Non-Coding RNA Search

Ss1.1-Thy1-THY010066G01.5.46

Sequence:


               
               ATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCCCTCAAGCCATCCTCATTCTGCTGTC
GGGGGCCCTGGCCCTGACCGGGACTCAGGCGGGTCCCCACTCCCTGAGCTATTTCTACAC
CGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCTTCATTGTCGGCTACGTGGACGA
CACGCAGTTCGTGCGGTTCGACAGCGACGCCCCAAATGCAAAGATGGAGCCGCGGGCGCA
GTGGATACAGCAGGAGGGGCAGGAGTATTGGGATCGGGAGACACAGATCAGCAAGGAAAC
CGCACAGAATTACCGAGTGGACCTGAACACCCTGCGCGGCTACTACAACCAGAGCGAGGC
CGGGTCTCACACCATCCAGAGAATGTACGGCTGCTACTTGGGACCAGACGGGCTCCTCCT
CCGCGGGTACAGTCAGTATGGCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCT
GCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGC
CGATGCGGCGGAGCAGGAGAGGAGCTACCTGCAGGGCACGTGTGTGGAGTGGCTCCAGAA
ATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGAC
CCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCC
TAAGGAGATCTCCCTGAGCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACATGGAGCT
GGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCC
TCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCCCTCAAGCCATCCTCATTCTGCTGTC
GGGGGCCCTGGCCCTGACCGGGACTCAGGCGGGTCCCCACTCCCTGAGCTATTTCTACAC
CGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCTTCATTGTCGGCTACGTGGACGA
CACGCAGTTCGTGCGGTTCGACAGCGACGCCCCAAATGCAAAGATGGAGCCGCGGGCGCA
GTGGATACAGCAGGAGGGGCAGGAGTATTGGGATCGGGAGACACAGATCAGCAAGGAAAC
CGCACAGAATTACCGAGTGGACCTGAACACCCTGCGCGGCTACTACAACCAGAGCGAGGC
CGGGTCTCACACCATCCAGAGAATGTACGGCTGCTACTTGGGACCAGACGGGCTCCTCCT
CCGCGGGTACAGTCAGTATGGCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCT
GCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGC
CGATGCGGCGGAGCAGGAGAGGAGCTACCTGCAGGGCACGTGTGTGGAGTGGCTCCAGAA
ATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGAC
CCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACCC
TAAGGAGATCTCCCTGAGCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACATGGAGCT
GGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCC
TCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q68VF2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68VF2_PIG

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               96-363, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               96-363, gnl|Hg17|chr6 (30335574-30335841)
               

               
               96-363, gnl|Mm7|chr17 (33571220-33571487)
               


               
               396-646, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               396-646, gnl|Hg17|chr6 (31347071-31346829)
               

               
               396-646, gnl|Mm7|chr17 (32077846-32077606)
               


               
               688-880, gnl|bosTau2|chr7 (27038140-27037948)
               

               
               688-880, gnl|Hg17|chr6 (31346192-31346000)
               

               
               688-880, gnl|Mm7|chr13 (23071892-23071697)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-363, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               96-363, gnl|Hg17|chr6 (30335574-30335841)
               

               
               96-363, gnl|Mm7|chr17 (33571220-33571487)
               


               
               396-646, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               396-646, gnl|Hg17|chr6 (31347071-31346829)
               

               
               396-646, gnl|Mm7|chr17 (32077846-32077606)
               


               
               688-880, gnl|bosTau2|chr7 (27038140-27037948)
               

               
               688-880, gnl|Hg17|chr6 (31346192-31346000)
               

               
               688-880, gnl|Mm7|chr13 (23071892-23071697)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.766724)
               

               
               nje (0.16592)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.766724)
               

               
               nje (0.16592)

	96-363, gnl\|bosTau2\|chr23 (21180741-21180474)
	96-363, gnl\|Hg17\|chr6 (30335574-30335841)
	96-363, gnl\|Mm7\|chr17 (33571220-33571487)

	396-646, gnl\|bosTau2\|chr20 (36655627-36655873)
	396-646, gnl\|Hg17\|chr6 (31347071-31346829)
	396-646, gnl\|Mm7\|chr17 (32077846-32077606)

	688-880, gnl\|bosTau2\|chr7 (27038140-27037948)
	688-880, gnl\|Hg17\|chr6 (31346192-31346000)
	688-880, gnl\|Mm7\|chr13 (23071892-23071697)