Non-Coding RNA Search

Ss1.1-Thy1-THY010066E02.5

Sequence:


               
               AGTGGAGCGAGGGTGGGGAGGAAATCGCTCCGGGAGCCGCATCCTGCTTGCGCTAGCGTC
TGCAGAGAAAAGGGTGGAGGTGCCGAAAGGAGGAAGCAGAAGAGGCTACGGAAGACAAGA
AAGTGTTGGAGCCGGTTCGGCTTTAGAGTGTGGTGAAGGGTACTTTTCATGGTGCATGGA
AGGAAAGCCAATGCGCAGGTGTACCAACATTCGACCAGGAGAGACTGGAATGGATGTAAC
AAGCCGCTGCACCCTTGGAGACCCCAACAAACTGCCAGAAGGGGTTCCCCAACCTGCCCG
CATGCCCTATATTTCGGACAAACACCCTCGACAAACCTTGGAAGTGATTAACCTTCTGAG
AAAGCACCGGGAGTTATGTGATGTGGTGCTAGTTGTGGGCGCTAAGAAGATATATGCCCA
TCGAGTCATTTTGTCAGCCTGTAGTCCCTACTTCCGAGCGATGTTTACAGGAGAATTGGC
AGAGAGCCGTCAGACAGAAGTAGTGATCCGAGACATAGATGAGAGGGCTATGGAACTACT
GATAGACTTCGCATATACCTCCCAGATAACTGTGGAAGAGGGCAATGTTCAGACCCTTCT
GCCAGCTGCTTGCCTCCTCCAACTGGCAGAAATACAGGAAGCCTGTTGTGAATTCTTAAA
GAGACAATTAGATCCTTCTAACTGCCTGGGCATTCGGGCATTTGCTGACACACATTCATG
TCGTGAGTTGCTAAGGATAGCTGACAAGTTCACTCAGCATAACTTTCAAGAGGTGATGGA
AAGTGAAGAATTCATGTTGCTTCCAGCCAATCAACTCATTGATATAATATCTAGTGATGA
ACTTAATGTTCGCAGTGAAGAACAGGTGTTCAATGCAGTGATGGCCTGGGTCAAATACAG
TATTCAAGAAAGACGTCCTCAGTTACCCCAGGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGAGCGAGGGTGGGGAGGAAATCGCTCCGGGAGCCGCATCCTGCTTGCGCTAGCGTC
TGCAGAGAAAAGGGTGGAGGTGCCGAAAGGAGGAAGCAGAAGAGGCTACGGAAGACAAGA
AAGTGTTGGAGCCGGTTCGGCTTTAGAGTGTGGTGAAGGGTACTTTTCATGGTGCATGGA
AGGAAAGCCAATGCGCAGGTGTACCAACATTCGACCAGGAGAGACTGGAATGGATGTAAC
AAGCCGCTGCACCCTTGGAGACCCCAACAAACTGCCAGAAGGGGTTCCCCAACCTGCCCG
CATGCCCTATATTTCGGACAAACACCCTCGACAAACCTTGGAAGTGATTAACCTTCTGAG
AAAGCACCGGGAGTTATGTGATGTGGTGCTAGTTGTGGGCGCTAAGAAGATATATGCCCA
TCGAGTCATTTTGTCAGCCTGTAGTCCCTACTTCCGAGCGATGTTTACAGGAGAATTGGC
AGAGAGCCGTCAGACAGAAGTAGTGATCCGAGACATAGATGAGAGGGCTATGGAACTACT
GATAGACTTCGCATATACCTCCCAGATAACTGTGGAAGAGGGCAATGTTCAGACCCTTCT
GCCAGCTGCTTGCCTCCTCCAACTGGCAGAAATACAGGAAGCCTGTTGTGAATTCTTAAA
GAGACAATTAGATCCTTCTAACTGCCTGGGCATTCGGGCATTTGCTGACACACATTCATG
TCGTGAGTTGCTAAGGATAGCTGACAAGTTCACTCAGCATAACTTTCAAGAGGTGATGGA
AAGTGAAGAATTCATGTTGCTTCCAGCCAATCAACTCATTGATATAATATCTAGTGATGA
ACTTAATGTTCGCAGTGAAGAACAGGTGTTCAATGCAGTGATGGCCTGGGTCAAATACAG
TATTCAAGAAAGACGTCCTCAGTTACCCCAGGTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50793261|ref|XP_423629.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50793261|ref|XP_423629.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               514-713, - strand, RNAz p=0.936402

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               514-713, - strand, RNAz p=0.936402

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-136, gnl|bosTau2|chr16 (41854978-41854837)
               

               
               1-136, gnl|canFam2|chr7 (28450334-28449890)
               

               
               1-136, gnl|echTel1|scaffold_262371 (3640-3228)
               

               
               1-136, gnl|hg17|chr1 (170415630-170416071)
               

               
               1-136, gnl|Hg17|chr1 (170415735-170415876)
               

               
               1-136, gnl|mm7|chr1 (161093970-161093534)
               

               
               1-136, gnl|Mm7|chr1 (161093863-161093731)
               

               
               1-136, gnl|oryCun1|scaffold_184073 (13311-12861)
               

               
               1-136, gnl|panTro1|chr1 (152786602-152787030)
               

               
               1-136, gnl|rheMac2|chr1 (203356975-203357425)
               

               
               1-136, gnl|rn3|chr13 (76714953-76714507)
               


               
               195-776, gnl|bosTau2|chr16 (41845004-41845585)
               

               
               195-776, gnl|Hg17|chr1 (170434505-170435086)
               

               
               195-776, gnl|Mm7|chr1 (161072169-161071588)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-136, gnl|bosTau2|chr16 (41854978-41854837)
               

               
               1-136, gnl|canFam2|chr7 (28450334-28449890)
               

               
               1-136, gnl|echTel1|scaffold_262371 (3640-3228)
               

               
               1-136, gnl|hg17|chr1 (170415630-170416071)
               

               
               1-136, gnl|Hg17|chr1 (170415735-170415876)
               

               
               1-136, gnl|mm7|chr1 (161093970-161093534)
               

               
               1-136, gnl|Mm7|chr1 (161093863-161093731)
               

               
               1-136, gnl|oryCun1|scaffold_184073 (13311-12861)
               

               
               1-136, gnl|panTro1|chr1 (152786602-152787030)
               

               
               1-136, gnl|rheMac2|chr1 (203356975-203357425)
               

               
               1-136, gnl|rn3|chr13 (76714953-76714507)
               


               
               195-776, gnl|bosTau2|chr16 (41845004-41845585)
               

               
               195-776, gnl|Hg17|chr1 (170434505-170435086)
               

               
               195-776, gnl|Mm7|chr1 (161072169-161071588)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               ebs (0.118301)

	1-136, gnl\|bosTau2\|chr16 (41854978-41854837)
	1-136, gnl\|canFam2\|chr7 (28450334-28449890)
	1-136, gnl\|echTel1\|scaffold_262371 (3640-3228)
	1-136, gnl\|hg17\|chr1 (170415630-170416071)
	1-136, gnl\|Hg17\|chr1 (170415735-170415876)
	1-136, gnl\|mm7\|chr1 (161093970-161093534)
	1-136, gnl\|Mm7\|chr1 (161093863-161093731)
	1-136, gnl\|oryCun1\|scaffold_184073 (13311-12861)
	1-136, gnl\|panTro1\|chr1 (152786602-152787030)
	1-136, gnl\|rheMac2\|chr1 (203356975-203357425)
	1-136, gnl\|rn3\|chr13 (76714953-76714507)

	195-776, gnl\|bosTau2\|chr16 (41845004-41845585)
	195-776, gnl\|Hg17\|chr1 (170434505-170435086)
	195-776, gnl\|Mm7\|chr1 (161072169-161071588)