Ss1.1-Thy1-THY010063H02.5
|
CCTTTCTCTCGCGGCTGCTTGAGCTCGGGCGGCGAAGGGTCTCGCTGGCTTCAGACCCTG
CCCGCCAGGCCCAGCGCTGCGCGCAGCCCCAGCGAGAGCATGGGCGGCGCCCGGGACGTG
GGCTGGGTGGCGGCGGGCCTGGTCCTTGCGGCCGGTGCCTGCTATTGCATTTACAGGCTG
ACGCGGGGCCAGCGGCGAGGTGCCCGTCGGGTTGGACTGCGCCCCTCGCGGTCCGCAGAA
GACTTAACCAATGGCTCATATGATGATATCCTAAATGCTGAGCAACTTCAGAAACTCCTG
TACCTGCTTGAGTCAACTGAAGATCCTGTCATCATCGAAAAAGCTTTGGTCACTCTAGGT
AACAATGCAGCCTTTTCAGCCAACCAAGTCATTATTCGTGAATTGGGTGGTATTACAATT
GTCGGAAGCCAAATCAATAATCCCAACCAGAGTATTAAAGAGAAAGCTTTAAATGCACTG
AATAACCTGAGTGTGAATGTTGAAAATCAAATCAAGATTAAGGTGTACGTTAATCAAGTC
TGCGAGGACGTCTTGTCTGGTCCCCTGAACTCGGCCGTGCAGCTGGCTGGACTGAGGCTG
TTGACAAACATGACAGTTACCAATGACCACCAGCACATGCTGAGCACCTACATTGCAGAC
CTGTTCCACGTGTTGCTCACGGGAAATGGAAGCACCAAGGTTCAAGTTTTGAAACTGCTG
TTGAATTTGTCTGAAAACCCAGCCATGACAGATGGACTCCTTGGTGCCCAGGTGGATTCA
TCATTCCTTTCCCTTTTCGATGGCCACGTAGCAAAGGAAATTCTTGTTCGAGTTCTCACA
CTGTTTCAGAATATAGATAACTGCCTCAAAAAGGAAGGTCGTTTAGCTCTTCAGCCAGCT
TTCCCTGAAGGTTCTCTGTTTTACCTGTTATATGGAGACGAATGTGCCCAGAAAATGAGA
GCGTTAGTTTATCACCATGACGCGGACGTGAAGGAAAAGGTAACGATGATACCAAAATTC
TAATTGGTCGGTCGTGTTTTTCCAGGAAGTAGTGCAGTCTAGAAGTAATACACATAAACT
TCTCATCTTTCACCTTCCTTACAAAGAGATTCTTGCGATTGCTGAAATTAAACCAGTAAA
TAGCATGTTTCATCATTAACACAGCTACTACCTGCCATGGTCTTCTGGTTTATTCTGGAT
CATTTTATTGACTTCAAATGAGTATAAGAGCTTATTCTCAAACCATTTTCTTTCTTTGTA
TTTTGCTTTTTGCTAAGCTAGTTATTTCCTCTACATGGCACAACAGTGACCCTTTTATGT
ATAGCTACGCTTCCACTGTTGGAAGTGATCTGCAGTTACTCATCTGGGACGGCATTAGCA
CCATCCTAGGAATGGCTTTGTTCTTTTAGTAATGATGAGATCTGTACTTGCAAGCCGACC
TGCCACACTGCTTTCAAGTCTGTTCTAATCATGAAACCCTATTTTAGCCCATGCAAACTG
TAACCTGTTAGGAGAAGTGTTTCCTAGTACTCACCCACTCCCATTCAAGATTTGTATAAC
ATACTGGGATCAGTCAAAATCCATCCAGAGGCAATTGGTTAAATCAGTTATCTAGTCTTT
AAAAAGAATGAAGCAAGTTTGAATGTGCTGATGTGGAAAGACATCCATGAAATATGGTTG
TTTTTAAAATACATGTAAAAAAACTGTGTAATGTGACCCCATGTGTGTTTTTTTTAAGTG
AAGAAAATTATGCTTATATATGAATGACACAAGTGTTCTGTCCATATATAAGTGTCTTGG
TATATGGAGAGTGATACCACCCTCCTGGGAATAGGGCTGGAGAGGGAGGAAGTAACTTTT
CTATGATCAACAACTTCTACTGTTTGAATTTTTTACTCTGAGCAGAAATTTTTATACTTT
TTTAAATAAAGAAAAAAAGTCTCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTTTCTCTCGCGGCTGCTTGAGCTCGGGCGGCGAAGGGTCTCGCTGGCTTCAGACCCTG
CCCGCCAGGCCCAGCGCTGCGCGCAGCCCCAGCGAGAGCATGGGCGGCGCCCGGGACGTG
GGCTGGGTGGCGGCGGGCCTGGTCCTTGCGGCCGGTGCCTGCTATTGCATTTACAGGCTG
ACGCGGGGCCAGCGGCGAGGTGCCCGTCGGGTTGGACTGCGCCCCTCGCGGTCCGCAGAA
GACTTAACCAATGGCTCATATGATGATATCCTAAATGCTGAGCAACTTCAGAAACTCCTG
TACCTGCTTGAGTCAACTGAAGATCCTGTCATCATCGAAAAAGCTTTGGTCACTCTAGGT
AACAATGCAGCCTTTTCAGCCAACCAAGTCATTATTCGTGAATTGGGTGGTATTACAATT
GTCGGAAGCCAAATCAATAATCCCAACCAGAGTATTAAAGAGAAAGCTTTAAATGCACTG
AATAACCTGAGTGTGAATGTTGAAAATCAAATCAAGATTAAGGTGTACGTTAATCAAGTC
TGCGAGGACGTCTTGTCTGGTCCCCTGAACTCGGCCGTGCAGCTGGCTGGACTGAGGCTG
TTGACAAACATGACAGTTACCAATGACCACCAGCACATGCTGAGCACCTACATTGCAGAC
CTGTTCCACGTGTTGCTCACGGGAAATGGAAGCACCAAGGTTCAAGTTTTGAAACTGCTG
TTGAATTTGTCTGAAAACCCAGCCATGACAGATGGACTCCTTGGTGCCCAGGTGGATTCA
TCATTCCTTTCCCTTTTCGATGGCCACGTAGCAAAGGAAATTCTTGTTCGAGTTCTCACA
CTGTTTCAGAATATAGATAACTGCCTCAAAAAGGAAGGTCGTTTAGCTCTTCAGCCAGCT
TTCCCTGAAGGTTCTCTGTTTTACCTGTTATATGGAGACGAATGTGCCCAGAAAATGAGA
GCGTTAGTTTATCACCATGACGCGGACGTGAAGGAAAAGGTAACGATGATACCAAAATTC
TAATTGGTCGGTCGTGTTTTTCCAGGAAGTAGTGCAGTCTAGAAGTAATACACATAAACT
TCTCATCTTTCACCTTCCTTACAAAGAGATTCTTGCGATTGCTGAAATTAAACCAGTAAA
TAGCATGTTTCATCATTAACACAGCTACTACCTGCCATGGTCTTCTGGTTTATTCTGGAT
CATTTTATTGACTTCAAATGAGTATAAGAGCTTATTCTCAAACCATTTTCTTTCTTTGTA
TTTTGCTTTTTGCTAAGCTAGTTATTTCCTCTACATGGCACAACAGTGACCCTTTTATGT
ATAGCTACGCTTCCACTGTTGGAAGTGATCTGCAGTTACTCATCTGGGACGGCATTAGCA
CCATCCTAGGAATGGCTTTGTTCTTTTAGTAATGATGAGATCTGTACTTGCAAGCCGACC
TGCCACACTGCTTTCAAGTCTGTTCTAATCATGAAACCCTATTTTAGCCCATGCAAACTG
TAACCTGTTAGGAGAAGTGTTTCCTAGTACTCACCCACTCCCATTCAAGATTTGTATAAC
ATACTGGGATCAGTCAAAATCCATCCAGAGGCAATTGGTTAAATCAGTTATCTAGTCTTT
AAAAAGAATGAAGCAAGTTTGAATGTGCTGATGTGGAAAGACATCCATGAAATATGGTTG
TTTTTAAAATACATGTAAAAAAACTGTGTAATGTGACCCCATGTGTGTTTTTTTTAAGTG
AAGAAAATTATGCTTATATATGAATGACACAAGTGTTCTGTCCATATATAAGTGTCTTGG
TATATGGAGAGTGATACCACCCTCCTGGGAATAGGGCTGGAGAGGGAGGAAGTAACTTTT
CTATGATCAACAACTTCTACTGTTTGAATTTTTTACTCTGAGCAGAAATTTTTATACTTT
TTTAAATAAAGAAAAAAAGTCTCA
|
|
gi|61877045|ref|XP_583087.1| |
Protein identifier
|
gi|61877045|ref|XP_583087.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
261-1026, gnl|bosTau2|chr18 (20275492-20274726) |
|
261-1026, gnl|Hg17|chrX (100717583-100716818) |
|
261-1026, gnl|Mm7|chrX (129524503-129523738) |
| |
|
1431-1735, gnl|bosTau2|chr1 (95350159-95349830) |
|
1431-1735, gnl|canFam2|chrX (117192788-117192469) |
|
1431-1735, gnl|dasNov1|scaffold_83013 (578-1007) |
|
1431-1735, gnl|echTel1|scaffold_262157 (31108-30788) |
|
1431-1735, gnl|hg17|chr5 (73031501-73031844) |
|
1431-1735, gnl|Hg17|chr5 (73031506-73031842) |
|
1431-1735, gnl|loxAfr1|scaffold_11446 (69801-69477) |
|
1431-1735, gnl|oryCun1|scaffold_173013 (43194-43526) |
|
1431-1735, gnl|panTro1|chr4 (42433439-42433096) |
|
1431-1735, gnl|rheMac2|chr6 (69893856-69894195) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
261-1026, gnl|bosTau2|chr18 (20275492-20274726) |
|
261-1026, gnl|Hg17|chrX (100717583-100716818) |
|
261-1026, gnl|Mm7|chrX (129524503-129523738) |
| |
|
1431-1735, gnl|bosTau2|chr1 (95350159-95349830) |
|
1431-1735, gnl|canFam2|chrX (117192788-117192469) |
|
1431-1735, gnl|dasNov1|scaffold_83013 (578-1007) |
|
1431-1735, gnl|echTel1|scaffold_262157 (31108-30788) |
|
1431-1735, gnl|hg17|chr5 (73031501-73031844) |
|
1431-1735, gnl|Hg17|chr5 (73031506-73031842) |
|
1431-1735, gnl|loxAfr1|scaffold_11446 (69801-69477) |
|
1431-1735, gnl|oryCun1|scaffold_173013 (43194-43526) |
|
1431-1735, gnl|panTro1|chr4 (42433439-42433096) |
|
1431-1735, gnl|rheMac2|chr6 (69893856-69894195) |
|
cbr (8.95828) |
|
gul (0.887942) |
|
mgp (0.692042) |
|
sug (0.636456) |
|
fhi (0.508733) |
|
bla (0.497389) |
|
fat (0.442282) |
|
pla (0.401016) |
|
col (0.390016) |
|
ova (0.387397) |
|
nlu (0.383362) |
|
tra (0.369276) |
|
rec (0.346141) |
|
eye (0.341006) |
|
vin (0.332557) |
|
mga (0.32041) |
|
spl (0.286369) |
|
kid (0.259471) |
|
ret (0.257467) |
|
thg (0.253582) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
jca (0.22792) |
|
cty (0.20816) |
|
tes (0.207814) |
|
hea (0.204499) |
|
eje (0.197668) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
nje (0.16592) |
|
fco (0.157208) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
liv (0.146284) |
|
lin (0.145603) |
|
che (0.136314) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
cly (0.120642) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
cbr (8.95828) |
|
gul (0.887942) |
|
mgp (0.692042) |
|
sug (0.636456) |
|
fhi (0.508733) |
|
bla (0.497389) |
|
fat (0.442282) |
|
pla (0.401016) |
|
col (0.390016) |
|
ova (0.387397) |
|
nlu (0.383362) |
|
tra (0.369276) |
|
rec (0.346141) |
|
eye (0.341006) |
|
vin (0.332557) |
|
mga (0.32041) |
|
spl (0.286369) |
|
kid (0.259471) |
|
ret (0.257467) |
|
thg (0.253582) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
jca (0.22792) |
|
cty (0.20816) |
|
tes (0.207814) |
|
hea (0.204499) |
|
eje (0.197668) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
nje (0.16592) |
|
fco (0.157208) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
liv (0.146284) |
|
lin (0.145603) |
|
che (0.136314) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
cly (0.120642) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
cbl (0.114797) |
|
spc (0.113366) |
|
ldo (0.0970026) |
