Ss1.1-Thy1-THY010063G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGCGTTGCGGGGCCGGAACTGTCGGCGCGGGATCCGGCGCCTTCCGCTCAGCTGGGC TCAGGATGCGCGGCGGGCAGGGCGCGGCCCGGGCCCCGGTGCTCCAGTTCACCAACTGCC GCATCCTGCGGGGCGGGGCGTTGCTCAGGGAGGATCTGTGGGTGCGCGGGGGCCGCGTTC TGGACCCCGAGAAGCTGTTCTTTGAGGAGCGGCGCGTGGCTGATGAGCAGCGGGACTGCG GGGGCTGCATCCTAGCGCCTGGCTTCATCGACGTGCAGATCAACGGTGGATTTGGCGTTG ACTTCTCTCAGGCCACGGAGGACGTGGGTTCGGGAGTCGCCTTGGTGGCCCGGAGGATTT TGTCGCACGGAGTTACCTCCTTCTGCCCCACGTTGGTCACCTCGCCACCGGAGGTTTATC ACAAGGTCCTTCCTCAGATCCCTGTGAAGAGTGGTGGTCCCCATGGGGCAGGGGTCCTCG GGGTGCACCTGGAGGGCCCATTCATCAGCCGAGAGAAGCGGGGTGCGCACCCCGAGGCCC ACCTGCGCTCCTTTGAGGCCAATGCTTTCCAAGACGTGCTGGCCACCTACGGGTCCCTCG ACAACGTCCGCATCGTGACCCTCGCCCCTGAGCTGGGCCGCAGCCATGAAGTGATCCGGG CGCTGACGGCCCTCGGCATCTGCGTGTCCCTAGGGCACTCCGTGGCTGACTTGGGGACCG CGGAGGAAGCCGTGCAGAGCGGGGCCACCTTCATCACCCACCTGTTCAACGCCATGCTGC CTTTCCACCACCGTGACCCAGGCATCGTGGGGCTCCTGACCAGTGACCAGCTGCCCCCGG GCCGCCACATCTTCTACGGGCTGATTGCCGACGGCATGCACACCAATCCTGCCGCCCTGC GCATTGCCCACCGCGCTCATCCCAAGGGGCTGGTGCTGGTCACTGATGCCGTCCCCGCCC TGGGCCTGGGCAACGGCCGCCACACACTGGGGCAGCAAGAAGTGGAGGTGAATGGGCTGA CAGCCTACGTGGCAGGCACCAAGACGCTGAGCGGCAGCATAGCCCCAATGGATGCGTGCG TCCGGCACTTCCTGCGGGCCACAGGCTGTGGAGTGGAGTCTGCCCTAGAGGCTGCGTCCC TGCACCCCGCCCGGCTGCTGGGGCTGGAGAAGCACAAGGGGACCCTGGACTTCGGGGCTG ATGCAGACTTCGTGGTGCTCGATGACTCTCTACACGTCCGGGCCACCTACATCTTGGGCG AGCTGGTGTGGCAGGCAGAGGTGGCCAGGCAGTGACCGAGGACCACAGCTGGAGAGGAGG CCCAGCCCCAGCTGGACACTGTCGCTGGGCCGTGGAGGAGCAGGTCTCCAGAGAGGAGGG GAGCCCTGCCCCGTGGAGGCGCAGGCTGGGGGGCGGGGCTTGGATAAACGTGTGTCCTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGCGTTGCGGGGCCGGAACTGTCGGCGCGGGATCCGGCGCCTTCCGCTCAGCTGGGC TCAGGATGCGCGGCGGGCAGGGCGCGGCCCGGGCCCCGGTGCTCCAGTTCACCAACTGCC GCATCCTGCGGGGCGGGGCGTTGCTCAGGGAGGATCTGTGGGTGCGCGGGGGCCGCGTTC TGGACCCCGAGAAGCTGTTCTTTGAGGAGCGGCGCGTGGCTGATGAGCAGCGGGACTGCG GGGGCTGCATCCTAGCGCCTGGCTTCATCGACGTGCAGATCAACGGTGGATTTGGCGTTG ACTTCTCTCAGGCCACGGAGGACGTGGGTTCGGGAGTCGCCTTGGTGGCCCGGAGGATTT TGTCGCACGGAGTTACCTCCTTCTGCCCCACGTTGGTCACCTCGCCACCGGAGGTTTATC ACAAGGTCCTTCCTCAGATCCCTGTGAAGAGTGGTGGTCCCCATGGGGCAGGGGTCCTCG GGGTGCACCTGGAGGGCCCATTCATCAGCCGAGAGAAGCGGGGTGCGCACCCCGAGGCCC ACCTGCGCTCCTTTGAGGCCAATGCTTTCCAAGACGTGCTGGCCACCTACGGGTCCCTCG ACAACGTCCGCATCGTGACCCTCGCCCCTGAGCTGGGCCGCAGCCATGAAGTGATCCGGG CGCTGACGGCCCTCGGCATCTGCGTGTCCCTAGGGCACTCCGTGGCTGACTTGGGGACCG CGGAGGAAGCCGTGCAGAGCGGGGCCACCTTCATCACCCACCTGTTCAACGCCATGCTGC CTTTCCACCACCGTGACCCAGGCATCGTGGGGCTCCTGACCAGTGACCAGCTGCCCCCGG GCCGCCACATCTTCTACGGGCTGATTGCCGACGGCATGCACACCAATCCTGCCGCCCTGC GCATTGCCCACCGCGCTCATCCCAAGGGGCTGGTGCTGGTCACTGATGCCGTCCCCGCCC TGGGCCTGGGCAACGGCCGCCACACACTGGGGCAGCAAGAAGTGGAGGTGAATGGGCTGA CAGCCTACGTGGCAGGCACCAAGACGCTGAGCGGCAGCATAGCCCCAATGGATGCGTGCG TCCGGCACTTCCTGCGGGCCACAGGCTGTGGAGTGGAGTCTGCCCTAGAGGCTGCGTCCC TGCACCCCGCCCGGCTGCTGGGGCTGGAGAAGCACAAGGGGACCCTGGACTTCGGGGCTG ATGCAGACTTCGTGGTGCTCGATGACTCTCTACACGTCCGGGCCACCTACATCTTGGGCG AGCTGGTGTGGCAGGCAGAGGTGGCCAGGCAGTGACCGAGGACCACAGCTGGAGAGGAGG CCCAGCCCCAGCTGGACACTGTCGCTGGGCCGTGGAGGAGCAGGTCTCCAGAGAGGAGGG GAGCCCTGCCCCGTGGAGGCGCAGGCTGGGGGGCGGGGCTTGGATAAACGTGTGTCCTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 480-598, - strand, RNAz p=0.545774 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 480-598, - strand, RNAz p=0.545774 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 146-288, gnl|bosTau2|chr25 (1561519-1561377) | |
| 146-288, gnl|canFam2|chr6 (41560623-41560462) | |
| 146-288, gnl|danRer3|chrUn (108879695-108879844) | |
| 146-288, gnl|echTel1|scaffold_285932 (36884-37000) | |
| 146-288, gnl|fr1|chrUn (131696196-131696047) | |
| 146-288, gnl|galGal2|chr14 (20369647-20369801) | |
| 146-288, gnl|hg17|chr16 (2510760-2510920) | |
| 146-288, gnl|Hg17|chr16 (2510768-2510910) | |
| 146-288, gnl|mm7|chr17 (22344178-22344018) | |
| 146-288, gnl|Mm7|chr17 (22344168-22344026) | |
| 146-288, gnl|monDom2|scaffold_5 (114850759-114850909) | |
| 146-288, gnl|panTro1|chr18 (2324632-2324792) | |
| 146-288, gnl|rheMac2|chr20 (2531863-2532023) | |
| 146-288, gnl|rn3|chr10 (13415161-13415001) | |
| 146-288, gnl|tetNig1|chr3 (13941327-13941186) | |
| 146-288, gnl|xenTro1|scaffold_12 (3831335-3831484) | |
| 480-694, gnl|bosTau2|chr25 (1557550-1557336) | |
| 480-694, gnl|canFam2|chr6 (41553803-41553548) | |
| 480-694, gnl|danRer3|chrUn (108885634-108885856) | |
| 480-694, gnl|echTel1|scaffold_197965 (3338-3583) | |
| 480-694, gnl|fr1|chrUn (131695492-131695240) | |
| 480-694, gnl|galGal2|chr14 (20371018-20371266) | |
| 480-694, gnl|hg17|chr16 (2517761-2518015) | |
| 480-694, gnl|Hg17|chr16 (2517774-2517988) | |
| 480-694, gnl|loxAfr1|scaffold_39021 (8691-8440) | |
| 480-694, gnl|mm7|chr17 (22339372-22339116) | |
| 480-694, gnl|Mm7|chr17 (22339356-22339142) | |
| 480-694, gnl|monDom2|scaffold_5 (114855019-114855271) | |
| 480-694, gnl|panTro1|chr18 (2331683-2331937) | |
| 480-694, gnl|rheMac2|chr20 (2538941-2539195) | |
| 480-694, gnl|rn3|chr10 (13409796-13409540) | |
| 480-694, gnl|tetNig1|chr3 (13940738-13940495) | |
| 480-694, gnl|xenTro1|scaffold_12 (3832980-3833223) | |
| 783-928, gnl|bosTau2|chr25 (1557102-1556957) | |
| 783-928, gnl|canFam2|chr6 (41553321-41553159) | |
| 783-928, gnl|danRer3|chrUn (108887124-108887274) | |
| 783-928, gnl|echTel1|scaffold_197965 (3780-3939) | |
| 783-928, gnl|fr1|chrUn (131695008-131694845) | |
| 783-928, gnl|galGal2|chr14 (20372702-20372864) | |
| 783-928, gnl|hg17|chr16 (2518224-2518388) | |
| 783-928, gnl|Hg17|chr16 (2518238-2518383) | |
| 783-928, gnl|loxAfr1|scaffold_39021 (8236-8077) | |
| 783-928, gnl|mm7|chr17 (22338909-22338747) | |
| 783-928, gnl|Mm7|chr17 (22338895-22338750) | |
| 783-928, gnl|monDom2|scaffold_5 (114855825-114855997) | |
| 783-928, gnl|panTro1|chr18 (2332146-2332310) | |
| 783-928, gnl|rheMac2|chr20 (2539404-2539568) | |
| 783-928, gnl|rn3|chr10 (13409333-13409171) | |
| 783-928, gnl|tetNig1|chr3 (13940184-13940032) | |
| 783-928, gnl|xenTro1|scaffold_12 (3834001-3834165) | |
| 1198-1437, gnl|bosTau2|chr25 (1555271-1555028) | |
| 1198-1437, gnl|Hg17|chr16 (2519468-2519726) | |
| 1198-1437, gnl|Mm7|chr17 (22336927-22336679) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-288, gnl|bosTau2|chr25 (1561519-1561377) | |
| 146-288, gnl|canFam2|chr6 (41560623-41560462) | |
| 146-288, gnl|danRer3|chrUn (108879695-108879844) | |
| 146-288, gnl|echTel1|scaffold_285932 (36884-37000) | |
| 146-288, gnl|fr1|chrUn (131696196-131696047) | |
| 146-288, gnl|galGal2|chr14 (20369647-20369801) | |
| 146-288, gnl|hg17|chr16 (2510760-2510920) | |
| 146-288, gnl|Hg17|chr16 (2510768-2510910) | |
| 146-288, gnl|mm7|chr17 (22344178-22344018) | |
| 146-288, gnl|Mm7|chr17 (22344168-22344026) | |
| 146-288, gnl|monDom2|scaffold_5 (114850759-114850909) | |
| 146-288, gnl|panTro1|chr18 (2324632-2324792) | |
| 146-288, gnl|rheMac2|chr20 (2531863-2532023) | |
| 146-288, gnl|rn3|chr10 (13415161-13415001) | |
| 146-288, gnl|tetNig1|chr3 (13941327-13941186) | |
| 146-288, gnl|xenTro1|scaffold_12 (3831335-3831484) | |
| 480-694, gnl|bosTau2|chr25 (1557550-1557336) | |
| 480-694, gnl|canFam2|chr6 (41553803-41553548) | |
| 480-694, gnl|danRer3|chrUn (108885634-108885856) | |
| 480-694, gnl|echTel1|scaffold_197965 (3338-3583) | |
| 480-694, gnl|fr1|chrUn (131695492-131695240) | |
| 480-694, gnl|galGal2|chr14 (20371018-20371266) | |
| 480-694, gnl|hg17|chr16 (2517761-2518015) | |
| 480-694, gnl|Hg17|chr16 (2517774-2517988) | |
| 480-694, gnl|loxAfr1|scaffold_39021 (8691-8440) | |
| 480-694, gnl|mm7|chr17 (22339372-22339116) | |
| 480-694, gnl|Mm7|chr17 (22339356-22339142) | |
| 480-694, gnl|monDom2|scaffold_5 (114855019-114855271) | |
| 480-694, gnl|panTro1|chr18 (2331683-2331937) | |
| 480-694, gnl|rheMac2|chr20 (2538941-2539195) | |
| 480-694, gnl|rn3|chr10 (13409796-13409540) | |
| 480-694, gnl|tetNig1|chr3 (13940738-13940495) | |
| 480-694, gnl|xenTro1|scaffold_12 (3832980-3833223) | |
| 783-928, gnl|bosTau2|chr25 (1557102-1556957) | |
| 783-928, gnl|canFam2|chr6 (41553321-41553159) | |
| 783-928, gnl|danRer3|chrUn (108887124-108887274) | |
| 783-928, gnl|echTel1|scaffold_197965 (3780-3939) | |
| 783-928, gnl|fr1|chrUn (131695008-131694845) | |
| 783-928, gnl|galGal2|chr14 (20372702-20372864) | |
| 783-928, gnl|hg17|chr16 (2518224-2518388) | |
| 783-928, gnl|Hg17|chr16 (2518238-2518383) | |
| 783-928, gnl|loxAfr1|scaffold_39021 (8236-8077) | |
| 783-928, gnl|mm7|chr17 (22338909-22338747) | |
| 783-928, gnl|Mm7|chr17 (22338895-22338750) | |
| 783-928, gnl|monDom2|scaffold_5 (114855825-114855997) | |
| 783-928, gnl|panTro1|chr18 (2332146-2332310) | |
| 783-928, gnl|rheMac2|chr20 (2539404-2539568) | |
| 783-928, gnl|rn3|chr10 (13409333-13409171) | |
| 783-928, gnl|tetNig1|chr3 (13940184-13940032) | |
| 783-928, gnl|xenTro1|scaffold_12 (3834001-3834165) | |
| 1198-1437, gnl|bosTau2|chr25 (1555271-1555028) | |
| 1198-1437, gnl|Hg17|chr16 (2519468-2519726) | |
| 1198-1437, gnl|Mm7|chr17 (22336927-22336679) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cga (0.279096) | |
| fce (0.271592) | |
| eep (0.245128) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| fce (0.271592) | |
| eep (0.245128) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eru (0.120048) | |
| jej (0.0989218) |