Non-Coding RNA Search

Ss1.1-Thy1-THY010063G01.5

Sequence:


               
               GAACTCTGACTTTTAATGCTTCTAATATTCGATTTAACTCCACAAATGGTTCTTTCTGGC
TTGGGTCCACAGAAAGACCAGATTCCTGGCAGAGCTCCTCAGCTACATCCAGCATCCCTT
GTCGAAAGAAGTGCTCCACCATCACCTCATTGAGGAGCCTCTGGCTGTCTGCCTGCCAGC
AGCCGTCTATTCCCACACTGCTAATGTCAGAATCAAAATTCTTATCGATGGCTTTTCCAA
CCCGAGAAACGCTGCTGTGGATGTCTTTGTGGTCTGAGGCCAATTTTTGAACAGTGTCCT
TTATTCTTTTACAGCATTGTGTCAAAACAAGTGAAAGTGTCCCTGATAATTCAGCGTCTT
GGCCGTGGCTCTGCAGGATCTCGTGCTTGAGGCCGCCCGTGTAGTCGATAAGCTCCTCCA
GGCCGCGCTCGCACAGCTGCCCGTAGCCCGAGAACTTGTGCAGCACCTTCTCCAGCTCGC
GCTCCACCGTCACGCACTGATCCATCCCGGAGGCGGTGGCGGCAGCGGCGCTCGGCTGCC
CAGCGCCCGGGTGTCCGCAGCCGTTCGGCCCGGGCCCGGCCGAGGCCGCGTCCTGCTCCT
CGTCCCCCAAGCGGGCGGCACGGGCGACTGAAGAGGCGGACGCGCTAGCCCCGGCGCCGA
GGGAGCTCCGCGCAGCCCGCGCCCTCCTGCCCCATGGCGCCGCGACCCCGGCGCGTCGCC
GCTGCTCCCGCTCGTTCTTCCCACCCGGCCCCGAGCCCCCGCTCGCCGCGTTCGCTGTCC
GACGCGGCGCCGCCGATTGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTCTGACTTTTAATGCTTCTAATATTCGATTTAACTCCACAAATGGTTCTTTCTGGC
TTGGGTCCACAGAAAGACCAGATTCCTGGCAGAGCTCCTCAGCTACATCCAGCATCCCTT
GTCGAAAGAAGTGCTCCACCATCACCTCATTGAGGAGCCTCTGGCTGTCTGCCTGCCAGC
AGCCGTCTATTCCCACACTGCTAATGTCAGAATCAAAATTCTTATCGATGGCTTTTCCAA
CCCGAGAAACGCTGCTGTGGATGTCTTTGTGGTCTGAGGCCAATTTTTGAACAGTGTCCT
TTATTCTTTTACAGCATTGTGTCAAAACAAGTGAAAGTGTCCCTGATAATTCAGCGTCTT
GGCCGTGGCTCTGCAGGATCTCGTGCTTGAGGCCGCCCGTGTAGTCGATAAGCTCCTCCA
GGCCGCGCTCGCACAGCTGCCCGTAGCCCGAGAACTTGTGCAGCACCTTCTCCAGCTCGC
GCTCCACCGTCACGCACTGATCCATCCCGGAGGCGGTGGCGGCAGCGGCGCTCGGCTGCC
CAGCGCCCGGGTGTCCGCAGCCGTTCGGCCCGGGCCCGGCCGAGGCCGCGTCCTGCTCCT
CGTCCCCCAAGCGGGCGGCACGGGCGACTGAAGAGGCGGACGCGCTAGCCCCGGCGCCGA
GGGAGCTCCGCGCAGCCCGCGCCCTCCTGCCCCATGGCGCCGCGACCCCGGCGCGTCGCC
GCTGCTCCCGCTCGTTCTTCCCACCCGGCCCCGAGCCCCCGCTCGCCGCGTTCGCTGTCC
GACGCGGCGCCGCCGATTGTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46359096|gb|AAH69048.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46359096|gb|AAH69048.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               85-203, + strand, RNAz p=0.828733

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               85-203, + strand, RNAz p=0.828733

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               85-222, gnl|bosTau2|chr11 (35434174-35434037)
               

               
               85-222, gnl|canFam2|chr17 (41499779-41499586)
               

               
               85-222, gnl|dasNov1|scaffold_208055 (774-616)
               

               
               85-222, gnl|echTel1|scaffold_310041 (41280-41461)
               

               
               85-222, gnl|fr1|chrUn (109745417-109745592)
               

               
               85-222, gnl|galGal2|chr4 (85738989-85739163)
               

               
               85-222, gnl|hg17|chr2 (86890664-86890851)
               

               
               85-222, gnl|Hg17|chr2 (86890812-86890675)
               

               
               85-222, gnl|loxAfr1|scaffold_6166 (37379-37557)
               

               
               85-222, gnl|mm7|chr6 (71432862-71432680)
               

               
               85-222, gnl|Mm7|chr6 (71432715-71432852)
               

               
               85-222, gnl|monDom2|scaffold_63 (996052-996213)
               

               
               85-222, gnl|oryCun1|scaffold_140427 (20474-20653)
               

               
               85-222, gnl|panTro1|chr12 (89768952-89769139)
               

               
               85-222, gnl|rheMac2|chr13 (88360515-88360700)
               

               
               85-222, gnl|rn3|chr4 (104872860-104872679)
               

               
               85-222, gnl|tetNig1|chr1 (2451637-2451788)
               

               
               85-222, gnl|xenTro1|scaffold_149 (709482-709633)
               


               
               363-804, gnl|bosTau2|chr11 (35401296-35400843)
               

               
               363-804, gnl|Hg17|chr2 (86859591-86859140)
               

               
               363-804, gnl|Mm7|chr6 (71457928-71458380)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-222, gnl|bosTau2|chr11 (35434174-35434037)
               

               
               85-222, gnl|canFam2|chr17 (41499779-41499586)
               

               
               85-222, gnl|dasNov1|scaffold_208055 (774-616)
               

               
               85-222, gnl|echTel1|scaffold_310041 (41280-41461)
               

               
               85-222, gnl|fr1|chrUn (109745417-109745592)
               

               
               85-222, gnl|galGal2|chr4 (85738989-85739163)
               

               
               85-222, gnl|hg17|chr2 (86890664-86890851)
               

               
               85-222, gnl|Hg17|chr2 (86890812-86890675)
               

               
               85-222, gnl|loxAfr1|scaffold_6166 (37379-37557)
               

               
               85-222, gnl|mm7|chr6 (71432862-71432680)
               

               
               85-222, gnl|Mm7|chr6 (71432715-71432852)
               

               
               85-222, gnl|monDom2|scaffold_63 (996052-996213)
               

               
               85-222, gnl|oryCun1|scaffold_140427 (20474-20653)
               

               
               85-222, gnl|panTro1|chr12 (89768952-89769139)
               

               
               85-222, gnl|rheMac2|chr13 (88360515-88360700)
               

               
               85-222, gnl|rn3|chr4 (104872860-104872679)
               

               
               85-222, gnl|tetNig1|chr1 (2451637-2451788)
               

               
               85-222, gnl|xenTro1|scaffold_149 (709482-709633)
               


               
               363-804, gnl|bosTau2|chr11 (35401296-35400843)
               

               
               363-804, gnl|Hg17|chr2 (86859591-86859140)
               

               
               363-804, gnl|Mm7|chr6 (71457928-71458380)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eli (0.151814)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	85-222, gnl\|bosTau2\|chr11 (35434174-35434037)
	85-222, gnl\|canFam2\|chr17 (41499779-41499586)
	85-222, gnl\|dasNov1\|scaffold_208055 (774-616)
	85-222, gnl\|echTel1\|scaffold_310041 (41280-41461)
	85-222, gnl\|fr1\|chrUn (109745417-109745592)
	85-222, gnl\|galGal2\|chr4 (85738989-85739163)
	85-222, gnl\|hg17\|chr2 (86890664-86890851)
	85-222, gnl\|Hg17\|chr2 (86890812-86890675)
	85-222, gnl\|loxAfr1\|scaffold_6166 (37379-37557)
	85-222, gnl\|mm7\|chr6 (71432862-71432680)
	85-222, gnl\|Mm7\|chr6 (71432715-71432852)
	85-222, gnl\|monDom2\|scaffold_63 (996052-996213)
	85-222, gnl\|oryCun1\|scaffold_140427 (20474-20653)
	85-222, gnl\|panTro1\|chr12 (89768952-89769139)
	85-222, gnl\|rheMac2\|chr13 (88360515-88360700)
	85-222, gnl\|rn3\|chr4 (104872860-104872679)
	85-222, gnl\|tetNig1\|chr1 (2451637-2451788)
	85-222, gnl\|xenTro1\|scaffold_149 (709482-709633)

	363-804, gnl\|bosTau2\|chr11 (35401296-35400843)
	363-804, gnl\|Hg17\|chr2 (86859591-86859140)
	363-804, gnl\|Mm7\|chr6 (71457928-71458380)