Ss1.1-Thy1-THY010068C12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTCTTGTGTTTGAGCCTCTGAGTATGAATTTACGAGAGGTGTTAAAAAAATATGGTAA GGATGTCGGCCTTCATATTAAGGCCGTACGATCCTATAGTCAGCAGTTGTTCTTGGCACT GAAACTCCTTAAAAGATGCAATATCCTCCACGCAGATATCAAGCCAGACAATATCTTGGT TAATGAATCGAAAACTATCTTGAAGCTCTGCGATTTTGGCTCGGCTTCCCACGTCGCGGA CAACGACATCACGCCTTATCTCGTCAGTAGATTTTATCGAGCTCCTGAAATCATTATAGG TAAAAGCTATGACTACGGTATAGACATGTGGTCCGTAGGTTGTACCCTGTATGAACTCTA TACTGGGAAAATCCTATTTCCTGGCAAAACCAATAACCATATGTTGAAGCTCGCCATGGA TCTCAAGGGAAAGATGCCGAATAAGATGATTCGGAAAGGTGTATTTAAAGACCAACATTT TGATCAGAACCTCAACTTTATGTACATAGAAGTTGATAAAGTAACAGAGAGGGAGAAGGT TACTGTCATGAGCACCATTAACCCAACTAAAGACCTGTTGGCCGACCTGATTGGCTGCCA GCGCCTTCCCGAGGACCAGCGTAAAAAAGTGCACCAGCTCAAGGACTTGTTGGACCAGAT CCTAATGTTGGACCCTGCTAAGCGGATTAGCATCAACCAGGCCCTGCAGCATGCCTTCAT CCAGGAGAAGATTTAAACCAGAGAAGAAGCTCCAAGGGGTTGAGTAATTAAGTACAAAGA CTGACGAGATTTCACAGCAGTTTATTAATGTATATAAACTTATAAATATTTCTCCAGCAA ATTTGAGAACGCATGATATATTTGAATTAACACCAAGGGTGATATTTCTTTTAGAAGTGT TAGTTGATCTGTTTTGTGTCGGATGTGAAATTCCACTGTAGAACTGTTGTAGTTGCCAAG GCTGCCCAGAGCTTCAGTGCGAATGTCAAGGGTTGCAGTTCACAGCAGAGACGGAAGCAT CGGTTACAAACGAGGGCTAGTGCTGGGTGGTTGATTTATTTTAGCAAACTTGGCTTCATT GTGGTCTTCGGAGAAAAAGGCCGGCATAAATGCTGTTTATATTCACGTTTCCCTAGGTGT GTGTGTGCAGGCCACAGCGGCATGCCCTGGGTGTAGTCAGTGCCGAAAGGGGCCTGTTCC TTCTTGAGCCTGCCTGCAGGGACGGTCTCCTCTTTTAAAGCAGGTTGCGTACAGCATTCA GTACACTGAAGGTAAGCTGAACCATCCGCCTCCCGGTGTCTGCAGATGTTAGTTTATTGG AACAATTGACAAAGGAGGGATGTTCTTAGCTTTGTGGCGGATTCCCTGCATGTGTGATAA CTGATCTTGTTTCTTTTCTGGCATCGCACCTGTGGCATAGTTACAATTTCTGTTCTGTTC ATCACATTTAAAATTTGAAGAGTATGCGCTTGATGGATGGAGCGCCTTCAGTGTACTGTT TCTTATTACCTTTAATTTTTCTAGATCAACTTGCTATAGACTTTATATACATTTTGTTAA ACACAGCTCCTAGTGACCTGGAAACGGGCGTACTTTCATTTACTGATAACAAATGTTGAG GCCTGATTCTGGAAGTCCTCATATTTAAAGTTAGATAGGCCACGTAATGAATTTTAACTA TTTGTATGTCGTTTTGAAAGTGTACTGCTTTGTGGTAAAAGCGTTTCCGTTTGTTCATTT TCACTACTTGTGATCATGTTGTCTTTCAATACAGGCGTAAACCTCCCACTCTTGAACAAA GCAGCTGCTTTTTAAAAGCGGTAATTGCTTCTTTACCTTCTCCTTCTTTTGTAAATGAAA CTGTCCTTTAAGAATGTGACTTGAAAGTGTCGTCCGTTTGCCTAAAACAGTTGGCACGCG CTCACTGTAAAGTGGAGATGGTTCTACTGCATGTGACGTGCACCATGCAGGTTTCTGTGT GTTCTCAGTCCGCATCACTAGAGAATAAAGGCTTTTGTGAACAAGGCATTTGTAGCCATT TCTAAAAGTGTTGTCTTCAGTGCTGGCGAGTCAGGTAACCGTACCTGTAGTGCGAAGCGA CCTCTCGCTGCTTCCCTTGAGCCTGACGGAAGGAACTGTCCCTTAAAGACGTAGTAGCTT CGCCCCGGGCTCAGCGCCTCAGGGCAGGTTGGGATCCCGACTCTGCCCTCAAAGAATCCT CCCGAGATAGCGGCAGCTCGCAGTGTAGTGAGGTAACGCCTGTAGGTTGCGGGGTGCGAC TCAGGGTGTAACTAATGTTTCTGCTATTTTCTCACTCTTCCTCCTGATGGTGCGGAAAGA GGAGAAGGAGAACGGGGCACAGGCCACTCACCGCCTCTCCAGGGTCTGATTTGCTGAGAC ACCAGCTTCACCTTCCTAACAAGGTGCAGCTCAGTGGAAGATGATGCCACCAGAAGACAT GAGCTAAGGTTTCTGTCCCATAAAAGATTAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAG ACCAGAAGACATGAGCTAAGGTTTCTGTCCCATAAAAGATTAAAAAAAAAAAAAAAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTCTTGTGTTTGAGCCTCTGAGTATGAATTTACGAGAGGTGTTAAAAAAATATGGTAA GGATGTCGGCCTTCATATTAAGGCCGTACGATCCTATAGTCAGCAGTTGTTCTTGGCACT GAAACTCCTTAAAAGATGCAATATCCTCCACGCAGATATCAAGCCAGACAATATCTTGGT TAATGAATCGAAAACTATCTTGAAGCTCTGCGATTTTGGCTCGGCTTCCCACGTCGCGGA CAACGACATCACGCCTTATCTCGTCAGTAGATTTTATCGAGCTCCTGAAATCATTATAGG TAAAAGCTATGACTACGGTATAGACATGTGGTCCGTAGGTTGTACCCTGTATGAACTCTA TACTGGGAAAATCCTATTTCCTGGCAAAACCAATAACCATATGTTGAAGCTCGCCATGGA TCTCAAGGGAAAGATGCCGAATAAGATGATTCGGAAAGGTGTATTTAAAGACCAACATTT TGATCAGAACCTCAACTTTATGTACATAGAAGTTGATAAAGTAACAGAGAGGGAGAAGGT TACTGTCATGAGCACCATTAACCCAACTAAAGACCTGTTGGCCGACCTGATTGGCTGCCA GCGCCTTCCCGAGGACCAGCGTAAAAAAGTGCACCAGCTCAAGGACTTGTTGGACCAGAT CCTAATGTTGGACCCTGCTAAGCGGATTAGCATCAACCAGGCCCTGCAGCATGCCTTCAT CCAGGAGAAGATTTAAACCAGAGAAGAAGCTCCAAGGGGTTGAGTAATTAAGTACAAAGA CTGACGAGATTTCACAGCAGTTTATTAATGTATATAAACTTATAAATATTTCTCCAGCAA ATTTGAGAACGCATGATATATTTGAATTAACACCAAGGGTGATATTTCTTTTAGAAGTGT TAGTTGATCTGTTTTGTGTCGGATGTGAAATTCCACTGTAGAACTGTTGTAGTTGCCAAG GCTGCCCAGAGCTTCAGTGCGAATGTCAAGGGTTGCAGTTCACAGCAGAGACGGAAGCAT CGGTTACAAACGAGGGCTAGTGCTGGGTGGTTGATTTATTTTAGCAAACTTGGCTTCATT GTGGTCTTCGGAGAAAAAGGCCGGCATAAATGCTGTTTATATTCACGTTTCCCTAGGTGT GTGTGTGCAGGCCACAGCGGCATGCCCTGGGTGTAGTCAGTGCCGAAAGGGGCCTGTTCC TTCTTGAGCCTGCCTGCAGGGACGGTCTCCTCTTTTAAAGCAGGTTGCGTACAGCATTCA GTACACTGAAGGTAAGCTGAACCATCCGCCTCCCGGTGTCTGCAGATGTTAGTTTATTGG AACAATTGACAAAGGAGGGATGTTCTTAGCTTTGTGGCGGATTCCCTGCATGTGTGATAA CTGATCTTGTTTCTTTTCTGGCATCGCACCTGTGGCATAGTTACAATTTCTGTTCTGTTC ATCACATTTAAAATTTGAAGAGTATGCGCTTGATGGATGGAGCGCCTTCAGTGTACTGTT TCTTATTACCTTTAATTTTTCTAGATCAACTTGCTATAGACTTTATATACATTTTGTTAA ACACAGCTCCTAGTGACCTGGAAACGGGCGTACTTTCATTTACTGATAACAAATGTTGAG GCCTGATTCTGGAAGTCCTCATATTTAAAGTTAGATAGGCCACGTAATGAATTTTAACTA TTTGTATGTCGTTTTGAAAGTGTACTGCTTTGTGGTAAAAGCGTTTCCGTTTGTTCATTT TCACTACTTGTGATCATGTTGTCTTTCAATACAGGCGTAAACCTCCCACTCTTGAACAAA GCAGCTGCTTTTTAAAAGCGGTAATTGCTTCTTTACCTTCTCCTTCTTTTGTAAATGAAA CTGTCCTTTAAGAATGTGACTTGAAAGTGTCGTCCGTTTGCCTAAAACAGTTGGCACGCG CTCACTGTAAAGTGGAGATGGTTCTACTGCATGTGACGTGCACCATGCAGGTTTCTGTGT GTTCTCAGTCCGCATCACTAGAGAATAAAGGCTTTTGTGAACAAGGCATTTGTAGCCATT TCTAAAAGTGTTGTCTTCAGTGCTGGCGAGTCAGGTAACCGTACCTGTAGTGCGAAGCGA CCTCTCGCTGCTTCCCTTGAGCCTGACGGAAGGAACTGTCCCTTAAAGACGTAGTAGCTT CGCCCCGGGCTCAGCGCCTCAGGGCAGGTTGGGATCCCGACTCTGCCCTCAAAGAATCCT CCCGAGATAGCGGCAGCTCGCAGTGTAGTGAGGTAACGCCTGTAGGTTGCGGGGTGCGAC TCAGGGTGTAACTAATGTTTCTGCTATTTTCTCACTCTTCCTCCTGATGGTGCGGAAAGA GGAGAAGGAGAACGGGGCACAGGCCACTCACCGCCTCTCCAGGGTCTGATTTGCTGAGAC ACCAGCTTCACCTTCCTAACAAGGTGCAGCTCAGTGGAAGATGATGCCACCAGAAGACAT GAGCTAAGGTTTCTGTCCCATAAAAGATTAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAG ACCAGAAGACATGAGCTAAGGTTTCTGTCCCATAAAAGATTAAAAAAAAAAAAAAAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 651-846, - strand, RNAz p=0.806315 | |
| 1205-1323, - strand, RNAz p=0.687677 | |
| 1716-1869, + strand, RNAz p=0.93824 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 651-846, - strand, RNAz p=0.806315 | |
| 1205-1323, - strand, RNAz p=0.687677 | |
| 1716-1869, + strand, RNAz p=0.93824 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC009844, + |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 2-180, gnl|bosTau2|chr23 (40302547-40302369) | |
| 2-180, gnl|canFam2|chr35 (7308444-7308606) | |
| 2-180, gnl|danRer3|chr2 (25981924-25982094) | |
| 2-180, gnl|dasNov1|scaffold_5351 (7237-7075) | |
| 2-180, gnl|echTel1|scaffold_320409 (37759-37597) | |
| 2-180, gnl|fr1|chrUn (229452625-229452801) | |
| 2-180, gnl|galGal2|chr2 (65705185-65705023) | |
| 2-180, gnl|Hg17|chr6 (3997923-3998108) | |
| 2-180, gnl|hg17|chr9 (114689719-114689881) | |
| 2-180, gnl|loxAfr1|scaffold_13396 (14541-14699) | |
| 2-180, gnl|mm7|chr13 (34311179-34311341) | |
| 2-180, gnl|Mm7|chr13 (34311157-34311335) | |
| 2-180, gnl|monDom2|scaffold_3 (87231474-87231636) | |
| 2-180, gnl|panTro1|chr11 (99234088-99234250) | |
| 2-180, gnl|rheMac2|chr15 (21254787-21254626) | |
| 2-180, gnl|rn3|chr17 (36330063-36329901) | |
| 2-180, gnl|tetNig1|chr6 (5138373-5138195) | |
| 2-180, gnl|xenTro1|scaffold_472 (486504-486342) | |
| 294-445, gnl|bosTau2|chr23 (40299193-40299042) | |
| 294-445, gnl|canFam2|chr35 (7311799-7311992) | |
| 294-445, gnl|canFam2|chr35 (7311810-7311959) | |
| 294-445, gnl|danRer3|chr2 (25982607-25982791) | |
| 294-445, gnl|danRer3|chr2 (25982640-25982784) | |
| 294-445, gnl|dasNov1|scaffold_5351 (4101-3919) | |
| 294-445, gnl|dasNov1|scaffold_5351 (4090-3941) | |
| 294-445, gnl|echTel1|scaffold_320409 (33691-33496) | |
| 294-445, gnl|echTel1|scaffold_320409 (33680-33531) | |
| 294-445, gnl|fr1|chrUn (229453044-229453216) | |
| 294-445, gnl|fr1|chrUn (229453053-229453197) | |
| 294-445, gnl|galGal2|chr2 (65702699-65702526) | |
| 294-445, gnl|galGal2|chr2 (65702693-65702544) | |
| 294-445, gnl|hg17|chr6 (4002259-4002441) | |
| 294-445, gnl|Hg17|chr6 (4002269-4002420) | |
| 294-445, gnl|hg17|chr9 (114689989-114690134) | |
| 294-445, gnl|loxAfr1|scaffold_132008 (619-437) | |
| 294-445, gnl|loxAfr1|scaffold_13396 (14809-14959) | |
| 294-445, gnl|mm7|chr13 (34315034-34315207) | |
| 294-445, gnl|mm7|chr13 (34315045-34315194) | |
| 294-445, gnl|Mm7|chr13 (34315044-34315195) | |
| 294-445, gnl|monDom2|scaffold_3 (87235810-87235986) | |
| 294-445, gnl|monDom2|scaffold_3 (87235821-87235970) | |
| 294-445, gnl|oryCun1|scaffold_198792 (31882-31700) | |
| 294-445, gnl|oryCun1|scaffold_198792 (31871-31722) | |
| 294-445, gnl|panTro1|chr11 (99234358-99234503) | |
| 294-445, gnl|panTro1|chr5 (4210627-4210809) | |
| 294-445, gnl|rheMac2|chr15 (21254519-21254370) | |
| 294-445, gnl|rheMac2|chr4 (3920526-3920708) | |
| 294-445, gnl|rn3|chr17 (36325685-36325513) | |
| 294-445, gnl|rn3|chr17 (36325675-36325526) | |
| 294-445, gnl|tetNig1|chr6 (5137961-5137803) | |
| 294-445, gnl|tetNig1|chr6 (5137953-5137809) | |
| 294-445, gnl|xenTro1|scaffold_472 (482557-482383) | |
| 294-445, gnl|xenTro1|scaffold_472 (482543-482397) | |
| 532-2425, gnl|bosTau2|chr23 (40297246-40295356) | |
| 532-2425, gnl|Hg17|chr6 (4005645-4007534) | |
| 532-2425, gnl|Mm7|chr13 (34316605-34318488) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-180, gnl|bosTau2|chr23 (40302547-40302369) | |
| 2-180, gnl|canFam2|chr35 (7308444-7308606) | |
| 2-180, gnl|danRer3|chr2 (25981924-25982094) | |
| 2-180, gnl|dasNov1|scaffold_5351 (7237-7075) | |
| 2-180, gnl|echTel1|scaffold_320409 (37759-37597) | |
| 2-180, gnl|fr1|chrUn (229452625-229452801) | |
| 2-180, gnl|galGal2|chr2 (65705185-65705023) | |
| 2-180, gnl|Hg17|chr6 (3997923-3998108) | |
| 2-180, gnl|hg17|chr9 (114689719-114689881) | |
| 2-180, gnl|loxAfr1|scaffold_13396 (14541-14699) | |
| 2-180, gnl|mm7|chr13 (34311179-34311341) | |
| 2-180, gnl|Mm7|chr13 (34311157-34311335) | |
| 2-180, gnl|monDom2|scaffold_3 (87231474-87231636) | |
| 2-180, gnl|panTro1|chr11 (99234088-99234250) | |
| 2-180, gnl|rheMac2|chr15 (21254787-21254626) | |
| 2-180, gnl|rn3|chr17 (36330063-36329901) | |
| 2-180, gnl|tetNig1|chr6 (5138373-5138195) | |
| 2-180, gnl|xenTro1|scaffold_472 (486504-486342) | |
| 294-445, gnl|bosTau2|chr23 (40299193-40299042) | |
| 294-445, gnl|canFam2|chr35 (7311799-7311992) | |
| 294-445, gnl|canFam2|chr35 (7311810-7311959) | |
| 294-445, gnl|danRer3|chr2 (25982607-25982791) | |
| 294-445, gnl|danRer3|chr2 (25982640-25982784) | |
| 294-445, gnl|dasNov1|scaffold_5351 (4101-3919) | |
| 294-445, gnl|dasNov1|scaffold_5351 (4090-3941) | |
| 294-445, gnl|echTel1|scaffold_320409 (33691-33496) | |
| 294-445, gnl|echTel1|scaffold_320409 (33680-33531) | |
| 294-445, gnl|fr1|chrUn (229453044-229453216) | |
| 294-445, gnl|fr1|chrUn (229453053-229453197) | |
| 294-445, gnl|galGal2|chr2 (65702699-65702526) | |
| 294-445, gnl|galGal2|chr2 (65702693-65702544) | |
| 294-445, gnl|hg17|chr6 (4002259-4002441) | |
| 294-445, gnl|Hg17|chr6 (4002269-4002420) | |
| 294-445, gnl|hg17|chr9 (114689989-114690134) | |
| 294-445, gnl|loxAfr1|scaffold_132008 (619-437) | |
| 294-445, gnl|loxAfr1|scaffold_13396 (14809-14959) | |
| 294-445, gnl|mm7|chr13 (34315034-34315207) | |
| 294-445, gnl|mm7|chr13 (34315045-34315194) | |
| 294-445, gnl|Mm7|chr13 (34315044-34315195) | |
| 294-445, gnl|monDom2|scaffold_3 (87235810-87235986) | |
| 294-445, gnl|monDom2|scaffold_3 (87235821-87235970) | |
| 294-445, gnl|oryCun1|scaffold_198792 (31882-31700) | |
| 294-445, gnl|oryCun1|scaffold_198792 (31871-31722) | |
| 294-445, gnl|panTro1|chr11 (99234358-99234503) | |
| 294-445, gnl|panTro1|chr5 (4210627-4210809) | |
| 294-445, gnl|rheMac2|chr15 (21254519-21254370) | |
| 294-445, gnl|rheMac2|chr4 (3920526-3920708) | |
| 294-445, gnl|rn3|chr17 (36325685-36325513) | |
| 294-445, gnl|rn3|chr17 (36325675-36325526) | |
| 294-445, gnl|tetNig1|chr6 (5137961-5137803) | |
| 294-445, gnl|tetNig1|chr6 (5137953-5137809) | |
| 294-445, gnl|xenTro1|scaffold_472 (482557-482383) | |
| 294-445, gnl|xenTro1|scaffold_472 (482543-482397) | |
| 532-2425, gnl|bosTau2|chr23 (40297246-40295356) | |
| 532-2425, gnl|Hg17|chr6 (4005645-4007534) | |
| 532-2425, gnl|Mm7|chr13 (34316605-34318488) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| nbm (0.297974) | |
| liv (0.292569) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| col (0.195008) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cki (0.165235) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.297974) | |
| liv (0.292569) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| col (0.195008) | |
| ill (0.175593) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cki (0.165235) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ret (0.128733) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| cty (0.10408) |