Non-Coding RNA Search

Ss1.1-Thy1-THY010066C07.5

Sequence:


               
               TCGGTAGAGGCAGAAGGAGGAGGTCGGCCGGGACGTTAAGGTGGCCTGCAGCAGGCTCGT
CGGTGCCCGTTGGCTTCGCTCGTTCCGTGCCTCGTCTCTCCCTGGAAGGGGAGGGGGGCT
TCGACGCCGAGCAGGATCCGCCGCTGTCGTAGTCCCGAGCTTGAAGTCGCTAGGACTTCT
CTCAAGGTTGTGTGCTGAGGAGACTCAGATGTTGGCCTCAGTTCCTAGGCTGAACTCAGC
AGATCGGCCCATGAAAACTTCTGTACTGAGACAAAGGAAAGGATCTGTCAGAAAGCAACA
TCTCTTATCCTGGGCTTGGCGGCAAGGAAGAGGACAGGTGGTGGAAATCCTGCAATCTGA
AAAGCAGACTGAAAGGTGACAAAGAAGCTGAAGATGGGTGGTGGAGAGAGGTATAACATT
CCAGCCCCTCAATCTAGAAATGTTAGTAAGAACCAACAACAGCTTAATAGACAGAAGACC
AAGGATCAGAATTCCCAGATGAAGATTGTTCATAAGAAAAAGGAAAGAGGACATACTTAC
AATTCATCAGCAGCTGCATGGCAAGCCATGCAAAATGGGGGGAAGAACAAAAATTTTCCA
AATAATCAAAATTGGAACTCTAGCTTATCAAGTCCCACCTTACTTTTTAAGTCTCAAACT
AATCAGAACTATGCTGGAGCCAAATTTAGTGAGCCACCGTCACCAAGTGTTCTTCCTAAA
CCACCAAGCCACTGGGTTCCTGTTTCCTTCAATCCTTCCGATAAAGAAATAATGACATTT
CAACTAAAAACCTTACTTAAAGTACAGGTATGAGATAAAGTACTAATGTTCAAAGCTAGT
CAATATTTAGGGATAATTGGCAATTGTTTCAGACTAAATACACAAGGGAATTAATCTGTA
AAATAGCTTGCGTAGAAAATATAATTAGACTTCATCTTTTATGTGTTATGTGCATTGATG
TAATGATAGAATCAGTGCAACTTAACTAAGATTTGTACTTGATTATCAATACTAAATTAA
GTGTTTTCAATGGATTAACCATTTAAATGAAACCAAGTGCAGATTTGGGGAGTGATAAAG
GAATCAACCTTTTCTATTGCTTGTTGGGAAAATTAAGATTATCATTCATGGATCAGTAGG
TTTACTTGTTGAAAGCTGGTGAATCTGATGATAAGCATCAAATTAAAACATACAGGGGTT
GAAAACTAGTTGAATATTGAGTTCAATGTTCTAGAAACATCCAGACCAGTTACATATCAA
CAACCTGATGCACTGCCAAAAAAATGTGAACTTTTTAAAAAGATTATAGTTGTTTTAGTT
AACTATATGGTGTACAGGGCACTAGGGGCTATTAGAATGAAATAGTATACCCCACTGGCC
TTGTATATGACATGCAGTGGATAGATGTCTGCCAACAAAGGCACCGAAATCATTTTTTAT
GGAAATAGTATTTGGTGTTAACCAAGTAGCTTTCAAAATGCATCTTTGTATTATGGCACT
GCACAAGCTATTCTGACAGTGATCTGGCTTCACACCATCCTTGCAAAGCTTGTTTAAAGT
GGGGAGCTGTATAATGTGAAAGTTTTAAGTAGCTAGGAAAGAGCCATGTAAATATATGTA
ATAAACTTGTAGCATATGTAAAATTTTATTGGCATTTATCCTACCAAAATAGAATATTTT
AGTATGAATTTGCTGAATGTAAGACATCGACTTTTTTTATACTATGGCCTAATTTTAAAG
GTCTAAGATAACTTCTTTTAAAAGTTTGCCCTTGTGCTAAAGTGCCAGTGTATGTATATT
ATAATTGATCTCGCTGTAAACTATATTTCAAAGCAAATCTTAGTGTAAGAAGTTTTATAT
AACTGAGGTTTGAAGCTGCTAAAACACTTCCTATTTTTGAGATGTGAAAATGCAGTACGG
GATTATTTTTTCTTTAAGCCCAAAGATTATTAAGGGGTCCCCATAACCCTAAAGATTCAT
TTTGGCTTTCAACAATTTGTGTAACCTATGAGTATAATATACAATGCCAGTGTATTTTTT
TTGTCAAAAGATGTAACCCAGGGGACCACTTAGTGCAAAAGATGTAATTTCTTGCAATAC
CTTAATGACATGTTTTGCCTGCCTTAAAGATAAATGCTAATTATAACAGCTAAATTAAAA
GTGTGTGTGGGGGGGTCTATTTAAAACTTGATTGTAAGTGCCCTACTTTCTGATTTGGCC
GCTTTTGGGGGATTGTTTTTTAAGAGCAGAATTGCTAAATTGTATTTCTCCAAATAACTT
CAGATTAGGTAATATTGCTCAAGTCAAACAATGACACCCTAAAGACATAGTACTCAATGT
ACATCAATGAATTTGAAGCATGAAATTAAAAAAATAAAATTGTTTTTTACCCCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGTAGAGGCAGAAGGAGGAGGTCGGCCGGGACGTTAAGGTGGCCTGCAGCAGGCTCGT
CGGTGCCCGTTGGCTTCGCTCGTTCCGTGCCTCGTCTCTCCCTGGAAGGGGAGGGGGGCT
TCGACGCCGAGCAGGATCCGCCGCTGTCGTAGTCCCGAGCTTGAAGTCGCTAGGACTTCT
CTCAAGGTTGTGTGCTGAGGAGACTCAGATGTTGGCCTCAGTTCCTAGGCTGAACTCAGC
AGATCGGCCCATGAAAACTTCTGTACTGAGACAAAGGAAAGGATCTGTCAGAAAGCAACA
TCTCTTATCCTGGGCTTGGCGGCAAGGAAGAGGACAGGTGGTGGAAATCCTGCAATCTGA
AAAGCAGACTGAAAGGTGACAAAGAAGCTGAAGATGGGTGGTGGAGAGAGGTATAACATT
CCAGCCCCTCAATCTAGAAATGTTAGTAAGAACCAACAACAGCTTAATAGACAGAAGACC
AAGGATCAGAATTCCCAGATGAAGATTGTTCATAAGAAAAAGGAAAGAGGACATACTTAC
AATTCATCAGCAGCTGCATGGCAAGCCATGCAAAATGGGGGGAAGAACAAAAATTTTCCA
AATAATCAAAATTGGAACTCTAGCTTATCAAGTCCCACCTTACTTTTTAAGTCTCAAACT
AATCAGAACTATGCTGGAGCCAAATTTAGTGAGCCACCGTCACCAAGTGTTCTTCCTAAA
CCACCAAGCCACTGGGTTCCTGTTTCCTTCAATCCTTCCGATAAAGAAATAATGACATTT
CAACTAAAAACCTTACTTAAAGTACAGGTATGAGATAAAGTACTAATGTTCAAAGCTAGT
CAATATTTAGGGATAATTGGCAATTGTTTCAGACTAAATACACAAGGGAATTAATCTGTA
AAATAGCTTGCGTAGAAAATATAATTAGACTTCATCTTTTATGTGTTATGTGCATTGATG
TAATGATAGAATCAGTGCAACTTAACTAAGATTTGTACTTGATTATCAATACTAAATTAA
GTGTTTTCAATGGATTAACCATTTAAATGAAACCAAGTGCAGATTTGGGGAGTGATAAAG
GAATCAACCTTTTCTATTGCTTGTTGGGAAAATTAAGATTATCATTCATGGATCAGTAGG
TTTACTTGTTGAAAGCTGGTGAATCTGATGATAAGCATCAAATTAAAACATACAGGGGTT
GAAAACTAGTTGAATATTGAGTTCAATGTTCTAGAAACATCCAGACCAGTTACATATCAA
CAACCTGATGCACTGCCAAAAAAATGTGAACTTTTTAAAAAGATTATAGTTGTTTTAGTT
AACTATATGGTGTACAGGGCACTAGGGGCTATTAGAATGAAATAGTATACCCCACTGGCC
TTGTATATGACATGCAGTGGATAGATGTCTGCCAACAAAGGCACCGAAATCATTTTTTAT
GGAAATAGTATTTGGTGTTAACCAAGTAGCTTTCAAAATGCATCTTTGTATTATGGCACT
GCACAAGCTATTCTGACAGTGATCTGGCTTCACACCATCCTTGCAAAGCTTGTTTAAAGT
GGGGAGCTGTATAATGTGAAAGTTTTAAGTAGCTAGGAAAGAGCCATGTAAATATATGTA
ATAAACTTGTAGCATATGTAAAATTTTATTGGCATTTATCCTACCAAAATAGAATATTTT
AGTATGAATTTGCTGAATGTAAGACATCGACTTTTTTTATACTATGGCCTAATTTTAAAG
GTCTAAGATAACTTCTTTTAAAAGTTTGCCCTTGTGCTAAAGTGCCAGTGTATGTATATT
ATAATTGATCTCGCTGTAAACTATATTTCAAAGCAAATCTTAGTGTAAGAAGTTTTATAT
AACTGAGGTTTGAAGCTGCTAAAACACTTCCTATTTTTGAGATGTGAAAATGCAGTACGG
GATTATTTTTTCTTTAAGCCCAAAGATTATTAAGGGGTCCCCATAACCCTAAAGATTCAT
TTTGGCTTTCAACAATTTGTGTAACCTATGAGTATAATATACAATGCCAGTGTATTTTTT
TTGTCAAAAGATGTAACCCAGGGGACCACTTAGTGCAAAAGATGTAATTTCTTGCAATAC
CTTAATGACATGTTTTGCCTGCCTTAAAGATAAATGCTAATTATAACAGCTAAATTAAAA
GTGTGTGTGGGGGGGTCTATTTAAAACTTGATTGTAAGTGCCCTACTTTCTGATTTGGCC
GCTTTTGGGGGATTGTTTTTTAAGAGCAGAATTGCTAAATTGTATTTCTCCAAATAACTT
CAGATTAGGTAATATTGCTCAAGTCAAACAATGACACCCTAAAGACATAGTACTCAATGT
ACATCAATGAATTTGAAGCATGAAATTAAAAAAATAAAATTGTTTTTTACCCCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               PNRC2_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               PNRC2_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               184-303, - strand, RNAz p=0.52316
               

               
               344-463, - strand, RNAz p=0.700315
               

               
               1300-1442, + strand, RNAz p=0.998714

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-303, - strand, RNAz p=0.52316
               

               
               344-463, - strand, RNAz p=0.700315
               

               
               1300-1442, + strand, RNAz p=0.998714

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               82-1977, gnl|bosTau2|chr2 (83898560-83896620)
               

               
               82-1977, gnl|Hg17|chr1 (118033500-118031660)
               


               
               2037-2393, gnl|bosTau2|chr13 (6951990-6951606)
               

               
               2037-2393, gnl|Hg17|chr5 (110517236-110516871)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-1977, gnl|bosTau2|chr2 (83898560-83896620)
               

               
               82-1977, gnl|Hg17|chr1 (118033500-118031660)
               


               
               2037-2393, gnl|bosTau2|chr13 (6951990-6951606)
               

               
               2037-2393, gnl|Hg17|chr5 (110517236-110516871)

Expressed library(ies): 52 entry(ies)

More info

Expressed library(ies): 52 entry(ies)

Help | Less info


               
               thg (1.64828)
               

               
               mgm (1.08206)
               

               
               mgp (0.922722)
               

               
               kid (0.908147)
               

               
               liv (0.877706)
               

               
               mga (0.801025)
               

               
               ret (0.7724)
               

               
               lin (0.728014)
               

               
               rec (0.692281)
               

               
               nje (0.66368)
               

               
               tra (0.61546)
               

               
               ova (0.516529)
               

               
               hea (0.408998)
               

               
               nbm (0.397298)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (1.64828)
               

               
               mgm (1.08206)
               

               
               mgp (0.922722)
               

               
               kid (0.908147)
               

               
               liv (0.877706)
               

               
               mga (0.801025)
               

               
               ret (0.7724)
               

               
               lin (0.728014)
               

               
               rec (0.692281)
               

               
               nje (0.66368)
               

               
               tra (0.61546)
               

               
               ova (0.516529)
               

               
               hea (0.408998)
               

               
               nbm (0.397298)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               sug (0.381874)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	184-303, - strand, RNAz p=0.52316
	344-463, - strand, RNAz p=0.700315
	1300-1442, + strand, RNAz p=0.998714

	82-1977, gnl\|bosTau2\|chr2 (83898560-83896620)
	82-1977, gnl\|Hg17\|chr1 (118033500-118031660)

	2037-2393, gnl\|bosTau2\|chr13 (6951990-6951606)
	2037-2393, gnl\|Hg17\|chr5 (110517236-110516871)

	thg (1.64828)
	mgm (1.08206)
	mgp (0.922722)
	kid (0.908147)
	liv (0.877706)
	mga (0.801025)
	ret (0.7724)
	lin (0.728014)
	rec (0.692281)
	nje (0.66368)
	tra (0.61546)
	ova (0.516529)
	hea (0.408998)
	nbm (0.397298)
	fcc (0.39557)
	nlu (0.383362)
	sug (0.381874)
	gul (0.355177)
	sin (0.349895)
	cty (0.31224)
	tbr (0.308356)
	sme (0.305437)
	lun (0.300978)
	pty (0.285429)
	lnt (0.284616)
	nmm (0.265604)
	cly (0.241284)
	cbe (0.239234)
	med (0.232504)
	aor (0.195274)
	sag (0.182715)
	ill (0.175593)
	fbs (0.175346)
	mcp (0.170648)
	cje (0.165235)
	cki (0.165235)
	isp (0.150376)
	ski (0.146735)
	spl (0.143184)
	cst (0.140036)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)