Non-Coding RNA Search

Ss1.1-Thy1-THY010063E06.5

Sequence:


               
               CAGCAGAGCCGAGCGGCCGCGGCGGCTTCCCTTTTCTCCACCAGCGAGCCCTGGAGTGCC
TCGGGGACCGGCCCTAAAAAGAGCAGGAAATCTTGTTTACCGCCCGGGGAGCAGAGCTGA
TCGAGCCTTTGTCTGGAAAGTCAGCATCTCTGACTGCAATGTGTTCCTGGTGACATTAGC
CTTGGGCAGACCGGCCGGAGAAGGGGATCGCCAGGTTCAGATCTGGTTTCAGAGGCGGAT
CGAGCGGGTGACTTTTGTGCATTCGTTTTAATTTTTGGAAATCTCTCTTTTTTTCCCTCC
CTCGCCCGCCGCCGGGCATGCCCTGATCTGGCGCCCGCTCCTACCGACCCGGGCTACCGA
ATAGAGCGGTTTCCAGCCGGTCTCCCTCCCTCCCCGCCTGACTTTGCAACACCGCGTTCC
AGGAGGATCGACCTCGGCAAGGAAGGAGACGGAGGAGCGGTGAACACCCGGACCCGAACC
TTGACATGCTCTCGGGCGGTGAGGAGGAAGCCAGGATCTGAGCGCACCGCCGGGGCTGCC
TCGCCCGCCGGCTCCGAGCGCGGGGCTCCAGGCGCCCTGCCCTGTGCCTGGGCGGCAGCG
CTGTTAGTCTGGGGGCGCCCTCCGCTTCCTGCCTTAGGGGTCCGCGGCCGGCAGGATCAT
GCTGCTGAAGGAGTACAGGATCTGCATGCCGCTCACCGTGGACGAGTATAAAATCGGACA
GCTGTACATGATCAGCAAGCACAGCCACGAACAGAGCGACCGTGGGGAAGGGGTGGAGGT
CGTCCAGAACGAGCCCTTCGAGGACCCTCACCATGGCAACGGACAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGAGCCGAGCGGCCGCGGCGGCTTCCCTTTTCTCCACCAGCGAGCCCTGGAGTGCC
TCGGGGACCGGCCCTAAAAAGAGCAGGAAATCTTGTTTACCGCCCGGGGAGCAGAGCTGA
TCGAGCCTTTGTCTGGAAAGTCAGCATCTCTGACTGCAATGTGTTCCTGGTGACATTAGC
CTTGGGCAGACCGGCCGGAGAAGGGGATCGCCAGGTTCAGATCTGGTTTCAGAGGCGGAT
CGAGCGGGTGACTTTTGTGCATTCGTTTTAATTTTTGGAAATCTCTCTTTTTTTCCCTCC
CTCGCCCGCCGCCGGGCATGCCCTGATCTGGCGCCCGCTCCTACCGACCCGGGCTACCGA
ATAGAGCGGTTTCCAGCCGGTCTCCCTCCCTCCCCGCCTGACTTTGCAACACCGCGTTCC
AGGAGGATCGACCTCGGCAAGGAAGGAGACGGAGGAGCGGTGAACACCCGGACCCGAACC
TTGACATGCTCTCGGGCGGTGAGGAGGAAGCCAGGATCTGAGCGCACCGCCGGGGCTGCC
TCGCCCGCCGGCTCCGAGCGCGGGGCTCCAGGCGCCCTGCCCTGTGCCTGGGCGGCAGCG
CTGTTAGTCTGGGGGCGCCCTCCGCTTCCTGCCTTAGGGGTCCGCGGCCGGCAGGATCAT
GCTGCTGAAGGAGTACAGGATCTGCATGCCGCTCACCGTGGACGAGTATAAAATCGGACA
GCTGTACATGATCAGCAAGCACAGCCACGAACAGAGCGACCGTGGGGAAGGGGTGGAGGT
CGTCCAGAACGAGCCCTTCGAGGACCCTCACCATGGCAACGGACAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55240849|gb|EAL40545.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55240849|gb|EAL40545.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               222-368, + strand, RNAz p=0.971991

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               222-368, + strand, RNAz p=0.971991

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-706, gnl|bosTau2|chr19 (43534853-43534108)
               

               
               2-706, gnl|Hg17|chr17 (62804068-62804780)
               

               
               2-706, gnl|Mm7|chr11 (107579623-107578932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-706, gnl|bosTau2|chr19 (43534853-43534108)
               

               
               2-706, gnl|Hg17|chr17 (62804068-62804780)
               

               
               2-706, gnl|Mm7|chr11 (107579623-107578932)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	2-706, gnl\|bosTau2\|chr19 (43534853-43534108)
	2-706, gnl\|Hg17\|chr17 (62804068-62804780)
	2-706, gnl\|Mm7\|chr11 (107579623-107578932)