Ss1.1-Thy1-THY010065H02.5
|
GCTGCTCCAAGCACCTGTTCCGTGTCTCATTTTCCTGGCTGCCGGTCTGTTCTAGCCGCG
TGGTTACTTTGTCGTCCGAGGGGTGCTCCCCCCTCTTTGCGGTCGGGTACTAGCGACCTG
AGGTGGCGCCAAGGCGGCAACCTCAGGCAGGCCGGGGGGACCCCCACGTGCGCAGCCTGG
AAGCCTGGCAAGCCCTGCGCCCTCCCCTGCTCCCGGCCGGTCTGCTGCTCCAAGCACCTG
TTCCGTGTCTCATTTTCCTGGCTGCCGGTCTGTTCTAGCCGCGTGGTTACTTTGTCGTCC
GAGGGGTGCTCCCCCCTCTTTGCGGTCGGGTACTAGCGACCTGAGGTGGCGCCAAGGCGG
CAACCTCAGGCAGGCCGGGGGGACCCCCACGTGCGCAGCCTGGAAGCCTGGCAAGCCCTG
CGCCCTCCCCTGCTCCCGGCCCACCCGGGGGCCACCGACTCCACTCCCGGAGAGTGTGGC
TTCCGAGGGCATGTGGTCCGGGCTCAGCGCTTTCGGTTCTCGGAGGAGCCGAGCCTGGGA
GCCGAGGGGGCAGTGCTGGAGGTCCACGTCCCGCAGGTCTTGCATCTTCAGTATGGAATG
TATGTTTGGCCCTGTGCTGTGGTCCTGGCCCAGTACCTGTGGTTTCACAGAGGATCTCTG
CCCGGCAAGGCTGTCTTAGAGATTGGAGCTGGAGTGAGCCTTCCGGGAATTGTGGCTGCA
AAATGTGGTGCTGAAGTAATACTGTCAGACAGTGCAGAGCTGCCTCACTGCCTGGAAATC
TGTCAGCGTAGCTGCCAAATGAATAACCTGCCTCAAGTGCAGGTCATAGGACTCACATGG
GGTCATGTATCGCAGGCTCTTTTGGCTCTACCACCACAAGACATTATCCTTGCATCTGAT
GTTTTCTTTGAACCAGAAGATTTTGAAGACATTTTAACTACAGTTTACTTTTTGATGCAG
AAAAACCCCAAAGTCCAATTATGGTCTACTTACCAGGTGAGAAGTGCTGACTGGTCACTT
GAAGCTTTGCTCTACAAGTGGGACATGAAATGTGTCCACATTCCTTTGGAGTCTTTTGGT
GCAGATGAGGAGGCTATAGCAGAATCTGCCCTCCCAGGAAGACATACTGTTGAAATGCTG
GTTATCTCCCTTGCAAAGGACAGTCTCTGAATTACACCTACAAGCTGTTTCAGGACAGCG
TCAATGCTGATTAGCAACCTGGCAAGCCAACTGTGTGGCTCAGGCCACTTCAGCTTAAGT
ACAAGCAGTAGATTTGAAAATGGTCCTATCTGATTGTGAGGCATCACTTAACCATTAAAA
TGAAAATTAAAACACTTCTAAGAAAAAAGACTTGGATTCTTCCTAAGTCATTAAAATAGG
ACATAAATTAGGTTGAGAGAAGAGGCTACCCACGACCTCAACAAAAGTGCTACCTATGAG
CACTGAGTTTAGGGATGGATAGCGGGTGCTAAACTGGCATTCCACTTTTTAACTTAGGGA
GAAAAATCAGCTCCTAGACATTTCACTTTCATACTTTACAGTAAGTTACATTTGAGAAAA
CTACACAGGTCTTTCAAATAAATGGGGGGAAAAAAGACCAAGACATATTTTTTTTTTTTT
TAACACCAAGAAAACGTTTTAATTAAACTACAGAAACAATGGTTATAGTACAGAATATTC
ATGAGCAAAAAGATACACCATGTTTTAAGTACTTACAAAGTTACAAACCATTTGTTTGCT
TCCTTAACATTTTCCATTTTAAGTTCATACATGAAGATGATCAGATTTACCATTTTTAAG
GGGGAGAGGAAGAAAAAAAAAAGGTGTATTTATCATCGCTAGATGTGCTCACTGTATGCT
CCGTTATTTATATGCAAGGCCCGGTTGACTGGAAGTGCAGTTGTCAGGCATTTTAATAAA
CTGGACAGCCATTTGTTTCTGCACGACAAGGCATCTTTACACAGGAGCAATCAGGAGAAA
ACAGGAAACAGCCAAGCACTCTGCACTGCAACACGCCACCTTAACAGCTAACCAGCATTA
CTCAACTGCTACACAACTGCGCCTAGTGCACAAAAATACATAAGAGAAGAGATTAGAATT
GTGTTTGGTAAACAATCCTTTCAAAAAAATCAAGTCTTTTCACCTGAAAAGTCTTTATAC
AAATTTGGGTTCAGTTTACCATTTAGACCTGAAGGTAAATAACATATACAAACAAATTTA
CACCAACTTTTGTAGGTTTTTAATTTTAAGGTATGAAGGCAATGTTGAGTCAATCTCTTG
ACAGCTTTAGGCTGTGTGTAATGGCTGCACACTTGTTTCCTTAAAAGTCAGGAGGCCACA
AATTAGGTTACCAATCTGTTTAATTTCAAACAAAAAAAGTCAGCACTATATGAACAAAAA
GGAAATTTTACCTCAAATATCCAAGCCAATAATGAAATCTGAAGTCGTTCACCTCACTAA
ATTACAAGAAATTTGAATAACAGCAACAAAATGGCACATAAAATGATTTTGCCACCTGAG
GCAAAGCTTAAAACAAGTAAAAAGTTAGACAAAATGTTACAAAATAACCTTTTCAATAGC
CAGTTGCTTGTTCCAAGGACTCCTGGATGGACCGAGTACTGAGTCCGTGGTCCTTTTTTC
CCCAAATCTTCCTTTACGTTGCTTGTCGACGCATCTTTTGCTTAAGAGGACACCGCTCCT
TCCTCTTCGGGAGACTTGGGGGGACTCTTGGATCGCGACCTGGACTTGGATTCCCTCTTG
GACGCGGGCGGAGGACTCCTGGACCTAGATCTGGACCTGGACCGCGAGCGAGATCTGGAC
ACCGACGAGGACTTGGACTTGGACCTGCGCGCCGACCTGGACTTGGACGTTGACCGTGAT
CTTGAGCGAGTGCGGGACCGAGACTTGGAGCGGCTGTAGCGAGATCGACTCCGGGACCGG
GACCGGCTCCGACTCCGGGATCGGCTGCGGCGACGCCGCCTAGGGCTGCGGCTCCGACGT
CCGTAGCCGCCGCCCCCGTACCTGCGGGGCGGGGGGCCCCGGCGGCTGTGGTGCGAGTCC
GGGGGGCGGCCGTAGCGCGCCATCTGCACCCGCAGCTCGCGCCCGTCCAGCACGGCCCCG
TCCATGGCGTCCATGGCGTCCTCGGCGTCGCGCTTGTCGTGGAAGCGGACGAAGGCGAAG
CCGCGGGACTCCTTGGTGTAGCGGTCCCGCGGGATGTACACGTCGCCGACGCGCCCGTAC
TTCTCGAACACGCGCCTCAGGGTGTCGGGCGAGGTGCGGTAGGTCAGGTTGTCCACCTTG
AGGGAGGTCATGCCCTCCACATCGGGAGGCGGGCGGCCGTAGCTCATGGCTCTGGAGAGT
CGGGCCGGGGCCCGCGACTGCGCGCCGACGAACTAACGCCCCGGCGGGCCGGCACGATCG
GCTGCGGCGGCGGTGGTTTCCTCTGAGTGGCTCGGCTCGACGCCGCGCCTGTCCTCTGGC
GGTTGGCTTCCGCGTGGGAGCGTTGGGAAAGGCCGGAGCTGAGGCGGCGGAGCCGAGAAG
CCCCCAGCCGGCTCCACCAGAGAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTGCTCCAAGCACCTGTTCCGTGTCTCATTTTCCTGGCTGCCGGTCTGTTCTAGCCGCG
TGGTTACTTTGTCGTCCGAGGGGTGCTCCCCCCTCTTTGCGGTCGGGTACTAGCGACCTG
AGGTGGCGCCAAGGCGGCAACCTCAGGCAGGCCGGGGGGACCCCCACGTGCGCAGCCTGG
AAGCCTGGCAAGCCCTGCGCCCTCCCCTGCTCCCGGCCGGTCTGCTGCTCCAAGCACCTG
TTCCGTGTCTCATTTTCCTGGCTGCCGGTCTGTTCTAGCCGCGTGGTTACTTTGTCGTCC
GAGGGGTGCTCCCCCCTCTTTGCGGTCGGGTACTAGCGACCTGAGGTGGCGCCAAGGCGG
CAACCTCAGGCAGGCCGGGGGGACCCCCACGTGCGCAGCCTGGAAGCCTGGCAAGCCCTG
CGCCCTCCCCTGCTCCCGGCCCACCCGGGGGCCACCGACTCCACTCCCGGAGAGTGTGGC
TTCCGAGGGCATGTGGTCCGGGCTCAGCGCTTTCGGTTCTCGGAGGAGCCGAGCCTGGGA
GCCGAGGGGGCAGTGCTGGAGGTCCACGTCCCGCAGGTCTTGCATCTTCAGTATGGAATG
TATGTTTGGCCCTGTGCTGTGGTCCTGGCCCAGTACCTGTGGTTTCACAGAGGATCTCTG
CCCGGCAAGGCTGTCTTAGAGATTGGAGCTGGAGTGAGCCTTCCGGGAATTGTGGCTGCA
AAATGTGGTGCTGAAGTAATACTGTCAGACAGTGCAGAGCTGCCTCACTGCCTGGAAATC
TGTCAGCGTAGCTGCCAAATGAATAACCTGCCTCAAGTGCAGGTCATAGGACTCACATGG
GGTCATGTATCGCAGGCTCTTTTGGCTCTACCACCACAAGACATTATCCTTGCATCTGAT
GTTTTCTTTGAACCAGAAGATTTTGAAGACATTTTAACTACAGTTTACTTTTTGATGCAG
AAAAACCCCAAAGTCCAATTATGGTCTACTTACCAGGTGAGAAGTGCTGACTGGTCACTT
GAAGCTTTGCTCTACAAGTGGGACATGAAATGTGTCCACATTCCTTTGGAGTCTTTTGGT
GCAGATGAGGAGGCTATAGCAGAATCTGCCCTCCCAGGAAGACATACTGTTGAAATGCTG
GTTATCTCCCTTGCAAAGGACAGTCTCTGAATTACACCTACAAGCTGTTTCAGGACAGCG
TCAATGCTGATTAGCAACCTGGCAAGCCAACTGTGTGGCTCAGGCCACTTCAGCTTAAGT
ACAAGCAGTAGATTTGAAAATGGTCCTATCTGATTGTGAGGCATCACTTAACCATTAAAA
TGAAAATTAAAACACTTCTAAGAAAAAAGACTTGGATTCTTCCTAAGTCATTAAAATAGG
ACATAAATTAGGTTGAGAGAAGAGGCTACCCACGACCTCAACAAAAGTGCTACCTATGAG
CACTGAGTTTAGGGATGGATAGCGGGTGCTAAACTGGCATTCCACTTTTTAACTTAGGGA
GAAAAATCAGCTCCTAGACATTTCACTTTCATACTTTACAGTAAGTTACATTTGAGAAAA
CTACACAGGTCTTTCAAATAAATGGGGGGAAAAAAGACCAAGACATATTTTTTTTTTTTT
TAACACCAAGAAAACGTTTTAATTAAACTACAGAAACAATGGTTATAGTACAGAATATTC
ATGAGCAAAAAGATACACCATGTTTTAAGTACTTACAAAGTTACAAACCATTTGTTTGCT
TCCTTAACATTTTCCATTTTAAGTTCATACATGAAGATGATCAGATTTACCATTTTTAAG
GGGGAGAGGAAGAAAAAAAAAAGGTGTATTTATCATCGCTAGATGTGCTCACTGTATGCT
CCGTTATTTATATGCAAGGCCCGGTTGACTGGAAGTGCAGTTGTCAGGCATTTTAATAAA
CTGGACAGCCATTTGTTTCTGCACGACAAGGCATCTTTACACAGGAGCAATCAGGAGAAA
ACAGGAAACAGCCAAGCACTCTGCACTGCAACACGCCACCTTAACAGCTAACCAGCATTA
CTCAACTGCTACACAACTGCGCCTAGTGCACAAAAATACATAAGAGAAGAGATTAGAATT
GTGTTTGGTAAACAATCCTTTCAAAAAAATCAAGTCTTTTCACCTGAAAAGTCTTTATAC
AAATTTGGGTTCAGTTTACCATTTAGACCTGAAGGTAAATAACATATACAAACAAATTTA
CACCAACTTTTGTAGGTTTTTAATTTTAAGGTATGAAGGCAATGTTGAGTCAATCTCTTG
ACAGCTTTAGGCTGTGTGTAATGGCTGCACACTTGTTTCCTTAAAAGTCAGGAGGCCACA
AATTAGGTTACCAATCTGTTTAATTTCAAACAAAAAAAGTCAGCACTATATGAACAAAAA
GGAAATTTTACCTCAAATATCCAAGCCAATAATGAAATCTGAAGTCGTTCACCTCACTAA
ATTACAAGAAATTTGAATAACAGCAACAAAATGGCACATAAAATGATTTTGCCACCTGAG
GCAAAGCTTAAAACAAGTAAAAAGTTAGACAAAATGTTACAAAATAACCTTTTCAATAGC
CAGTTGCTTGTTCCAAGGACTCCTGGATGGACCGAGTACTGAGTCCGTGGTCCTTTTTTC
CCCAAATCTTCCTTTACGTTGCTTGTCGACGCATCTTTTGCTTAAGAGGACACCGCTCCT
TCCTCTTCGGGAGACTTGGGGGGACTCTTGGATCGCGACCTGGACTTGGATTCCCTCTTG
GACGCGGGCGGAGGACTCCTGGACCTAGATCTGGACCTGGACCGCGAGCGAGATCTGGAC
ACCGACGAGGACTTGGACTTGGACCTGCGCGCCGACCTGGACTTGGACGTTGACCGTGAT
CTTGAGCGAGTGCGGGACCGAGACTTGGAGCGGCTGTAGCGAGATCGACTCCGGGACCGG
GACCGGCTCCGACTCCGGGATCGGCTGCGGCGACGCCGCCTAGGGCTGCGGCTCCGACGT
CCGTAGCCGCCGCCCCCGTACCTGCGGGGCGGGGGGCCCCGGCGGCTGTGGTGCGAGTCC
GGGGGGCGGCCGTAGCGCGCCATCTGCACCCGCAGCTCGCGCCCGTCCAGCACGGCCCCG
TCCATGGCGTCCATGGCGTCCTCGGCGTCGCGCTTGTCGTGGAAGCGGACGAAGGCGAAG
CCGCGGGACTCCTTGGTGTAGCGGTCCCGCGGGATGTACACGTCGCCGACGCGCCCGTAC
TTCTCGAACACGCGCCTCAGGGTGTCGGGCGAGGTGCGGTAGGTCAGGTTGTCCACCTTG
AGGGAGGTCATGCCCTCCACATCGGGAGGCGGGCGGCCGTAGCTCATGGCTCTGGAGAGT
CGGGCCGGGGCCCGCGACTGCGCGCCGACGAACTAACGCCCCGGCGGGCCGGCACGATCG
GCTGCGGCGGCGGTGGTTTCCTCTGAGTGGCTCGGCTCGACGCCGCGCCTGTCCTCTGGC
GGTTGGCTTCCGCGTGGGAGCGTTGGGAAAGGCCGGAGCTGAGGCGGCGGAGCCGAGAAG
CCCCCAGCCGGCTCCACCAGAGAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
210-578, gnl|bosTau2|chr19 (49907842-49907476) |
|
210-578, gnl|canFam2|chr9 (7035318-7034602) |
|
210-578, gnl|dasNov1|scaffold_12055 (17644-18344) |
|
210-578, gnl|echTel1|scaffold_315229 (46980-46303) |
|
210-578, gnl|hg17|chr17 (72234303-72234925) |
|
210-578, gnl|Hg17|chr17 (72234528-72234857) |
|
210-578, gnl|loxAfr1|scaffold_21138 (4-705) |
|
210-578, gnl|mm7|chr11 (116952384-116952863) |
|
210-578, gnl|monDom2|scaffold_18 (4208020-4208757) |
|
210-578, gnl|panTro1|chr19 (75604517-75605140) |
|
210-578, gnl|rheMac2|chr16 (72087129-72087741) |
|
210-578, gnl|rn3|chr10 (106963009-106963488) |
| |
|
680-919, gnl|bosTau2|chr19 (49903263-49903024) |
|
680-919, gnl|Hg17|chr17 (72240653-72240892) |
|
680-919, gnl|Mm7|chr11 (116957944-116958183) |
| |
|
1003-2676, gnl|bosTau2|chr19 (49902706-49901017) |
|
1003-2676, gnl|Hg17|chr17 (72241196-72242837) |
|
1003-2676, gnl|Mm7|chr11 (116958433-116960008) |
| |
|
2953-3564, gnl|bosTau2|chr19 (49899490-49898884) |
|
2953-3564, gnl|Hg17|chr17 (72244427-72245002) |
|
2953-3564, gnl|Mm7|chr11 (116961587-116962129) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
210-578, gnl|bosTau2|chr19 (49907842-49907476) |
|
210-578, gnl|canFam2|chr9 (7035318-7034602) |
|
210-578, gnl|dasNov1|scaffold_12055 (17644-18344) |
|
210-578, gnl|echTel1|scaffold_315229 (46980-46303) |
|
210-578, gnl|hg17|chr17 (72234303-72234925) |
|
210-578, gnl|Hg17|chr17 (72234528-72234857) |
|
210-578, gnl|loxAfr1|scaffold_21138 (4-705) |
|
210-578, gnl|mm7|chr11 (116952384-116952863) |
|
210-578, gnl|monDom2|scaffold_18 (4208020-4208757) |
|
210-578, gnl|panTro1|chr19 (75604517-75605140) |
|
210-578, gnl|rheMac2|chr16 (72087129-72087741) |
|
210-578, gnl|rn3|chr10 (106963009-106963488) |
| |
|
680-919, gnl|bosTau2|chr19 (49903263-49903024) |
|
680-919, gnl|Hg17|chr17 (72240653-72240892) |
|
680-919, gnl|Mm7|chr11 (116957944-116958183) |
| |
|
1003-2676, gnl|bosTau2|chr19 (49902706-49901017) |
|
1003-2676, gnl|Hg17|chr17 (72241196-72242837) |
|
1003-2676, gnl|Mm7|chr11 (116958433-116960008) |
| |
|
2953-3564, gnl|bosTau2|chr19 (49899490-49898884) |
|
2953-3564, gnl|Hg17|chr17 (72244427-72245002) |
|
2953-3564, gnl|Mm7|chr11 (116961587-116962129) |
|
thg (2.40903) |
|
spl (2.29095) |
|
ski (1.76082) |
|
liv (1.75541) |
|
lin (1.31043) |
|
fty (1.23088) |
|
cmu (1.11836) |
|
tra (1.10783) |
|
fat (1.03199) |
|
nje (0.99552) |
|
sag (0.913576) |
|
amn (0.835422) |
|
ecc (0.805246) |
|
lyg (0.798616) |
|
aor (0.781097) |
|
ova (0.774793) |
|
elu (0.770713) |
|
lun (0.752445) |
|
cly (0.723851) |
|
csk (0.70373) |
|
ill (0.702371) |
|
sin (0.69979) |
|
med (0.697512) |
|
rec (0.692281) |
|
spc (0.680195) |
|
kid (0.648677) |
|
ret (0.643666) |
|
sug (0.636456) |
|
ese (0.632511) |
|
bla (0.621736) |
|
tbr (0.616713) |
|
hea (0.613497) |
|
eep (0.61282) |
|
isp (0.601504) |
|
pgl (0.592417) |
|
cte (0.58548) |
|
lnt (0.569233) |
|
duo (0.518403) |
|
pro (0.512033) |
|
mcp (0.511945) |
|
eye (0.511509) |
|
fhi (0.508733) |
|
mgp (0.461361) |
|
cag (0.453583) |
|
cty (0.41632) |
|
ste (0.405625) |
|
nbm (0.397298) |
|
jej (0.395687) |
|
nlu (0.383362) |
|
mgm (0.360685) |
|
eru (0.360144) |
|
gul (0.355177) |
|
vin (0.332557) |
|
nco (0.323468) |
|
csp (0.322373) |
|
mga (0.32041) |
|
sme (0.305437) |
|
eje (0.296501) |
|
ldo (0.291008) |
|
hyp (0.285673) |
|
pty (0.285429) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
cov (0.264306) |
|
cbr (0.255951) |
|
cbe (0.239234) |
|
cbl (0.229595) |
|
ece (0.229305) |
|
mas (0.210305) |
|
col (0.195008) |
|
nep (0.183925) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
fco (0.157208) |
|
cli (0.152812) |
|
bfe (0.149858) |
|
hlv (0.139256) |
|
ute (0.132784) |
|
jca (0.11396) |
|
thg (2.40903) |
|
spl (2.29095) |
|
ski (1.76082) |
|
liv (1.75541) |
|
lin (1.31043) |
|
fty (1.23088) |
|
cmu (1.11836) |
|
tra (1.10783) |
|
fat (1.03199) |
|
nje (0.99552) |
|
sag (0.913576) |
|
amn (0.835422) |
|
ecc (0.805246) |
|
lyg (0.798616) |
|
aor (0.781097) |
|
ova (0.774793) |
|
elu (0.770713) |
|
lun (0.752445) |
|
cly (0.723851) |
|
csk (0.70373) |
|
ill (0.702371) |
|
sin (0.69979) |
|
med (0.697512) |
|
rec (0.692281) |
|
spc (0.680195) |
|
kid (0.648677) |
|
ret (0.643666) |
|
sug (0.636456) |
|
ese (0.632511) |
|
bla (0.621736) |
|
tbr (0.616713) |
|
hea (0.613497) |
|
eep (0.61282) |
|
isp (0.601504) |
|
pgl (0.592417) |
|
cte (0.58548) |
|
lnt (0.569233) |
|
duo (0.518403) |
|
pro (0.512033) |
|
mcp (0.511945) |
|
eye (0.511509) |
|
fhi (0.508733) |
|
mgp (0.461361) |
|
cag (0.453583) |
|
cty (0.41632) |
|
ste (0.405625) |
|
nbm (0.397298) |
|
jej (0.395687) |
|
nlu (0.383362) |
|
mgm (0.360685) |
|
eru (0.360144) |
|
gul (0.355177) |
|
vin (0.332557) |
|
nco (0.323468) |
|
csp (0.322373) |
|
mga (0.32041) |
|
sme (0.305437) |
|
eje (0.296501) |
|
ldo (0.291008) |
|
hyp (0.285673) |
|
pty (0.285429) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
cov (0.264306) |
|
cbr (0.255951) |
|
cbe (0.239234) |
|
cbl (0.229595) |
|
ece (0.229305) |
|
mas (0.210305) |
|
col (0.195008) |
|
nep (0.183925) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
cut (0.169924) |
|
fco (0.157208) |
|
cli (0.152812) |
|
bfe (0.149858) |
|
hlv (0.139256) |
|
ute (0.132784) |
|
jca (0.11396) |
