Non-Coding RNA Search

Ss1.1-Thy1-THY010065B11.5

Sequence:


               
               ATGTGATCGATCAAGATGGCGTCGGCCAGCTCCTTGTGGCTCTTGGCTCTTGCTTTCCTG
CCGGGATCCTGCTTAGCCTTGGCGTTGGGGCATGTCGACCCTCCAGCGCCGCTGCCGCTC
GTGATCTGGCATGGGATGGGAGACAGCTGTTGTAATCCCTTAAGCATGGGTGCTATTAAG
AAAATGGTCGAGAAGAAAATACCTGGAATTTACGTCTTATCTTTAGAGATTGGGAAGACC
CTGGTAGAGGATGTGGAGAACAGCTTCTTTTTGAATGTCAACTCCCAAGTAACAACAGTG
TGTCAGATTCTTGCTAAGGATCCTAAGTTACAACAAGGCTACAATGCTATGGGATTCTCC
CAGGGCGGCCAATTTCTGAGGGCAGTGGCTCAGAGATGCCCCATACCTCCCATGATCAAT
CTCATCTCAATTGGGGGACAACATCAAGGTGTTTTTGGATTCCCTCGGTGCCCAGGAGAG
AGCTCTCACATCTGTGACTTTATCAGAAAAACTCTGAATGCTGGGGCTTACAACAAAGCT
ATACAAGAACGCCTGGTGCAAGCGGAATACTGGCATGACCCCATAAAGGAGGATGTTTAC
CGCAACCACAGCATTTTCCTGGCAGATATTAATCAGGAGAGAAGTATCAACGAGTCCTAC
AAGAAGAACCTGATGGCCCTGAAGAAGTTTGTGATGGTGAAATTTCTCAATGATTCCATT
GTGGACCCCGTAGATTCTGAGTGGTTTGGATTTTACAGAAGTGGCCAAGCCAAGGAAACC
ATTCCCTTACAGGAGAGTACCCTGTACACACAGGACCGTCTTGGGCTAAGGGAAATGGAC
AAGGCAGGACGGCTGGTGTTCCTTGGTCTAGAAGGGGACCATCTTCAACTGCCTGAAGAA
TGGTTTTATGCCCACATCATACCCTTCCTTGAGTGAAGCCCTTGTAATTGGCACTAGAGC
TCAGGAAACCCCTCCTCACACTTCCAAGCCAGTTTCCTACGTGCCCAAACCCGAGCTCAG
ATCCAGCCAGCAACTAATCCTTCTCCCTTGTCTTCATCTAACATGCCCTGCTCGGAAAGA
ACTAAGATACGAATCTTATCCTTTGTCTCATCCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGATCGATCAAGATGGCGTCGGCCAGCTCCTTGTGGCTCTTGGCTCTTGCTTTCCTG
CCGGGATCCTGCTTAGCCTTGGCGTTGGGGCATGTCGACCCTCCAGCGCCGCTGCCGCTC
GTGATCTGGCATGGGATGGGAGACAGCTGTTGTAATCCCTTAAGCATGGGTGCTATTAAG
AAAATGGTCGAGAAGAAAATACCTGGAATTTACGTCTTATCTTTAGAGATTGGGAAGACC
CTGGTAGAGGATGTGGAGAACAGCTTCTTTTTGAATGTCAACTCCCAAGTAACAACAGTG
TGTCAGATTCTTGCTAAGGATCCTAAGTTACAACAAGGCTACAATGCTATGGGATTCTCC
CAGGGCGGCCAATTTCTGAGGGCAGTGGCTCAGAGATGCCCCATACCTCCCATGATCAAT
CTCATCTCAATTGGGGGACAACATCAAGGTGTTTTTGGATTCCCTCGGTGCCCAGGAGAG
AGCTCTCACATCTGTGACTTTATCAGAAAAACTCTGAATGCTGGGGCTTACAACAAAGCT
ATACAAGAACGCCTGGTGCAAGCGGAATACTGGCATGACCCCATAAAGGAGGATGTTTAC
CGCAACCACAGCATTTTCCTGGCAGATATTAATCAGGAGAGAAGTATCAACGAGTCCTAC
AAGAAGAACCTGATGGCCCTGAAGAAGTTTGTGATGGTGAAATTTCTCAATGATTCCATT
GTGGACCCCGTAGATTCTGAGTGGTTTGGATTTTACAGAAGTGGCCAAGCCAAGGAAACC
ATTCCCTTACAGGAGAGTACCCTGTACACACAGGACCGTCTTGGGCTAAGGGAAATGGAC
AAGGCAGGACGGCTGGTGTTCCTTGGTCTAGAAGGGGACCATCTTCAACTGCCTGAAGAA
TGGTTTTATGCCCACATCATACCCTTCCTTGAGTGAAGCCCTTGTAATTGGCACTAGAGC
TCAGGAAACCCCTCCTCACACTTCCAAGCCAGTTTCCTACGTGCCCAAACCCGAGCTCAG
ATCCAGCCAGCAACTAATCCTTCTCCCTTGTCTTCATCTAACATGCCCTGCTCGGAAAGA
ACTAAGATACGAATCTTATCCTTTGTCTCATCCTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1083059|pir||B54717

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1083059|pir||B54717

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               957-1065, - strand, RNAz p=0.709011

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               957-1065, - strand, RNAz p=0.709011

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               125-1116, gnl|bosTau2|chr10 (45756556-45755589)
               

               
               125-1116, gnl|Hg17|chr1 (40227285-40208646)
               

               
               125-1116, gnl|Mm7|chr4 (122288638-122302457)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-1116, gnl|bosTau2|chr10 (45756556-45755589)
               

               
               125-1116, gnl|Hg17|chr1 (40227285-40208646)
               

               
               125-1116, gnl|Mm7|chr4 (122288638-122302457)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cki (0.165235)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	125-1116, gnl\|bosTau2\|chr10 (45756556-45755589)
	125-1116, gnl\|Hg17\|chr1 (40227285-40208646)
	125-1116, gnl\|Mm7\|chr4 (122288638-122302457)

	cki (0.165235)
	cov (0.132153)
	tra (0.123092)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)