Ss1.1-Thy1-THY010065A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGCGGTGCCAAGATGGACGCCTTACGAGCTCGGGAGCAGCTCCGGCGGCGATACCTCT TTCCCCCGGACGCGGAGGTTCCGCTGGATCGCGACAACTACCCCAGGCCGGAAACCTCTT CAGCTGTTGAGAAAAAGGAGAAACCTCTTCCAAGACTCAATATCCATTCTGGATTCTGGA TTTTGGCATGCATTGTTGTGACCTATTATGTTGATTTCTTTAAAACCGTTAAAGAAAACT TTCACACCAGTAGCTGGTTCCTCTTTGGCGGTGCCTTGTTACTTGTTAGCTTATCAATTG CATTCTACTGCATATTCTATCTGGAGTGGTATCGAGGAATCGAAGATTATGATATCAAAT ACCCAACGTTGATACCTGTGACAACTGCTACTTTTATTGTAGCAGGAATTTGCTTCAATG CTGCCCTCTGGCACGTGTGGTCGTTTTTCACCCCACTGCTGCTCTTTACCCAGTTTATGG GGGTTGTGATGCTGATCTCACTCCTCGGGTGATCGCTGAAGGACTAAGGGCATATCAGTT TAAAGTGAATGGCTACTGTCCTGCGAGCTGAAAGCACCACACAGAATGGAAACCCTACAG TGTGTTTTTGCGTCTATGAAATGAGTGGGTTCCTTGGAAAAAAATGGAACTTTTATAGCT CGGTGGTTGAAATCAGAATAAATTATATTTCATTTGCCTGTTGCTGAACTCAAGTGATTA TTGAAATTTTCAGATTCAAAATAGAAGACAGAAATAACTAATTTACAGTGTTAATGTTTG GATCATTGGAGAAGCTATTGGTGTAAGAATGTAAAGAAATTTTCATTATGGTTGCATAGT GTCTGCCCAGTATTGTAGAGAAGTTGTTCACTCTGTCATTTACGAGATAGCAGTTCCTTG TGTAAGATGACCAGGCGTGTATATAGAGGGGTGATGGTGTCATGTGCCTTTAACCAAGCC TCAGCAATGACGATATAATTTCATTTTTACAGTCGTTTTATTAGGAGGACCAATTGAAAG GATTTTGTGTTTTCCCATCACTTGAGATTTTATCACTGTGTGCATTATTGGGTTTTTAGC ATTTGTCTAACATATGAACTTTTAATCATTGTAAGTATGTGTAATTTTTTCTTAATATTT AAATAAAGTATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGCGGTGCCAAGATGGACGCCTTACGAGCTCGGGAGCAGCTCCGGCGGCGATACCTCT TTCCCCCGGACGCGGAGGTTCCGCTGGATCGCGACAACTACCCCAGGCCGGAAACCTCTT CAGCTGTTGAGAAAAAGGAGAAACCTCTTCCAAGACTCAATATCCATTCTGGATTCTGGA TTTTGGCATGCATTGTTGTGACCTATTATGTTGATTTCTTTAAAACCGTTAAAGAAAACT TTCACACCAGTAGCTGGTTCCTCTTTGGCGGTGCCTTGTTACTTGTTAGCTTATCAATTG CATTCTACTGCATATTCTATCTGGAGTGGTATCGAGGAATCGAAGATTATGATATCAAAT ACCCAACGTTGATACCTGTGACAACTGCTACTTTTATTGTAGCAGGAATTTGCTTCAATG CTGCCCTCTGGCACGTGTGGTCGTTTTTCACCCCACTGCTGCTCTTTACCCAGTTTATGG GGGTTGTGATGCTGATCTCACTCCTCGGGTGATCGCTGAAGGACTAAGGGCATATCAGTT TAAAGTGAATGGCTACTGTCCTGCGAGCTGAAAGCACCACACAGAATGGAAACCCTACAG TGTGTTTTTGCGTCTATGAAATGAGTGGGTTCCTTGGAAAAAAATGGAACTTTTATAGCT CGGTGGTTGAAATCAGAATAAATTATATTTCATTTGCCTGTTGCTGAACTCAAGTGATTA TTGAAATTTTCAGATTCAAAATAGAAGACAGAAATAACTAATTTACAGTGTTAATGTTTG GATCATTGGAGAAGCTATTGGTGTAAGAATGTAAAGAAATTTTCATTATGGTTGCATAGT GTCTGCCCAGTATTGTAGAGAAGTTGTTCACTCTGTCATTTACGAGATAGCAGTTCCTTG TGTAAGATGACCAGGCGTGTATATAGAGGGGTGATGGTGTCATGTGCCTTTAACCAAGCC TCAGCAATGACGATATAATTTCATTTTTACAGTCGTTTTATTAGGAGGACCAATTGAAAG GATTTTGTGTTTTCCCATCACTTGAGATTTTATCACTGTGTGCATTATTGGGTTTTTAGC ATTTGTCTAACATATGAACTTTTAATCATTGTAAGTATGTGTAATTTTTTCTTAATATTT AAATAAAGTATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 111-253, gnl|bosTau2|chr6 (59999678-59999820) | |
| 111-253, gnl|Hg17|chr4 (4366143-4366001) | |
| 111-253, gnl|Mm7|chr5 (37343392-37343534) | |
| 412-522, gnl|bosTau2|chr6 (60010796-60010906) | |
| 412-522, gnl|canFam2|chr3 (72519155-72519052) | |
| 412-522, gnl|canFam2|chr3 (72519012-72519118) | |
| 412-522, gnl|danRer3|chr19 (59444890-59444818) | |
| 412-522, gnl|galGal2|chr4 (78832777-78832675) | |
| 412-522, gnl|hg17|chr19 (44813769-44813878) | |
| 412-522, gnl|hg17|chr2 (91188374-91188477) | |
| 412-522, gnl|Hg17|chr4 (4357735-4357625) | |
| 412-522, gnl|loxAfr1|scaffold_82274 (8112-8203) | |
| 412-522, gnl|loxAfr1|scaffold_82274 (8248-8136) | |
| 412-522, gnl|mm7|chr5 (37348539-37348642) | |
| 412-522, gnl|mm7|chr5 (37348681-37348575) | |
| 412-522, gnl|Mm7|chr5 (37348574-37348681) | |
| 412-522, gnl|oryCun1|scaffold_130981 (3272-3163) | |
| 412-522, gnl|oryCun1|scaffold_130981 (3118-3230) | |
| 412-522, gnl|panTro1|chr20 (41771299-41771190) | |
| 412-522, gnl|panTro1|chr3 (4366444-4366341) | |
| 412-522, gnl|rheMac2|chr19 (45944676-45944564) | |
| 412-522, gnl|rheMac2|chr5 (4589474-4589576) | |
| 412-522, gnl|rn3|chr14 (77823750-77823647) | |
| 412-522, gnl|rn3|chr14 (77823610-77823714) | |
| 412-522, gnl|tetNig1|chr11 (983975-983886) | |
| 550-1152, gnl|bosTau2|chr6 (60012599-60013197) | |
| 550-1152, gnl|Hg17|chr4 (4355917-4355352) | |
| 550-1152, gnl|Mm7|chr5 (37350472-37351011) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-253, gnl|bosTau2|chr6 (59999678-59999820) | |
| 111-253, gnl|Hg17|chr4 (4366143-4366001) | |
| 111-253, gnl|Mm7|chr5 (37343392-37343534) | |
| 412-522, gnl|bosTau2|chr6 (60010796-60010906) | |
| 412-522, gnl|canFam2|chr3 (72519155-72519052) | |
| 412-522, gnl|canFam2|chr3 (72519012-72519118) | |
| 412-522, gnl|danRer3|chr19 (59444890-59444818) | |
| 412-522, gnl|galGal2|chr4 (78832777-78832675) | |
| 412-522, gnl|hg17|chr19 (44813769-44813878) | |
| 412-522, gnl|hg17|chr2 (91188374-91188477) | |
| 412-522, gnl|Hg17|chr4 (4357735-4357625) | |
| 412-522, gnl|loxAfr1|scaffold_82274 (8112-8203) | |
| 412-522, gnl|loxAfr1|scaffold_82274 (8248-8136) | |
| 412-522, gnl|mm7|chr5 (37348539-37348642) | |
| 412-522, gnl|mm7|chr5 (37348681-37348575) | |
| 412-522, gnl|Mm7|chr5 (37348574-37348681) | |
| 412-522, gnl|oryCun1|scaffold_130981 (3272-3163) | |
| 412-522, gnl|oryCun1|scaffold_130981 (3118-3230) | |
| 412-522, gnl|panTro1|chr20 (41771299-41771190) | |
| 412-522, gnl|panTro1|chr3 (4366444-4366341) | |
| 412-522, gnl|rheMac2|chr19 (45944676-45944564) | |
| 412-522, gnl|rheMac2|chr5 (4589474-4589576) | |
| 412-522, gnl|rn3|chr14 (77823750-77823647) | |
| 412-522, gnl|rn3|chr14 (77823610-77823714) | |
| 412-522, gnl|tetNig1|chr11 (983975-983886) | |
| 550-1152, gnl|bosTau2|chr6 (60012599-60013197) | |
| 550-1152, gnl|Hg17|chr4 (4355917-4355352) | |
| 550-1152, gnl|Mm7|chr5 (37350472-37351011) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| lin (0.582411) | |
| pro (0.512033) | |
| tra (0.369276) | |
| fco (0.314416) | |
| lun (0.300978) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nca (0.136874) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.582411) | |
| pro (0.512033) | |
| tra (0.369276) | |
| fco (0.314416) | |
| lun (0.300978) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| ute (0.265569) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| col (0.195008) | |
| sag (0.182715) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nca (0.136874) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) |