Ss1.1-Thy1-THY010065B08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGGAGAGGCTCGGCCGGGCAGCCCAGCGCAGCAGCTGCCTCCAAGGCCATTCCGGAGT TAAGGGAAGGAAAGGCAAGGCAAGTTACAAGATAAAAGAAGTCGACGGAAGCCTCGGATA TAAAAAAGGAGAAGAGGGCTTTAAAAAAAATTTTTTTTATACGTCTGGCCTTGACTTCCT GTCTCTCTACGAGCCCTTTTGTTCCCCCTGCCATGAGCAGGGATTAGACCCTCATTTGGG GACCATGGTGTTACCTTCGCGATTGCACTGGATCAGGAACAGGCCATGGAGGGACAGGAT CCGGAGGCGGCAGCTCAACCGACTACCAGCCAGACTCCCAGAAATCATGTTGGTAGGATC CCAGTCCTTCTCGCCTGGAGGGCCCAATGGGATTATCAGAAGCCAGTCCTTCGCAGGGTT CAGTGGCCTTCAGGAGAGGCGATCCAGATGTAACTCCTTCATTGAAAATTCCTCCGCTCT CAAGAAGCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGACATAAAAACAACAGCCC TCCCAAAGAGCCTCAGCCTAAAAGGGTGGAAGAGGTCTACAGGGCCTTGAAAAATGGACT TGATGAGTATCTGGAGGTTCATCAGACGGAGCTGGACAAGTTGACAGCTCAGTTAAAAGA TATGAGAAGAAACTCTCGCCTGGGTGTGCTGTATGACCTAGACAAGCAAATTAAAACCAT TGAAAGATACATGAGACGCCTGGAGTTCCACATTAGTAAGGTAGATGAACTCTATGAAGC TTATTGTATCCAAAGACGCCTGCAGGATGGTGCCAGCAAAATGAAGCTAGCCTTTGCCAC CTCTCCCGCCAGCAGAGCTGCCCGGGAGAGCCTGTCGGAGATCAACCGGAGTTACAAGGA GTACACGGAGAACATGTGTGCCATCGAAGCGGAGCTGGAGAAACAGCTGGGAGAGTTCTC CATCAAGATGAAAGGTCTGGCCGGTTTTGCTCGCCTCTGTCCCGGGGACCAATATGAAAT TTTCATGAAGTACGGCCGACAGAGGTGGAAACTGAAAGGCAGAATCGAAGTCAATGGCAA ACAGAGCTGGGATGGAGAGGAAATGGTGTTCCTGCCCTTGATTGTTGGATTGATTTCCAT CAAGGTCACAGAACTCAAAGGGCTGGCAACTCACCTCCTGGTCGGCAGCGTGACCTGCGA GACCAAAGAGCTGTTTGCAGCCCGACCTCAGGTGGTGGCCGTGGACATCAATGACCTTGG CACCATCAAACTCAACCTGGAAATCACCTGGTATCCTTTCGACGTGGAGGACATGACCCC ATCTTCGGGGGCTGGGAACAAGGCGGCCGCCCTGCAGAGAAGAATGTCCATGTACAGCCA GGGCACCCCGGAAACGCCCACCTTCAAAGACCACGCCTTCTTTTCTAATCTACCGGATGA CATCTTTGAAAATGGGAAGGCAGCCGAGGAGAAAATGCCACTGTCCCTCAGCTTCAGCGA CCTGCCCCACGGGGACAGCACCCTCCCCGCCAGCCCGGCCGGCTCTCTGCCCAGCGCGGG CTCGGCCAATCCAGAAATCACCGTCACCCCCGCCGAGCTGAACCCCGCCAGCCTGGCCTC CCAGCAGGAGGGCACCGATGACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGGAGAGGCTCGGCCGGGCAGCCCAGCGCAGCAGCTGCCTCCAAGGCCATTCCGGAGT TAAGGGAAGGAAAGGCAAGGCAAGTTACAAGATAAAAGAAGTCGACGGAAGCCTCGGATA TAAAAAAGGAGAAGAGGGCTTTAAAAAAAATTTTTTTTATACGTCTGGCCTTGACTTCCT GTCTCTCTACGAGCCCTTTTGTTCCCCCTGCCATGAGCAGGGATTAGACCCTCATTTGGG GACCATGGTGTTACCTTCGCGATTGCACTGGATCAGGAACAGGCCATGGAGGGACAGGAT CCGGAGGCGGCAGCTCAACCGACTACCAGCCAGACTCCCAGAAATCATGTTGGTAGGATC CCAGTCCTTCTCGCCTGGAGGGCCCAATGGGATTATCAGAAGCCAGTCCTTCGCAGGGTT CAGTGGCCTTCAGGAGAGGCGATCCAGATGTAACTCCTTCATTGAAAATTCCTCCGCTCT CAAGAAGCCTCAGGCCAAACTGAAGAAAATGCACAATTTAGGACATAAAAACAACAGCCC TCCCAAAGAGCCTCAGCCTAAAAGGGTGGAAGAGGTCTACAGGGCCTTGAAAAATGGACT TGATGAGTATCTGGAGGTTCATCAGACGGAGCTGGACAAGTTGACAGCTCAGTTAAAAGA TATGAGAAGAAACTCTCGCCTGGGTGTGCTGTATGACCTAGACAAGCAAATTAAAACCAT TGAAAGATACATGAGACGCCTGGAGTTCCACATTAGTAAGGTAGATGAACTCTATGAAGC TTATTGTATCCAAAGACGCCTGCAGGATGGTGCCAGCAAAATGAAGCTAGCCTTTGCCAC CTCTCCCGCCAGCAGAGCTGCCCGGGAGAGCCTGTCGGAGATCAACCGGAGTTACAAGGA GTACACGGAGAACATGTGTGCCATCGAAGCGGAGCTGGAGAAACAGCTGGGAGAGTTCTC CATCAAGATGAAAGGTCTGGCCGGTTTTGCTCGCCTCTGTCCCGGGGACCAATATGAAAT TTTCATGAAGTACGGCCGACAGAGGTGGAAACTGAAAGGCAGAATCGAAGTCAATGGCAA ACAGAGCTGGGATGGAGAGGAAATGGTGTTCCTGCCCTTGATTGTTGGATTGATTTCCAT CAAGGTCACAGAACTCAAAGGGCTGGCAACTCACCTCCTGGTCGGCAGCGTGACCTGCGA GACCAAAGAGCTGTTTGCAGCCCGACCTCAGGTGGTGGCCGTGGACATCAATGACCTTGG CACCATCAAACTCAACCTGGAAATCACCTGGTATCCTTTCGACGTGGAGGACATGACCCC ATCTTCGGGGGCTGGGAACAAGGCGGCCGCCCTGCAGAGAAGAATGTCCATGTACAGCCA GGGCACCCCGGAAACGCCCACCTTCAAAGACCACGCCTTCTTTTCTAATCTACCGGATGA CATCTTTGAAAATGGGAAGGCAGCCGAGGAGAAAATGCCACTGTCCCTCAGCTTCAGCGA CCTGCCCCACGGGGACAGCACCCTCCCCGCCAGCCCGGCCGGCTCTCTGCCCAGCGCGGG CTCGGCCAATCCAGAAATCACCGTCACCCCCGCCGAGCTGAACCCCGCCAGCCTGGCCTC CCAGCAGGAGGGCACCGATGACTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1143-1261, + strand, RNAz p=0.725706 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1143-1261, + strand, RNAz p=0.725706 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 7-321, gnl|bosTau2|chr23 (30654762-30655091) | |
| 7-321, gnl|Hg17|chr6 (25150391-25150057) | |
| 7-321, gnl|Mm7|chr13 (23867151-23867490) | |
| 446-603, gnl|bosTau2|chr23 (26681780-26681623) | |
| 446-603, gnl|Hg17|chr6 (24982008-24981851) | |
| 446-603, gnl|Mm7|chr13 (24037555-24037712) | |
| 759-910, gnl|bosTau2|chr23 (26673816-26673665) | |
| 759-910, gnl|Hg17|chr6 (24973659-24973508) | |
| 759-910, gnl|Mm7|chr13 (24043524-24043675) | |
| 1143-1293, gnl|bosTau2|chr23 (26662264-26662114) | |
| 1143-1293, gnl|canFam2|chr35 (25874452-25874619) | |
| 1143-1293, gnl|danRer3|chr19 (44756602-44756443) | |
| 1143-1293, gnl|dasNov1|scaffold_7336 (91990-91822) | |
| 1143-1293, gnl|echTel1|scaffold_208046 (10501-10334) | |
| 1143-1293, gnl|fr1|chrUn (145913749-145913583) | |
| 1143-1293, gnl|galGal2|chr2 (90071635-90071477) | |
| 1143-1293, gnl|hg17|chr6 (24957994-24958162) | |
| 1143-1293, gnl|Hg17|chr6 (24958159-24958009) | |
| 1143-1293, gnl|loxAfr1|scaffold_7179 (4798-4639) | |
| 1143-1293, gnl|mm7|chr13 (24060085-24059916) | |
| 1143-1293, gnl|Mm7|chr13 (24059917-24060067) | |
| 1143-1293, gnl|monDom2|scaffold_3 (115372219-115372387) | |
| 1143-1293, gnl|oryCun1|scaffold_104576 (4601-4767) | |
| 1143-1293, gnl|panTro1|chr5 (25400894-25401062) | |
| 1143-1293, gnl|rheMac2|chr4 (24852435-24852603) | |
| 1143-1293, gnl|rn3|chr17 (47440036-47440204) | |
| 1143-1293, gnl|tetNig1|chr21_random (1674795-1674637) | |
| 1143-1293, gnl|xenTro1|scaffold_185 (1166521-1166682) | |
| 1294-1423, gnl|bosTau2|chr23 (26660295-26660166) | |
| 1294-1423, gnl|canFam2|chr35 (25872633-25872795) | |
| 1294-1423, gnl|danRer3|chr19 (44757161-44757016) | |
| 1294-1423, gnl|dasNov1|scaffold_7336 (94114-93952) | |
| 1294-1423, gnl|echTel1|scaffold_208046 (11626-11468) | |
| 1294-1423, gnl|fr1|chrUn (145914107-145913967) | |
| 1294-1423, gnl|galGal2|chr2 (90072508-90072356) | |
| 1294-1423, gnl|hg17|chr6 (24956224-24956386) | |
| 1294-1423, gnl|Hg17|chr6 (24956361-24956232) | |
| 1294-1423, gnl|loxAfr1|scaffold_57892 (10399-10557) | |
| 1294-1423, gnl|mm7|chr13 (24061514-24061352) | |
| 1294-1423, gnl|Mm7|chr13 (24061375-24061504) | |
| 1294-1423, gnl|monDom2|scaffold_3 (115368890-115369064) | |
| 1294-1423, gnl|oryCun1|scaffold_3657 (3081-3228) | |
| 1294-1423, gnl|panTro1|chr5 (25399111-25399273) | |
| 1294-1423, gnl|rheMac2|chr4 (24850639-24850801) | |
| 1294-1423, gnl|rn3|chr17 (47438555-47438717) | |
| 1294-1423, gnl|tetNig1|chr21_random (1675042-1674901) | |
| 1294-1423, gnl|xenTro1|scaffold_185 (1164694-1164844) | |
| 1424-1644, gnl|bosTau2|chr23 (26656203-26655983) | |
| 1424-1644, gnl|Hg17|chr6 (24951761-24951547) | |
| 1424-1644, gnl|Mm7|chr13 (24066864-24067084) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-321, gnl|bosTau2|chr23 (30654762-30655091) | |
| 7-321, gnl|Hg17|chr6 (25150391-25150057) | |
| 7-321, gnl|Mm7|chr13 (23867151-23867490) | |
| 446-603, gnl|bosTau2|chr23 (26681780-26681623) | |
| 446-603, gnl|Hg17|chr6 (24982008-24981851) | |
| 446-603, gnl|Mm7|chr13 (24037555-24037712) | |
| 759-910, gnl|bosTau2|chr23 (26673816-26673665) | |
| 759-910, gnl|Hg17|chr6 (24973659-24973508) | |
| 759-910, gnl|Mm7|chr13 (24043524-24043675) | |
| 1143-1293, gnl|bosTau2|chr23 (26662264-26662114) | |
| 1143-1293, gnl|canFam2|chr35 (25874452-25874619) | |
| 1143-1293, gnl|danRer3|chr19 (44756602-44756443) | |
| 1143-1293, gnl|dasNov1|scaffold_7336 (91990-91822) | |
| 1143-1293, gnl|echTel1|scaffold_208046 (10501-10334) | |
| 1143-1293, gnl|fr1|chrUn (145913749-145913583) | |
| 1143-1293, gnl|galGal2|chr2 (90071635-90071477) | |
| 1143-1293, gnl|hg17|chr6 (24957994-24958162) | |
| 1143-1293, gnl|Hg17|chr6 (24958159-24958009) | |
| 1143-1293, gnl|loxAfr1|scaffold_7179 (4798-4639) | |
| 1143-1293, gnl|mm7|chr13 (24060085-24059916) | |
| 1143-1293, gnl|Mm7|chr13 (24059917-24060067) | |
| 1143-1293, gnl|monDom2|scaffold_3 (115372219-115372387) | |
| 1143-1293, gnl|oryCun1|scaffold_104576 (4601-4767) | |
| 1143-1293, gnl|panTro1|chr5 (25400894-25401062) | |
| 1143-1293, gnl|rheMac2|chr4 (24852435-24852603) | |
| 1143-1293, gnl|rn3|chr17 (47440036-47440204) | |
| 1143-1293, gnl|tetNig1|chr21_random (1674795-1674637) | |
| 1143-1293, gnl|xenTro1|scaffold_185 (1166521-1166682) | |
| 1294-1423, gnl|bosTau2|chr23 (26660295-26660166) | |
| 1294-1423, gnl|canFam2|chr35 (25872633-25872795) | |
| 1294-1423, gnl|danRer3|chr19 (44757161-44757016) | |
| 1294-1423, gnl|dasNov1|scaffold_7336 (94114-93952) | |
| 1294-1423, gnl|echTel1|scaffold_208046 (11626-11468) | |
| 1294-1423, gnl|fr1|chrUn (145914107-145913967) | |
| 1294-1423, gnl|galGal2|chr2 (90072508-90072356) | |
| 1294-1423, gnl|hg17|chr6 (24956224-24956386) | |
| 1294-1423, gnl|Hg17|chr6 (24956361-24956232) | |
| 1294-1423, gnl|loxAfr1|scaffold_57892 (10399-10557) | |
| 1294-1423, gnl|mm7|chr13 (24061514-24061352) | |
| 1294-1423, gnl|Mm7|chr13 (24061375-24061504) | |
| 1294-1423, gnl|monDom2|scaffold_3 (115368890-115369064) | |
| 1294-1423, gnl|oryCun1|scaffold_3657 (3081-3228) | |
| 1294-1423, gnl|panTro1|chr5 (25399111-25399273) | |
| 1294-1423, gnl|rheMac2|chr4 (24850639-24850801) | |
| 1294-1423, gnl|rn3|chr17 (47438555-47438717) | |
| 1294-1423, gnl|tetNig1|chr21_random (1675042-1674901) | |
| 1294-1423, gnl|xenTro1|scaffold_185 (1164694-1164844) | |
| 1424-1644, gnl|bosTau2|chr23 (26656203-26655983) | |
| 1424-1644, gnl|Hg17|chr6 (24951761-24951547) | |
| 1424-1644, gnl|Mm7|chr13 (24066864-24067084) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) |