGGACATCAGCCTGC TGCTGGCCGAGGCCTACCGCCTCAAGTTTGCCTTCGCGGACGCCCCCAATCACTATAAGA AATGAGCCCGGCCCCTACGCACCGGCTGGCTGTAGGCCTGTGGCCGAGGAGAGGCCTTGC TGGAGCAGCTCACCAGGACGGGGCGCCAGGCGTGGCCCAGGGCCTGGCGAGGGCCGGGCA GCCTCTATTTTCTGAGATACCAAAGAGAGCCAGGACAGGGTCCCGCCGTGTGAGGCCGGG GAGTTCAGGCGTCCCCTCCTCTGACCCTGGAGCATCTTTGCCAAACGCCCTTGGGGAGGC CTGCTGTCCCGGTGCCCGGGCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 954-1072, - strand, RNAz p=0.728243 | |
| 954-1092, - strand, RNAz p=0.630827 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 954-1072, - strand, RNAz p=0.728243 | |
| 954-1092, - strand, RNAz p=0.630827 |
| Aligned organism(s): 92 entry(ies) | More info |
| Aligned organism(s): 92 entry(ies) | Help | Less info |
| 240-368, gnl|bosTau2|chr5 (73416946-73416818) | |
| 240-368, gnl|canFam2|chr10 (22481792-22481654) | |
| 240-368, gnl|danRer3|chr4 (24481351-24481194) | |
| 240-368, gnl|dasNov1|scaffold_6518 (22767-22900) | |
| 240-368, gnl|echTel1|scaffold_202102 (503-639) | |
| 240-368, gnl|fr1|chrUn (205616447-205616582) | |
| 240-368, gnl|hg17|chr22 (45607677-45607815) | |
| 240-368, gnl|Hg17|chr22 (45607681-45607809) | |
| 240-368, gnl|loxAfr1|scaffold_25204 (6284-6419) | |
| 240-368, gnl|mm7|chr15 (86382009-86382146) | |
| 240-368, gnl|Mm7|chr15 (86382012-86382140) | |
| 240-368, gnl|monDom2|scaffold_99 (201689-201826) | |
| 240-368, gnl|oryCun1|scaffold_119939 (4175-4037) | |
| 240-368, gnl|panTro1|chr23 (45937379-45937517) | |
| 240-368, gnl|rheMac2|chr10 (90917648-90917786) | |
| 240-368, gnl|rn3|chr7 (124330079-124330216) | |
| 240-368, gnl|tetNig1|chrUn_random (55748811-55748943) | |
| 240-368, gnl|xenTro1|scaffold_24 (1834435-1834573) | |
| 430-539, gnl|bosTau2|chr23 (10219611-10219720) | |
| 430-539, gnl|canFam2|chr12 (9327254-9327388) | |
| 430-539, gnl|danRer3|chrNA (38252774-38252899) | |
| 430-539, gnl|dasNov1|scaffold_3397 (40903-41037) | |
| 430-539, gnl|echTel1|scaffold_308369 (2066-1932) | |
| 430-539, gnl|fr1|chrUn (205620912-205621033) | |
| 430-539, gnl|galGal2|chr32 (836871-836999) | |
| 430-539, gnl|hg17|chr6 (37366996-37367130) | |
| 430-539, gnl|Hg17|chr6 (37366995-37367104) | |
| 430-539, gnl|loxAfr1|scaffold_25204 (11193-11327) | |
| 430-539, gnl|mm7|chr17 (27770943-27771077) | |
| 430-539, gnl|Mm7|chr17 (27770942-27771051) | |
| 430-539, gnl|monDom2|scaffold_42 (8949135-8949001) | |
| 430-539, gnl|oryCun1|scaffold_40826 (321-455) | |
| 430-539, gnl|panTro1|chr5 (37852608-37852742) | |
| 430-539, gnl|rheMac2|chr10 (90938772-90938894) | |
| 430-539, gnl|rn3|chr20 (7893974-7894108) | |
| 430-539, gnl|tetNig1|chrUn_random (90856718-90856597) | |
| 430-539, gnl|xenTro1|scaffold_163 (1434812-1434674) | |
| 544-657, gnl|bosTau2|chr5 (73358656-73358543) | |
| 544-657, gnl|canFam2|chr10 (22405753-22405634) | |
| 544-657, gnl|danRer3|chr4 (24428798-24428683) | |
| 544-657, gnl|dasNov1|scaffold_87011 (4735-4617) | |
| 544-657, gnl|echTel1|scaffold_29698 (5227-5103) | |
| 544-657, gnl|fr1|chrUn (205632535-205632649) | |
| 544-657, gnl|galGal2|chr1 (7882677-7882560) | |
| 544-657, gnl|hg17|chr22 (45690702-45690833) | |
| 544-657, gnl|Hg17|chr22 (45690704-45690815) | |
| 544-657, gnl|loxAfr1|scaffold_8172 (72871-72982) | |
| 544-657, gnl|mm7|chr15 (86434016-86434135) | |
| 544-657, gnl|Mm7|chr15 (86434016-86434129) | |
| 544-657, gnl|monDom2|scaffold_99 (314798-314928) | |
| 544-657, gnl|oryCun1|scaffold_176153 (7262-7143) | |
| 544-657, gnl|panTro1|chr23 (46020278-46020409) | |
| 544-657, gnl|rheMac2|chr4 (37085382-37085493) | |
| 544-657, gnl|rn3|chr7 (124375397-124375516) | |
| 544-657, gnl|tetNig1|chrUn_random (55765625-55765738) | |
| 732-860, gnl|bosTau2|chr23 (10241115-10241243) | |
| 732-860, gnl|canFam2|chr12 (9348841-9348993) | |
| 732-860, gnl|danRer3|chrNA (38293516-38293636) | |
| 732-860, gnl|dasNov1|scaffold_6518 (69182-69333) | |
| 732-860, gnl|echTel1|scaffold_29698 (2195-2054) | |
| 732-860, gnl|fr1|chrUn (205642133-205642271) | |
| 732-860, gnl|galGal2|chr32 (841449-841604) | |
| 732-860, gnl|hg17|chr6 (37392429-37392575) | |
| 732-860, gnl|Hg17|chr6 (37392456-37392584) | |
| 732-860, gnl|loxAfr1|scaffold_157947 (586-731) | |
| 732-860, gnl|mm7|chr17 (27792040-27792173) | |
| 732-860, gnl|Mm7|chr17 (27792054-27792182) | |
| 732-860, gnl|monDom2|scaffold_42 (8914978-8914832) | |
| 732-860, gnl|oryCun1|scaffold_173656 (57662-57509) | |
| 732-860, gnl|panTro1|chr5 (37878142-37878288) | |
| 732-860, gnl|rheMac2|chr4 (37089175-37089321) | |
| 732-860, gnl|rn3|chr20 (7913721-7913854) | |
| 732-860, gnl|tetNig1|chrUn_random (90856153-90856023) | |
| 732-860, gnl|xenTro1|scaffold_163 (1416384-1416258) | |
| 954-1092, gnl|bosTau2|chr5 (73261275-73261137) | |
| 954-1092, gnl|canFam2|chr10 (22249907-22249753) | |
| 954-1092, gnl|danRer3|chr4 (24275686-24275532) | |
| 954-1092, gnl|dasNov1|scaffold_25041 (46976-47108) | |
| 954-1092, gnl|echTel1|scaffold_104882 (4068-4216) | |
| 954-1092, gnl|fr1|chrUn (205656342-205656504) | |
| 954-1092, gnl|hg17|chr22 (45889646-45889802) | |
| 954-1092, gnl|Hg17|chr22 (45889657-45889796) | |
| 954-1092, gnl|loxAfr1|scaffold_12427 (23922-24060) | |
| 954-1092, gnl|mm7|chr15 (86579164-86579320) | |
| 954-1092, gnl|Mm7|chr15 (86579175-86579315) | |
| 954-1092, gnl|monDom2|scaffold_99 (507415-507587) | |
| 954-1092, gnl|oryCun1|scaffold_173656 (44388-44253) | |
| 954-1092, gnl|panTro1|chr23 (46222539-46222695) | |
| 954-1092, gnl|rheMac2|chr10 (91195406-91195562) | |
| 954-1092, gnl|rn3|chr7 (124525721-124525877) | |
| 954-1092, gnl|tetNig1|chrUn_random (55788955-55789114) | |
| 954-1092, gnl|xenTro1|scaffold_24 (2046968-2047111) |
| Aligned organism(s): 92 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 240-368, gnl|bosTau2|chr5 (73416946-73416818) | |
| 240-368, gnl|canFam2|chr10 (22481792-22481654) | |
| 240-368, gnl|danRer3|chr4 (24481351-24481194) | |
| 240-368, gnl|dasNov1|scaffold_6518 (22767-22900) | |
| 240-368, gnl|echTel1|scaffold_202102 (503-639) | |
| 240-368, gnl|fr1|chrUn (205616447-205616582) | |
| 240-368, gnl|hg17|chr22 (45607677-45607815) | |
| 240-368, gnl|Hg17|chr22 (45607681-45607809) | |
| 240-368, gnl|loxAfr1|scaffold_25204 (6284-6419) | |
| 240-368, gnl|mm7|chr15 (86382009-86382146) | |
| 240-368, gnl|Mm7|chr15 (86382012-86382140) | |
| 240-368, gnl|monDom2|scaffold_99 (201689-201826) | |
| 240-368, gnl|oryCun1|scaffold_119939 (4175-4037) | |
| 240-368, gnl|panTro1|chr23 (45937379-45937517) | |
| 240-368, gnl|rheMac2|chr10 (90917648-90917786) | |
| 240-368, gnl|rn3|chr7 (124330079-124330216) | |
| 240-368, gnl|tetNig1|chrUn_random (55748811-55748943) | |
| 240-368, gnl|xenTro1|scaffold_24 (1834435-1834573) | |
| 430-539, gnl|bosTau2|chr23 (10219611-10219720) | |
| 430-539, gnl|canFam2|chr12 (9327254-9327388) | |
| 430-539, gnl|danRer3|chrNA (38252774-38252899) | |
| 430-539, gnl|dasNov1|scaffold_3397 (40903-41037) | |
| 430-539, gnl|echTel1|scaffold_308369 (2066-1932) | |
| 430-539, gnl|fr1|chrUn (205620912-205621033) | |
| 430-539, gnl|galGal2|chr32 (836871-836999) | |
| 430-539, gnl|hg17|chr6 (37366996-37367130) | |
| 430-539, gnl|Hg17|chr6 (37366995-37367104) | |
| 430-539, gnl|loxAfr1|scaffold_25204 (11193-11327) | |
| 430-539, gnl|mm7|chr17 (27770943-27771077) | |
| 430-539, gnl|Mm7|chr17 (27770942-27771051) | |
| 430-539, gnl|monDom2|scaffold_42 (8949135-8949001) | |
| 430-539, gnl|oryCun1|scaffold_40826 (321-455) | |
| 430-539, gnl|panTro1|chr5 (37852608-37852742) | |
| 430-539, gnl|rheMac2|chr10 (90938772-90938894) | |
| 430-539, gnl|rn3|chr20 (7893974-7894108) | |
| 430-539, gnl|tetNig1|chrUn_random (90856718-90856597) | |
| 430-539, gnl|xenTro1|scaffold_163 (1434812-1434674) | |
| 544-657, gnl|bosTau2|chr5 (73358656-73358543) | |
| 544-657, gnl|canFam2|chr10 (22405753-22405634) | |
| 544-657, gnl|danRer3|chr4 (24428798-24428683) | |
| 544-657, gnl|dasNov1|scaffold_87011 (4735-4617) | |
| 544-657, gnl|echTel1|scaffold_29698 (5227-5103) | |
| 544-657, gnl|fr1|chrUn (205632535-205632649) | |
| 544-657, gnl|galGal2|chr1 (7882677-7882560) | |
| 544-657, gnl|hg17|chr22 (45690702-45690833) | |
| 544-657, gnl|Hg17|chr22 (45690704-45690815) | |
| 544-657, gnl|loxAfr1|scaffold_8172 (72871-72982) | |
| 544-657, gnl|mm7|chr15 (86434016-86434135) | |
| 544-657, gnl|Mm7|chr15 (86434016-86434129) | |
| 544-657, gnl|monDom2|scaffold_99 (314798-314928) | |
| 544-657, gnl|oryCun1|scaffold_176153 (7262-7143) | |
| 544-657, gnl|panTro1|chr23 (46020278-46020409) | |
| 544-657, gnl|rheMac2|chr4 (37085382-37085493) | |
| 544-657, gnl|rn3|chr7 (124375397-124375516) | |
| 544-657, gnl|tetNig1|chrUn_random (55765625-55765738) | |
| 732-860, gnl|bosTau2|chr23 (10241115-10241243) | |
| 732-860, gnl|canFam2|chr12 (9348841-9348993) | |
| 732-860, gnl|danRer3|chrNA (38293516-38293636) | |
| 732-860, gnl|dasNov1|scaffold_6518 (69182-69333) | |
| 732-860, gnl|echTel1|scaffold_29698 (2195-2054) | |
| 732-860, gnl|fr1|chrUn (205642133-205642271) | |
| 732-860, gnl|galGal2|chr32 (841449-841604) | |
| 732-860, gnl|hg17|chr6 (37392429-37392575) | |
| 732-860, gnl|Hg17|chr6 (37392456-37392584) | |
| 732-860, gnl|loxAfr1|scaffold_157947 (586-731) | |
| 732-860, gnl|mm7|chr17 (27792040-27792173) | |
| 732-860, gnl|Mm7|chr17 (27792054-27792182) | |
| 732-860, gnl|monDom2|scaffold_42 (8914978-8914832) | |
| 732-860, gnl|oryCun1|scaffold_173656 (57662-57509) | |
| 732-860, gnl|panTro1|chr5 (37878142-37878288) | |
| 732-860, gnl|rheMac2|chr4 (37089175-37089321) | |
| 732-860, gnl|rn3|chr20 (7913721-7913854) | |
| 732-860, gnl|tetNig1|chrUn_random (90856153-90856023) | |
| 732-860, gnl|xenTro1|scaffold_163 (1416384-1416258) | |
| 954-1092, gnl|bosTau2|chr5 (73261275-73261137) | |
| 954-1092, gnl|canFam2|chr10 (22249907-22249753) | |
| 954-1092, gnl|danRer3|chr4 (24275686-24275532) | |
| 954-1092, gnl|dasNov1|scaffold_25041 (46976-47108) | |
| 954-1092, gnl|echTel1|scaffold_104882 (4068-4216) | |
| 954-1092, gnl|fr1|chrUn (205656342-205656504) | |
| 954-1092, gnl|hg17|chr22 (45889646-45889802) | |
| 954-1092, gnl|Hg17|chr22 (45889657-45889796) | |
| 954-1092, gnl|loxAfr1|scaffold_12427 (23922-24060) | |
| 954-1092, gnl|mm7|chr15 (86579164-86579320) | |
| 954-1092, gnl|Mm7|chr15 (86579175-86579315) | |
| 954-1092, gnl|monDom2|scaffold_99 (507415-507587) | |
| 954-1092, gnl|oryCun1|scaffold_173656 (44388-44253) | |
| 954-1092, gnl|panTro1|chr23 (46222539-46222695) | |
| 954-1092, gnl|rheMac2|chr10 (91195406-91195562) | |
| 954-1092, gnl|rn3|chr7 (124525721-124525877) | |
| 954-1092, gnl|tetNig1|chrUn_random (55788955-55789114) | |
| 954-1092, gnl|xenTro1|scaffold_24 (2046968-2047111) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| eje (0.0988338) |