Ss1.1-Thy1-THY010063F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTGACAAAGTGGTAAAGCGGCCAGAGGAGCGAGTCAAGGTGGGAATGACTGTTCACTG CCGAATCATGAAGATTGACATCGAGAAGTTTAGTGCAGACCTGACCTGCCGCACCTCAGA CCTCATGGACAGGAACAACGAGTGGAAGCTGCCCAAGGACACCTACTATGACTTTGACGC TGAAGCAGCAGACCACAAGCAGGAGGAGGACATGAAGCGGAAGCAGCAGCGGACTACATA TATCAAGCGAGTGATTGCACACCCGTCCTTCCATAATATAAACTTTAAGCAAGCGGAAAA GATGATGGAGACCATGGACCAGGGAGACGTGATCATCCGACCGAGCAGCAAGGGTGAAAA TCACCTGACAGTGACCTGGAAAGTCAGTGACGGCATCTATCAGCACGTGGACGTGCGGGA AGAGGGCAAGGAAAACGCCTTCAGCCTGGGAGCCACCCTGTGGATCAACAGTGAGGAATT TGAAGACTTGGATGAGATTGTTGCCCGCTATGTTCAGCCCATGGCCTCCTTTGCCCGGGA CCTTCTGAACCACAAGTATTATCAGGACTGCAGTGGTGGGGACCGTAAGAAATTAGAGGA GCTGCTCATCAAAACTAAGAAGGAGAAGCCCACCTTCATTCCCTATTTCATCTGTGCCTG CAAGGAACTGCCCGGCAAGTTCCTACTGGGATACCAGCCCCGGGGTAAACCCAGGATTGA ATATGTAACAGTGACTCCAGAAGGATTCCGGTACCGGGGCCAAATCTTCCCCACTGTGAA CGGCCTTTTCAGATGGTTTAAGGATCACTATCAGGATCCTGTACCAGGCATCACCCCCAG TAGCAGCAGCAGGACCCGGACACCTGCTTCTATCAATGCTACCCCAGCCAACATCAACCT TGCAGATCTGACACGGGCTGTGAACGCCTTGCCCCAGAACATGACTTCACAGATGTTCAG TGCCATTGCTGCCGTGACGGGCCAAGGCCAGAACCCTAATGCCACCCCAGCCCAGTGGGC CTCCAGCCAGTATGGCTATGGCGGCAGTGGAGGGGGCAGCAGCGCTTACCACGTGTTCCC GACGCCAGCCCAGCAGCCAGTGGCCACACCGCTAATGACCCCCAGCTACTCCTACACGAC CCCAAGCCAGCCCATCACCACGCCGCAGTACCACCAGCTACAGGCCAGCACCACCCCACA GTCTGCCCAGGCCCAGCCCCAGCCCTCATCCAGCTCCCGGCAACGGCAGCAGCAGCCAAA GTCCAACAGCCATGCAGCCATTGACTGGGGGAAGATGGCGGAGCAGTGGCTGCAGGAAAA GGAGGCAGAACGGCGGAAACAGAAGCAGAGGCTGACGCCCCGGCCCTCCCCCAGCCCTAT GATCGAAAGCACCCCCATGTCTATTGCTGGCGATGCCACCCCGCTCCTGGACGAGATGGA TCGGTAGGGGGCCTGCTCCTAGGACTCTGGTTACCTCCGAGGCTGGGGGAGGCCTGGCTG CCCATTGCCTCACTCCCTGCCCCTCCTTTTCTGTCCATAAAGTGGCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTGACAAAGTGGTAAAGCGGCCAGAGGAGCGAGTCAAGGTGGGAATGACTGTTCACTG CCGAATCATGAAGATTGACATCGAGAAGTTTAGTGCAGACCTGACCTGCCGCACCTCAGA CCTCATGGACAGGAACAACGAGTGGAAGCTGCCCAAGGACACCTACTATGACTTTGACGC TGAAGCAGCAGACCACAAGCAGGAGGAGGACATGAAGCGGAAGCAGCAGCGGACTACATA TATCAAGCGAGTGATTGCACACCCGTCCTTCCATAATATAAACTTTAAGCAAGCGGAAAA GATGATGGAGACCATGGACCAGGGAGACGTGATCATCCGACCGAGCAGCAAGGGTGAAAA TCACCTGACAGTGACCTGGAAAGTCAGTGACGGCATCTATCAGCACGTGGACGTGCGGGA AGAGGGCAAGGAAAACGCCTTCAGCCTGGGAGCCACCCTGTGGATCAACAGTGAGGAATT TGAAGACTTGGATGAGATTGTTGCCCGCTATGTTCAGCCCATGGCCTCCTTTGCCCGGGA CCTTCTGAACCACAAGTATTATCAGGACTGCAGTGGTGGGGACCGTAAGAAATTAGAGGA GCTGCTCATCAAAACTAAGAAGGAGAAGCCCACCTTCATTCCCTATTTCATCTGTGCCTG CAAGGAACTGCCCGGCAAGTTCCTACTGGGATACCAGCCCCGGGGTAAACCCAGGATTGA ATATGTAACAGTGACTCCAGAAGGATTCCGGTACCGGGGCCAAATCTTCCCCACTGTGAA CGGCCTTTTCAGATGGTTTAAGGATCACTATCAGGATCCTGTACCAGGCATCACCCCCAG TAGCAGCAGCAGGACCCGGACACCTGCTTCTATCAATGCTACCCCAGCCAACATCAACCT TGCAGATCTGACACGGGCTGTGAACGCCTTGCCCCAGAACATGACTTCACAGATGTTCAG TGCCATTGCTGCCGTGACGGGCCAAGGCCAGAACCCTAATGCCACCCCAGCCCAGTGGGC CTCCAGCCAGTATGGCTATGGCGGCAGTGGAGGGGGCAGCAGCGCTTACCACGTGTTCCC GACGCCAGCCCAGCAGCCAGTGGCCACACCGCTAATGACCCCCAGCTACTCCTACACGAC CCCAAGCCAGCCCATCACCACGCCGCAGTACCACCAGCTACAGGCCAGCACCACCCCACA GTCTGCCCAGGCCCAGCCCCAGCCCTCATCCAGCTCCCGGCAACGGCAGCAGCAGCCAAA GTCCAACAGCCATGCAGCCATTGACTGGGGGAAGATGGCGGAGCAGTGGCTGCAGGAAAA GGAGGCAGAACGGCGGAAACAGAAGCAGAGGCTGACGCCCCGGCCCTCCCCCAGCCCTAT GATCGAAAGCACCCCCATGTCTATTGCTGGCGATGCCACCCCGCTCCTGGACGAGATGGA TCGGTAGGGGGCCTGCTCCTAGGACTCTGGTTACCTCCGAGGCTGGGGGAGGCCTGGCTG CCCATTGCCTCACTCCCTGCCCCTCCTTTTCTGTCCATAAAGTGGCGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 318-1535, - strand, RNAz p=0.886923 | |
| 1261-1379, - strand, RNAz p=0.719572 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 318-1535, - strand, RNAz p=0.886923 | |
| 1261-1379, - strand, RNAz p=0.719572 |
| Aligned organism(s): 90 entry(ies) | More info |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
| 36-234, gnl|bosTau2|chr19 (13664614-13664812) | |
| 36-234, gnl|canFam2|chr9 (46215584-46215828) | |
| 36-234, gnl|danRer3|chr21 (23638984-23638780) | |
| 36-234, gnl|dasNov1|scaffold_5542 (81193-80949) | |
| 36-234, gnl|echTel1|scaffold_243629 (1254-1010) | |
| 36-234, gnl|fr1|chrUn (169647345-169647547) | |
| 36-234, gnl|galGal2|chrUn (16056047-16056270) | |
| 36-234, gnl|hg17|chr17 (24046473-24046717) | |
| 36-234, gnl|Hg17|chr17 (24046492-24046690) | |
| 36-234, gnl|loxAfr1|scaffold_33503 (6277-6033) | |
| 36-234, gnl|mm7|chr11 (78295063-78294820) | |
| 36-234, gnl|Mm7|chr11 (78295042-78294844) | |
| 36-234, gnl|monDom2|scaffold_44 (14640298-14640525) | |
| 36-234, gnl|oryCun1|scaffold_211086 (75108-74864) | |
| 36-234, gnl|panTro1|chr19 (27388472-27388716) | |
| 36-234, gnl|rheMac2|chr16 (23898834-23899078) | |
| 36-234, gnl|rn3|chr10 (64432639-64432883) | |
| 36-234, gnl|tetNig1|chr7 (7288619-7288414) | |
| 36-234, gnl|xenTro1|scaffold_50 (1256260-1256029) | |
| 239-476, gnl|bosTau2|chr19 (13665199-13665436) | |
| 239-476, gnl|canFam2|chr9 (46216177-46216456) | |
| 239-476, gnl|danRer3|chr21 (23638734-23638455) | |
| 239-476, gnl|dasNov1|scaffold_5542 (80578-80299) | |
| 239-476, gnl|echTel1|scaffold_243629 (858-582) | |
| 239-476, gnl|fr1|chrUn (169647625-169647975) | |
| 239-476, gnl|galGal2|chrUn (16056362-16056626) | |
| 239-476, gnl|hg17|chr17 (24047958-24048237) | |
| 239-476, gnl|Hg17|chr17 (24047991-24048228) | |
| 239-476, gnl|loxAfr1|scaffold_33503 (5692-5415) | |
| 239-476, gnl|mm7|chr11 (78294511-78294238) | |
| 239-476, gnl|Mm7|chr11 (78294480-78294243) | |
| 239-476, gnl|monDom2|scaffold_44 (14640991-14641268) | |
| 239-476, gnl|oryCun1|scaffold_211086 (74575-74296) | |
| 239-476, gnl|panTro1|chr19 (27389953-27390232) | |
| 239-476, gnl|rheMac2|chr16 (23900622-23900901) | |
| 239-476, gnl|rn3|chr10 (64433173-64433447) | |
| 239-476, gnl|tetNig1|chr7 (7288353-7287989) | |
| 239-476, gnl|xenTro1|scaffold_50 (1255938-1255670) | |
| 588-715, gnl|bosTau2|chr19 (13666658-13666785) | |
| 588-715, gnl|canFam2|chr9 (46217311-46217467) | |
| 588-715, gnl|danRer3|chr21 (23635958-23635827) | |
| 588-715, gnl|dasNov1|scaffold_5542 (79420-79265) | |
| 588-715, gnl|fr1|chrUn (169648251-169648413) | |
| 588-715, gnl|galGal2|chrUn (16057621-16057752) | |
| 588-715, gnl|hg17|chr17 (24049049-24049205) | |
| 588-715, gnl|Hg17|chr17 (24049049-24049176) | |
| 588-715, gnl|loxAfr1|scaffold_33503 (4623-4467) | |
| 588-715, gnl|mm7|chr11 (78293500-78293344) | |
| 588-715, gnl|Mm7|chr11 (78293498-78293371) | |
| 588-715, gnl|monDom2|scaffold_44 (14644093-14644249) | |
| 588-715, gnl|oryCun1|scaffold_211086 (73201-73045) | |
| 588-715, gnl|panTro1|chr19 (27391061-27391217) | |
| 588-715, gnl|rheMac2|chr16 (23901742-23901898) | |
| 588-715, gnl|rn3|chr10 (64434206-64434362) | |
| 588-715, gnl|tetNig1|chr7 (7287726-7287589) | |
| 588-715, gnl|xenTro1|scaffold_50 (1253137-1252978) | |
| 899-1074, gnl|bosTau2|chr19 (13669136-13669311) | |
| 899-1074, gnl|canFam2|chr9 (46219888-46220091) | |
| 899-1074, gnl|danRer3|chr21 (23635396-23635189) | |
| 899-1074, gnl|dasNov1|scaffold_21797 (55522-55724) | |
| 899-1074, gnl|fr1|chrUn (169648949-169649147) | |
| 899-1074, gnl|galGal2|chrUn (16058884-16059067) | |
| 899-1074, gnl|hg17|chr17 (24051470-24051674) | |
| 899-1074, gnl|Hg17|chr17 (24051484-24051659) | |
| 899-1074, gnl|mm7|chr11 (78290611-78290413) | |
| 899-1074, gnl|Mm7|chr11 (78290600-78290425) | |
| 899-1074, gnl|monDom2|scaffold_44 (14645388-14645592) | |
| 899-1074, gnl|oryCun1|scaffold_211086 (71059-70856) | |
| 899-1074, gnl|panTro1|chr19 (27393471-27393672) | |
| 899-1074, gnl|rheMac2|chr16 (23904162-23904366) | |
| 899-1074, gnl|rn3|chr10 (64437224-64437422) | |
| 899-1074, gnl|tetNig1|chr7 (7287051-7286839) | |
| 899-1074, gnl|xenTro1|scaffold_50 (1251698-1251496) | |
| 1261-1548, gnl|bosTau2|chr19 (13670192-13670479) | |
| 1261-1548, gnl|canFam2|chr9 (46220921-46221127) | |
| 1261-1548, gnl|danRer3|chr21 (23631979-23631770) | |
| 1261-1548, gnl|dasNov1|scaffold_5542 (75915-75709) | |
| 1261-1548, gnl|galGal2|chrUn (16060518-16060731) | |
| 1261-1548, gnl|hg17|chr17 (24052567-24052773) | |
| 1261-1548, gnl|Hg17|chr17 (24052584-24052871) | |
| 1261-1548, gnl|loxAfr1|scaffold_33503 (865-659) | |
| 1261-1548, gnl|mm7|chr11 (78289363-78289157) | |
| 1261-1548, gnl|Mm7|chr11 (78289344-78289053) | |
| 1261-1548, gnl|monDom2|scaffold_44 (14646725-14646931) | |
| 1261-1548, gnl|oryCun1|scaffold_211086 (70086-69879) | |
| 1261-1548, gnl|panTro1|chr19 (27394565-27394771) | |
| 1261-1548, gnl|rheMac2|chr16 (23905257-23905463) | |
| 1261-1548, gnl|rn3|chr10 (64438445-64438651) | |
| 1261-1548, gnl|tetNig1|chr7 (7286334-7286129) | |
| 1261-1548, gnl|xenTro1|scaffold_50 (1249655-1249449) |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-234, gnl|bosTau2|chr19 (13664614-13664812) | |
| 36-234, gnl|canFam2|chr9 (46215584-46215828) | |
| 36-234, gnl|danRer3|chr21 (23638984-23638780) | |
| 36-234, gnl|dasNov1|scaffold_5542 (81193-80949) | |
| 36-234, gnl|echTel1|scaffold_243629 (1254-1010) | |
| 36-234, gnl|fr1|chrUn (169647345-169647547) | |
| 36-234, gnl|galGal2|chrUn (16056047-16056270) | |
| 36-234, gnl|hg17|chr17 (24046473-24046717) | |
| 36-234, gnl|Hg17|chr17 (24046492-24046690) | |
| 36-234, gnl|loxAfr1|scaffold_33503 (6277-6033) | |
| 36-234, gnl|mm7|chr11 (78295063-78294820) | |
| 36-234, gnl|Mm7|chr11 (78295042-78294844) | |
| 36-234, gnl|monDom2|scaffold_44 (14640298-14640525) | |
| 36-234, gnl|oryCun1|scaffold_211086 (75108-74864) | |
| 36-234, gnl|panTro1|chr19 (27388472-27388716) | |
| 36-234, gnl|rheMac2|chr16 (23898834-23899078) | |
| 36-234, gnl|rn3|chr10 (64432639-64432883) | |
| 36-234, gnl|tetNig1|chr7 (7288619-7288414) | |
| 36-234, gnl|xenTro1|scaffold_50 (1256260-1256029) | |
| 239-476, gnl|bosTau2|chr19 (13665199-13665436) | |
| 239-476, gnl|canFam2|chr9 (46216177-46216456) | |
| 239-476, gnl|danRer3|chr21 (23638734-23638455) | |
| 239-476, gnl|dasNov1|scaffold_5542 (80578-80299) | |
| 239-476, gnl|echTel1|scaffold_243629 (858-582) | |
| 239-476, gnl|fr1|chrUn (169647625-169647975) | |
| 239-476, gnl|galGal2|chrUn (16056362-16056626) | |
| 239-476, gnl|hg17|chr17 (24047958-24048237) | |
| 239-476, gnl|Hg17|chr17 (24047991-24048228) | |
| 239-476, gnl|loxAfr1|scaffold_33503 (5692-5415) | |
| 239-476, gnl|mm7|chr11 (78294511-78294238) | |
| 239-476, gnl|Mm7|chr11 (78294480-78294243) | |
| 239-476, gnl|monDom2|scaffold_44 (14640991-14641268) | |
| 239-476, gnl|oryCun1|scaffold_211086 (74575-74296) | |
| 239-476, gnl|panTro1|chr19 (27389953-27390232) | |
| 239-476, gnl|rheMac2|chr16 (23900622-23900901) | |
| 239-476, gnl|rn3|chr10 (64433173-64433447) | |
| 239-476, gnl|tetNig1|chr7 (7288353-7287989) | |
| 239-476, gnl|xenTro1|scaffold_50 (1255938-1255670) | |
| 588-715, gnl|bosTau2|chr19 (13666658-13666785) | |
| 588-715, gnl|canFam2|chr9 (46217311-46217467) | |
| 588-715, gnl|danRer3|chr21 (23635958-23635827) | |
| 588-715, gnl|dasNov1|scaffold_5542 (79420-79265) | |
| 588-715, gnl|fr1|chrUn (169648251-169648413) | |
| 588-715, gnl|galGal2|chrUn (16057621-16057752) | |
| 588-715, gnl|hg17|chr17 (24049049-24049205) | |
| 588-715, gnl|Hg17|chr17 (24049049-24049176) | |
| 588-715, gnl|loxAfr1|scaffold_33503 (4623-4467) | |
| 588-715, gnl|mm7|chr11 (78293500-78293344) | |
| 588-715, gnl|Mm7|chr11 (78293498-78293371) | |
| 588-715, gnl|monDom2|scaffold_44 (14644093-14644249) | |
| 588-715, gnl|oryCun1|scaffold_211086 (73201-73045) | |
| 588-715, gnl|panTro1|chr19 (27391061-27391217) | |
| 588-715, gnl|rheMac2|chr16 (23901742-23901898) | |
| 588-715, gnl|rn3|chr10 (64434206-64434362) | |
| 588-715, gnl|tetNig1|chr7 (7287726-7287589) | |
| 588-715, gnl|xenTro1|scaffold_50 (1253137-1252978) | |
| 899-1074, gnl|bosTau2|chr19 (13669136-13669311) | |
| 899-1074, gnl|canFam2|chr9 (46219888-46220091) | |
| 899-1074, gnl|danRer3|chr21 (23635396-23635189) | |
| 899-1074, gnl|dasNov1|scaffold_21797 (55522-55724) | |
| 899-1074, gnl|fr1|chrUn (169648949-169649147) | |
| 899-1074, gnl|galGal2|chrUn (16058884-16059067) | |
| 899-1074, gnl|hg17|chr17 (24051470-24051674) | |
| 899-1074, gnl|Hg17|chr17 (24051484-24051659) | |
| 899-1074, gnl|mm7|chr11 (78290611-78290413) | |
| 899-1074, gnl|Mm7|chr11 (78290600-78290425) | |
| 899-1074, gnl|monDom2|scaffold_44 (14645388-14645592) | |
| 899-1074, gnl|oryCun1|scaffold_211086 (71059-70856) | |
| 899-1074, gnl|panTro1|chr19 (27393471-27393672) | |
| 899-1074, gnl|rheMac2|chr16 (23904162-23904366) | |
| 899-1074, gnl|rn3|chr10 (64437224-64437422) | |
| 899-1074, gnl|tetNig1|chr7 (7287051-7286839) | |
| 899-1074, gnl|xenTro1|scaffold_50 (1251698-1251496) | |
| 1261-1548, gnl|bosTau2|chr19 (13670192-13670479) | |
| 1261-1548, gnl|canFam2|chr9 (46220921-46221127) | |
| 1261-1548, gnl|danRer3|chr21 (23631979-23631770) | |
| 1261-1548, gnl|dasNov1|scaffold_5542 (75915-75709) | |
| 1261-1548, gnl|galGal2|chrUn (16060518-16060731) | |
| 1261-1548, gnl|hg17|chr17 (24052567-24052773) | |
| 1261-1548, gnl|Hg17|chr17 (24052584-24052871) | |
| 1261-1548, gnl|loxAfr1|scaffold_33503 (865-659) | |
| 1261-1548, gnl|mm7|chr11 (78289363-78289157) | |
| 1261-1548, gnl|Mm7|chr11 (78289344-78289053) | |
| 1261-1548, gnl|monDom2|scaffold_44 (14646725-14646931) | |
| 1261-1548, gnl|oryCun1|scaffold_211086 (70086-69879) | |
| 1261-1548, gnl|panTro1|chr19 (27394565-27394771) | |
| 1261-1548, gnl|rheMac2|chr16 (23905257-23905463) | |
| 1261-1548, gnl|rn3|chr10 (64438445-64438651) | |
| 1261-1548, gnl|tetNig1|chr7 (7286334-7286129) | |
| 1261-1548, gnl|xenTro1|scaffold_50 (1249655-1249449) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| mas (0.42061) | |
| ill (0.351185) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| cli (0.152812) | |
| cov (0.132153) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.42061) | |
| ill (0.351185) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| cli (0.152812) | |
| cov (0.132153) | |
| jej (0.0989218) |