Non-Coding RNA Search

Ss1.1-Thy1-THY010064A10.5

Sequence:


               
               ACCCCGCCGGCGCGCCCGCCTGCCCGTCGGTCCGTCCGTCCCGTCCCGCGGCCGCCGTAC
CCGCCAGCAATGAGCTCCACGCAGTTCAACAAGGGGCCCTCGTACGGGCTCTCGGCCGAG
GTCAAGAACCGGCTCCTGTCCAAATACGACCCTCAGAAGGAGGCAGAGCTCCGCAGCTGG
ATTGAGGGACTTACTGGCCTGTCCATTGGCCCCGACTTCCAGAAGGGTCTGAAGGATGGG
ATCATCTTGTGCACACTCATGAATAAGCTGCAGCCGGGCTCAGTCCCCAAGATCAACCGC
TCCATGCAGAACTGGCACCAGCTAGAAAACCTCTCCAACTTCATCAAGGCCATGGTCAGC
TATGGCATGAACCCCGTGGACCTGTTCGAAGCCAACGACCTGTTTGAGAGTGGGAACATG
ACACAGGTGCAAGTGTCTCTTCTCGCCCTGGCTGGGAAGGCCAAGACAAAGGGGCTGCAG
AGTGACGTGGACATCGGCGTCAAGTACTCGGAGAAGCAGCAGCGGAACTTTGACGATGCC
ACCATGAAGGCGGGCCAGTGCGTCATCGGGCTGCAGATGGGCACCAACAAATGTGCCAGC
CAGTCGGGCATGACGGCTTATGGCACCAGAAGGCATCTGTACGACCCCAAGAACCATATC
CTGCCCCCCATGGACCACTCGACCATCAGCCTCCAGATGGGCACAAACAAGTGTGCCAGC
CAGGTGGGCATGACTGCTCCAGGGACCCGGCGGCACATCTACGACACCAAGCTGGGGACA
GACAAATGTGACAATTCCTCCATGTCTCTGCAGATGGGCTACACACAGGGCGCCAACCAG
AGTGGCCAGGTTTTTGGCCTGGGCCGGCAGATATATGACCCCAAGTACTGCCCTCAAGGC
CCGGCAGCCGATGGGGCTCCAGCAGCTGCTGGTGACTGCCCAGGCCCTGGAGAGTCTCCA
GAGTACCCCCCCTACTACCAGGAGGAGGCGGGCTACTGAAGTGCTTCTGCAAGCTCTTCC
CCCCCCATTGCCCCATGTGGGTTTTGGGGTTTTTCCATGTTTTTGTCTTGTTTTTCTACA
TAGCTGAATGCTACCAGCTGAGGGTCTTGGGGGAAGAGGGGAAGGCCTTGTCCAGTTGCA
TATGGGCTGGGGGTCAGGCTTTGGGCCAAACTGTGGGGCAGGGAGAAGAAACCCAGGTAG
GGAGGGGTCTGGCCCCCAGTGGTTTCCGGTTGCTTCTTCCCCTCTTCTCTTTTCTCTGCT
GATCAGTTTGTGGTTTCTATACCCATACAAGTTTCAGGTAGTTTTAGTGAAATGAAAATA
CTTTTTTTTCAGGGGGGTGGGGGAGGTGTTAGGAAGGAAGTAGGTCCTCTGGGAGAAGGC
CAGGCCATAGTCCCCAAATATTTTAGGCCTTATGATGTACTAGATTTCCCTAGGATCCTT
AGACCACCAACTCTAGCCCTCCCAGGTGCCCAGTGGGGACACTGAGGCCCAGAGAGGACA
GTGGAGTTCTGAGTAACTGAGGCAAAGCCAGACCCCTCCCAATACCTGATTCCACCCCCC
CACCAAGTACTGCACAGGGACCCCCTCCTGGAGGCCCTCCCTGGGACCAGCCCCTGCCCC
AGAGCTCTGGGATCAAGAAATAATGTGAAATACCGACTGTGGACCAAAGGAAATAAAACC
TCTTTTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCGCCGGCGCGCCCGCCTGCCCGTCGGTCCGTCCGTCCCGTCCCGCGGCCGCCGTAC
CCGCCAGCAATGAGCTCCACGCAGTTCAACAAGGGGCCCTCGTACGGGCTCTCGGCCGAG
GTCAAGAACCGGCTCCTGTCCAAATACGACCCTCAGAAGGAGGCAGAGCTCCGCAGCTGG
ATTGAGGGACTTACTGGCCTGTCCATTGGCCCCGACTTCCAGAAGGGTCTGAAGGATGGG
ATCATCTTGTGCACACTCATGAATAAGCTGCAGCCGGGCTCAGTCCCCAAGATCAACCGC
TCCATGCAGAACTGGCACCAGCTAGAAAACCTCTCCAACTTCATCAAGGCCATGGTCAGC
TATGGCATGAACCCCGTGGACCTGTTCGAAGCCAACGACCTGTTTGAGAGTGGGAACATG
ACACAGGTGCAAGTGTCTCTTCTCGCCCTGGCTGGGAAGGCCAAGACAAAGGGGCTGCAG
AGTGACGTGGACATCGGCGTCAAGTACTCGGAGAAGCAGCAGCGGAACTTTGACGATGCC
ACCATGAAGGCGGGCCAGTGCGTCATCGGGCTGCAGATGGGCACCAACAAATGTGCCAGC
CAGTCGGGCATGACGGCTTATGGCACCAGAAGGCATCTGTACGACCCCAAGAACCATATC
CTGCCCCCCATGGACCACTCGACCATCAGCCTCCAGATGGGCACAAACAAGTGTGCCAGC
CAGGTGGGCATGACTGCTCCAGGGACCCGGCGGCACATCTACGACACCAAGCTGGGGACA
GACAAATGTGACAATTCCTCCATGTCTCTGCAGATGGGCTACACACAGGGCGCCAACCAG
AGTGGCCAGGTTTTTGGCCTGGGCCGGCAGATATATGACCCCAAGTACTGCCCTCAAGGC
CCGGCAGCCGATGGGGCTCCAGCAGCTGCTGGTGACTGCCCAGGCCCTGGAGAGTCTCCA
GAGTACCCCCCCTACTACCAGGAGGAGGCGGGCTACTGAAGTGCTTCTGCAAGCTCTTCC
CCCCCCATTGCCCCATGTGGGTTTTGGGGTTTTTCCATGTTTTTGTCTTGTTTTTCTACA
TAGCTGAATGCTACCAGCTGAGGGTCTTGGGGGAAGAGGGGAAGGCCTTGTCCAGTTGCA
TATGGGCTGGGGGTCAGGCTTTGGGCCAAACTGTGGGGCAGGGAGAAGAAACCCAGGTAG
GGAGGGGTCTGGCCCCCAGTGGTTTCCGGTTGCTTCTTCCCCTCTTCTCTTTTCTCTGCT
GATCAGTTTGTGGTTTCTATACCCATACAAGTTTCAGGTAGTTTTAGTGAAATGAAAATA
CTTTTTTTTCAGGGGGGTGGGGGAGGTGTTAGGAAGGAAGTAGGTCCTCTGGGAGAAGGC
CAGGCCATAGTCCCCAAATATTTTAGGCCTTATGATGTACTAGATTTCCCTAGGATCCTT
AGACCACCAACTCTAGCCCTCCCAGGTGCCCAGTGGGGACACTGAGGCCCAGAGAGGACA
GTGGAGTTCTGAGTAACTGAGGCAAAGCCAGACCCCTCCCAATACCTGATTCCACCCCCC
CACCAAGTACTGCACAGGGACCCCCTCCTGGAGGCCCTCCCTGGGACCAGCCCCTGCCCC
AGAGCTCTGGGATCAAGAAATAATGTGAAATACCGACTGTGGACCAAAGGAAATAAAACC
TCTTTTTAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CLP2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               CLP2_PIG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1155-1345, - strand, RNAz p=0.985631
               

               
               1372-1529, - strand, RNAz p=0.669992

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1155-1345, - strand, RNAz p=0.985631
               

               
               1372-1529, - strand, RNAz p=0.669992

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               60-902, gnl|bosTau2|chr16 (5073931-5073091)
               

               
               60-902, gnl|Hg17|chr6 (111286125-111286956)
               

               
               60-902, gnl|Mm7|chr19 (34324983-34325824)
               


               
               1155-1686, gnl|bosTau2|chr16 (5072860-5072321)
               

               
               1155-1686, gnl|Hg17|chr6 (111287302-111288206)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-902, gnl|bosTau2|chr16 (5073931-5073091)
               

               
               60-902, gnl|Hg17|chr6 (111286125-111286956)
               

               
               60-902, gnl|Mm7|chr19 (34324983-34325824)
               


               
               1155-1686, gnl|bosTau2|chr16 (5072860-5072321)
               

               
               1155-1686, gnl|Hg17|chr6 (111287302-111288206)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               elu (0.770713)
               

               
               pty (0.570858)
               

               
               eep (0.490256)
               

               
               csp (0.483559)
               

               
               nlu (0.383362)
               

               
               med (0.348756)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               pty (0.570858)
               

               
               eep (0.490256)
               

               
               csp (0.483559)
               

               
               nlu (0.383362)
               

               
               med (0.348756)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cag (0.151194)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

	1155-1345, - strand, RNAz p=0.985631
	1372-1529, - strand, RNAz p=0.669992

	60-902, gnl\|bosTau2\|chr16 (5073931-5073091)
	60-902, gnl\|Hg17\|chr6 (111286125-111286956)
	60-902, gnl\|Mm7\|chr19 (34324983-34325824)

	1155-1686, gnl\|bosTau2\|chr16 (5072860-5072321)
	1155-1686, gnl\|Hg17\|chr6 (111287302-111288206)

	elu (0.770713)
	pty (0.570858)
	eep (0.490256)
	csp (0.483559)
	nlu (0.383362)
	med (0.348756)
	lnt (0.284616)
	nmm (0.265604)
	cly (0.241284)
	eru (0.240096)
	mas (0.210305)
	fty (0.17584)
	ill (0.175593)
	duo (0.172801)
	cag (0.151194)
	nca (0.136874)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	nbm (0.0993246)