Non-Coding RNA Search

Ss1.1-Thy1-THY010065D02.5

Sequence:


               
               AGCTTCCTCCTGGCGGAGCTGCATTTCCAGCCACCTCCGCAGCCCTGCCCTCGCGCGCCG
AGCCGTTCCGGCGGTGCCGCTGGAGGCGCGGAGCCCGCCCGGCGCGCCCAGCCCTGCAGC
TCCGGCCGGGGCGGAGGCCGCCGGACCGCGGAGATGCGGGGCGGGGGCAGGGCGCGGGGA
TTACGGTGGGATCATGGCAGGGCTGGGCTCCGATCCCTGGTGGAAGAAAACCCTTTACTT
GACCGGGGGAGCTTTGCTGGCCGCAGCTGCGTATCTGCTCCACGAACTCCTGGTCATTAG
GAAACAGCAGGAGATTGACTCCAAAGATGCTATTATTTTGCATCAGTTTGCAAGACCTAA
CAATGGTGTCCCCAGTTTATCTCCGTTCTGCTTGAAAATGGAAACTTATTTAAGGATGGC
TGACTTACCCTATCAGAACTATTTTGGTGGAAAACTCTCTGCTCAAGGAAAAATGCCTTG
GATTGAATATAATCATGAAAAAGTTTCTGGGACAGAATTCATAATTGACTTTCTGGAAGA
GAAACTTGGAGTGAATTTAAACAAAAACCTTGGTCCTCATGAAAGAGCCATCTCCAGGGC
GGTGACTAAGATGGTGGAGGAGCATTTCTACTGGTGATAAGAAGTACATCATGGGGCCCA
AGCTTTCCACTCTCGATGCCACTGTGTTTGGACACTTGGCACAGGCAATGTGGACCTTAC
CTGGGACGAGACCTGAGCGGCTGATAAAAGGTGAGCTGATCAATCTGGCCATGTACTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTCCTCCTGGCGGAGCTGCATTTCCAGCCACCTCCGCAGCCCTGCCCTCGCGCGCCG
AGCCGTTCCGGCGGTGCCGCTGGAGGCGCGGAGCCCGCCCGGCGCGCCCAGCCCTGCAGC
TCCGGCCGGGGCGGAGGCCGCCGGACCGCGGAGATGCGGGGCGGGGGCAGGGCGCGGGGA
TTACGGTGGGATCATGGCAGGGCTGGGCTCCGATCCCTGGTGGAAGAAAACCCTTTACTT
GACCGGGGGAGCTTTGCTGGCCGCAGCTGCGTATCTGCTCCACGAACTCCTGGTCATTAG
GAAACAGCAGGAGATTGACTCCAAAGATGCTATTATTTTGCATCAGTTTGCAAGACCTAA
CAATGGTGTCCCCAGTTTATCTCCGTTCTGCTTGAAAATGGAAACTTATTTAAGGATGGC
TGACTTACCCTATCAGAACTATTTTGGTGGAAAACTCTCTGCTCAAGGAAAAATGCCTTG
GATTGAATATAATCATGAAAAAGTTTCTGGGACAGAATTCATAATTGACTTTCTGGAAGA
GAAACTTGGAGTGAATTTAAACAAAAACCTTGGTCCTCATGAAAGAGCCATCTCCAGGGC
GGTGACTAAGATGGTGGAGGAGCATTTCTACTGGTGATAAGAAGTACATCATGGGGCCCA
AGCTTTCCACTCTCGATGCCACTGTGTTTGGACACTTGGCACAGGCAATGTGGACCTTAC
CTGGGACGAGACCTGAGCGGCTGATAAAAGGTGAGCTGATCAATCTGGCCATGTACTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61830920|ref|XP_581194.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61830920|ref|XP_581194.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               464-583, + strand, RNAz p=0.647102

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               464-583, + strand, RNAz p=0.647102

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC011583, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC011583, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-179, gnl|bosTau2|chr9 (33623203-33623023)
               

               
               1-179, gnl|Hg17|chr6 (99904509-99904327)
               


               
               425-637, gnl|bosTau2|chr9 (33607282-33607069)
               

               
               425-637, gnl|canFam2|chr12 (60552105-60552326)
               

               
               425-637, gnl|danRer3|chr16 (43746764-43746972)
               

               
               425-637, gnl|dasNov1|scaffold_10623 (43370-43590)
               

               
               425-637, gnl|echTel1|scaffold_102647 (682-461)
               

               
               425-637, gnl|fr1|chrUn (110879274-110879068)
               

               
               425-637, gnl|galGal2|chr3 (69891158-69890950)
               

               
               425-637, gnl|hg17|chr6 (99887942-99888164)
               

               
               425-637, gnl|Hg17|chr6 (99888157-99887944)
               

               
               425-637, gnl|loxAfr1|scaffold_11872 (29610-29389)
               

               
               425-637, gnl|mm7|chr4 (21952553-21952338)
               

               
               425-637, gnl|Mm7|chr4 (21952337-21952549)
               

               
               425-637, gnl|monDom2|scaffold_0 (124586407-124586188)
               

               
               425-637, gnl|oryCun1|scaffold_192692 (11505-11728)
               

               
               425-637, gnl|panTro1|chr5 (101872777-101872999)
               

               
               425-637, gnl|rheMac2|chr4 (95273207-95273429)
               

               
               425-637, gnl|rn3|chr5 (36697284-36697066)
               

               
               425-637, gnl|tetNig1|chr8 (1386297-1386501)
               

               
               425-637, gnl|xenTro1|scaffold_164 (1882087-1882303)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-179, gnl|bosTau2|chr9 (33623203-33623023)
               

               
               1-179, gnl|Hg17|chr6 (99904509-99904327)
               


               
               425-637, gnl|bosTau2|chr9 (33607282-33607069)
               

               
               425-637, gnl|canFam2|chr12 (60552105-60552326)
               

               
               425-637, gnl|danRer3|chr16 (43746764-43746972)
               

               
               425-637, gnl|dasNov1|scaffold_10623 (43370-43590)
               

               
               425-637, gnl|echTel1|scaffold_102647 (682-461)
               

               
               425-637, gnl|fr1|chrUn (110879274-110879068)
               

               
               425-637, gnl|galGal2|chr3 (69891158-69890950)
               

               
               425-637, gnl|hg17|chr6 (99887942-99888164)
               

               
               425-637, gnl|Hg17|chr6 (99888157-99887944)
               

               
               425-637, gnl|loxAfr1|scaffold_11872 (29610-29389)
               

               
               425-637, gnl|mm7|chr4 (21952553-21952338)
               

               
               425-637, gnl|Mm7|chr4 (21952337-21952549)
               

               
               425-637, gnl|monDom2|scaffold_0 (124586407-124586188)
               

               
               425-637, gnl|oryCun1|scaffold_192692 (11505-11728)
               

               
               425-637, gnl|panTro1|chr5 (101872777-101872999)
               

               
               425-637, gnl|rheMac2|chr4 (95273207-95273429)
               

               
               425-637, gnl|rn3|chr5 (36697284-36697066)
               

               
               425-637, gnl|tetNig1|chr8 (1386297-1386501)
               

               
               425-637, gnl|xenTro1|scaffold_164 (1882087-1882303)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.543183)
               

               
               cga (0.279096)
               

               
               pty (0.142714)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               cga (0.279096)
               

               
               pty (0.142714)

	1-179, gnl\|bosTau2\|chr9 (33623203-33623023)
	1-179, gnl\|Hg17\|chr6 (99904509-99904327)

	425-637, gnl\|bosTau2\|chr9 (33607282-33607069)
	425-637, gnl\|canFam2\|chr12 (60552105-60552326)
	425-637, gnl\|danRer3\|chr16 (43746764-43746972)
	425-637, gnl\|dasNov1\|scaffold_10623 (43370-43590)
	425-637, gnl\|echTel1\|scaffold_102647 (682-461)
	425-637, gnl\|fr1\|chrUn (110879274-110879068)
	425-637, gnl\|galGal2\|chr3 (69891158-69890950)
	425-637, gnl\|hg17\|chr6 (99887942-99888164)
	425-637, gnl\|Hg17\|chr6 (99888157-99887944)
	425-637, gnl\|loxAfr1\|scaffold_11872 (29610-29389)
	425-637, gnl\|mm7\|chr4 (21952553-21952338)
	425-637, gnl\|Mm7\|chr4 (21952337-21952549)
	425-637, gnl\|monDom2\|scaffold_0 (124586407-124586188)
	425-637, gnl\|oryCun1\|scaffold_192692 (11505-11728)
	425-637, gnl\|panTro1\|chr5 (101872777-101872999)
	425-637, gnl\|rheMac2\|chr4 (95273207-95273429)
	425-637, gnl\|rn3\|chr5 (36697284-36697066)
	425-637, gnl\|tetNig1\|chr8 (1386297-1386501)
	425-637, gnl\|xenTro1\|scaffold_164 (1882087-1882303)