Ss1.1-Thy1-THY010063F12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGGGGTAAACCCCCGCTTCGACCCGGCTTCCTCCAGCTACTACTTGGCCACGCACAGC CTCCCCCATGTCATCAACCCAGTGGAGTCTCGGCTGGGATCCAGCACCGCCTCCCTTTAC CCTGTGCTCAACTTTCTCCTCTATGTACCTGAACTTGCCCACTCCCCCCTGTACATTCAG GACAAGGATGGGGCTCCAGTGGCCACCAACGCCTTCCACAGTCCCCGCTGGGGTGGCATT ATGATATACAATGTGGACCCCAAAGCCTACAATGCCTCGGAGCTGCCGGTGAGAGTTGAG GTGGACATGGTGCGAGTGATGGAGGTGTTCCTGGCTCAGCTGCGGTTGCTCTTTGGGATT GCTCAGCCCCAGGTGCCTCCAAAATGCCTGTTTTCAGGGCCTAAGAGTGAAGGGATAATG ACCTGGGAGCTAGACCGGCTGCTCTGGGCTCGGTCCGTGGAGAACCTGGCCACAGCCACC ACCACTCTGACTTCTCTGGCCCAGCTTCTAGGCAAGATCAGCAATATTGTCATCAAGGAT GATGTGGCATCTGAGGTGTACAGGGCCGTGGCTGCAGTCCAGAAGGCAGCGGAGGAGTTG GCCTCTGGACACCTGGCCTCTGCCTTTGCTGCCAGCCAGGAGGCTGTGACGTCCTCAGAG CGTGCCTTTTTTGATCCCTCGCTGCTCCACCTCCTCTATTTCCCTGATGACCAGAAGTTT GCCATCTACATCCCGCTCTTCCTGCCTATGGCTGTGCCCATCCTTTTGTCCCTGTTCAAG ATCTTCCTGGAGACTCGCAAGTCCTGGAAGAAGCCTGAGAAGATAGACTGAGCAGGGCAG CATCTCAGTAGGAAGCCTTCCTTTTTGGCCAGCATGGGAGCTGTTAGGCTGAGAGGCAGA TAAGTGGGGCCTGCCACGAATGACTTGTCTCCAGCCTGCTCTGTCGCCCCTGCAACGGTT GAAGTCTAACACTCCAAGAGGGTTTCATCTCTCCTTTCCCTCCCATTCATCTGGCTCAGG GCTCTCCCACTCTTCAAGCCCTCCAACCCCCTCCTCAAAAGACACATCATTGGTGTCTCC TTACCGGTCTTGAACTTGAGGGCCCTTTTCTCTCTCCCTCTGGGCAGGGGCAGCTTGTGC CTCTGCCCTGTTCCCCACAGTCCTCTTGCACTGAGAGGGAGCACTGGGGGAAAGCCCTGG GTTGGATTCTAGGGCTCTGCCCTCCAGGCCCTCAGGGAGAGCCCTAGCACTGCTCCCATG GAAAGGGCTGGGCTCCTGTCACCTCTGGGGCCTTCTCCCTTACTCCCCTTGCTCCAGGCT GGCTACACCTGTTGGGTGCAGCCTATTGCTGTGTGTGGCAGAGGTTGCCTTTATCTTTAC CTAGAGGCAGTATGGTGCGGTGGGGAAAATTCCGGACTTGGGATCAAACACATCTGAATT CAAACCCTTGCTTCTGCCCTTATCATCTGGGGAGCTTTGAGTAGGCCACTTAATCCTCCC TGAGCCTCAGTTTTTCATTTAAAAATAGCACTGATACCTCCCTTACAAGGTGGTTGTGAG TATTAAATGGATGAGCATGTGAAAGTGTCTGGCATATTCTAGGCTCTCAATAAACGTTGG TTGAATGTGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGGGGTAAACCCCCGCTTCGACCCGGCTTCCTCCAGCTACTACTTGGCCACGCACAGC CTCCCCCATGTCATCAACCCAGTGGAGTCTCGGCTGGGATCCAGCACCGCCTCCCTTTAC CCTGTGCTCAACTTTCTCCTCTATGTACCTGAACTTGCCCACTCCCCCCTGTACATTCAG GACAAGGATGGGGCTCCAGTGGCCACCAACGCCTTCCACAGTCCCCGCTGGGGTGGCATT ATGATATACAATGTGGACCCCAAAGCCTACAATGCCTCGGAGCTGCCGGTGAGAGTTGAG GTGGACATGGTGCGAGTGATGGAGGTGTTCCTGGCTCAGCTGCGGTTGCTCTTTGGGATT GCTCAGCCCCAGGTGCCTCCAAAATGCCTGTTTTCAGGGCCTAAGAGTGAAGGGATAATG ACCTGGGAGCTAGACCGGCTGCTCTGGGCTCGGTCCGTGGAGAACCTGGCCACAGCCACC ACCACTCTGACTTCTCTGGCCCAGCTTCTAGGCAAGATCAGCAATATTGTCATCAAGGAT GATGTGGCATCTGAGGTGTACAGGGCCGTGGCTGCAGTCCAGAAGGCAGCGGAGGAGTTG GCCTCTGGACACCTGGCCTCTGCCTTTGCTGCCAGCCAGGAGGCTGTGACGTCCTCAGAG CGTGCCTTTTTTGATCCCTCGCTGCTCCACCTCCTCTATTTCCCTGATGACCAGAAGTTT GCCATCTACATCCCGCTCTTCCTGCCTATGGCTGTGCCCATCCTTTTGTCCCTGTTCAAG ATCTTCCTGGAGACTCGCAAGTCCTGGAAGAAGCCTGAGAAGATAGACTGAGCAGGGCAG CATCTCAGTAGGAAGCCTTCCTTTTTGGCCAGCATGGGAGCTGTTAGGCTGAGAGGCAGA TAAGTGGGGCCTGCCACGAATGACTTGTCTCCAGCCTGCTCTGTCGCCCCTGCAACGGTT GAAGTCTAACACTCCAAGAGGGTTTCATCTCTCCTTTCCCTCCCATTCATCTGGCTCAGG GCTCTCCCACTCTTCAAGCCCTCCAACCCCCTCCTCAAAAGACACATCATTGGTGTCTCC TTACCGGTCTTGAACTTGAGGGCCCTTTTCTCTCTCCCTCTGGGCAGGGGCAGCTTGTGC CTCTGCCCTGTTCCCCACAGTCCTCTTGCACTGAGAGGGAGCACTGGGGGAAAGCCCTGG GTTGGATTCTAGGGCTCTGCCCTCCAGGCCCTCAGGGAGAGCCCTAGCACTGCTCCCATG GAAAGGGCTGGGCTCCTGTCACCTCTGGGGCCTTCTCCCTTACTCCCCTTGCTCCAGGCT GGCTACACCTGTTGGGTGCAGCCTATTGCTGTGTGTGGCAGAGGTTGCCTTTATCTTTAC CTAGAGGCAGTATGGTGCGGTGGGGAAAATTCCGGACTTGGGATCAAACACATCTGAATT CAAACCCTTGCTTCTGCCCTTATCATCTGGGGAGCTTTGAGTAGGCCACTTAATCCTCCC TGAGCCTCAGTTTTTCATTTAAAAATAGCACTGATACCTCCCTTACAAGGTGGTTGTGAG TATTAAATGGATGAGCATGTGAAAGTGTCTGGCATATTCTAGGCTCTCAATAAACGTTGG TTGAATGTGAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1230-1345, - strand, RNAz p=0.785941 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1230-1345, - strand, RNAz p=0.785941 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 97-246, gnl|bosTau2|chr19 (13561373-13561224) | |
| 97-246, gnl|canFam2|chr9 (46089762-46089914) | |
| 97-246, gnl|danRer3|chr21 (37770409-37770561) | |
| 97-246, gnl|dasNov1|scaffold_38690 (727-879) | |
| 97-246, gnl|echTel1|scaffold_313991 (75885-75733) | |
| 97-246, gnl|fr1|chrUn (201978592-201978744) | |
| 97-246, gnl|galGal2|chr19 (5388730-5388881) | |
| 97-246, gnl|hg17|chr17 (23907969-23908121) | |
| 97-246, gnl|Hg17|chr17 (23908118-23907970) | |
| 97-246, gnl|loxAfr1|scaffold_5483 (11219-11371) | |
| 97-246, gnl|mm7|chr11 (78421068-78420916) | |
| 97-246, gnl|Mm7|chr11 (78420917-78421065) | |
| 97-246, gnl|monDom2|scaffold_44 (14460414-14460566) | |
| 97-246, gnl|oryCun1|scaffold_190404 (91664-91512) | |
| 97-246, gnl|panTro1|chr19_random (12720580-12720732) | |
| 97-246, gnl|rheMac2|chr16 (23752224-23752376) | |
| 97-246, gnl|rn3|chr10 (64308973-64309125) | |
| 97-246, gnl|tetNig1|chr7 (3761884-3762036) | |
| 97-246, gnl|xenTro1|scaffold_50 (1471388-1471236) | |
| 554-875, gnl|bosTau2|chr19 (13558865-13558544) | |
| 554-875, gnl|Hg17|chr17 (23905642-23905093) | |
| 554-875, gnl|Mm7|chr11 (78423307-78423577) | |
| 1113-1631, gnl|bosTau2|chr19 (13558544-13558018) | |
| 1113-1631, gnl|Hg17|chr17 (23905093-23904543) | |
| 1113-1631, gnl|Mm7|chr11 (78423577-78424347) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-246, gnl|bosTau2|chr19 (13561373-13561224) | |
| 97-246, gnl|canFam2|chr9 (46089762-46089914) | |
| 97-246, gnl|danRer3|chr21 (37770409-37770561) | |
| 97-246, gnl|dasNov1|scaffold_38690 (727-879) | |
| 97-246, gnl|echTel1|scaffold_313991 (75885-75733) | |
| 97-246, gnl|fr1|chrUn (201978592-201978744) | |
| 97-246, gnl|galGal2|chr19 (5388730-5388881) | |
| 97-246, gnl|hg17|chr17 (23907969-23908121) | |
| 97-246, gnl|Hg17|chr17 (23908118-23907970) | |
| 97-246, gnl|loxAfr1|scaffold_5483 (11219-11371) | |
| 97-246, gnl|mm7|chr11 (78421068-78420916) | |
| 97-246, gnl|Mm7|chr11 (78420917-78421065) | |
| 97-246, gnl|monDom2|scaffold_44 (14460414-14460566) | |
| 97-246, gnl|oryCun1|scaffold_190404 (91664-91512) | |
| 97-246, gnl|panTro1|chr19_random (12720580-12720732) | |
| 97-246, gnl|rheMac2|chr16 (23752224-23752376) | |
| 97-246, gnl|rn3|chr10 (64308973-64309125) | |
| 97-246, gnl|tetNig1|chr7 (3761884-3762036) | |
| 97-246, gnl|xenTro1|scaffold_50 (1471388-1471236) | |
| 554-875, gnl|bosTau2|chr19 (13558865-13558544) | |
| 554-875, gnl|Hg17|chr17 (23905642-23905093) | |
| 554-875, gnl|Mm7|chr11 (78423307-78423577) | |
| 1113-1631, gnl|bosTau2|chr19 (13558544-13558018) | |
| 1113-1631, gnl|Hg17|chr17 (23905093-23904543) | |
| 1113-1631, gnl|Mm7|chr11 (78423577-78424347) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| jca (0.22792) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nco (0.161734) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.22792) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nco (0.161734) | |
| ute (0.132784) | |
| eep (0.122564) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |