Ss1.1-Thy1-THY010068G12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTCCAGAGGGGCGGAGGCCCAGAGGTGGACCACGTGGGGGCTGGTGGAGCTGAATCTC CGGCGGGCGTCCAGTTTAGGTCGAAGTTGGAGTTGGAACCGTGGAGATGCGGAAGGAGAC CCCTCCCTCCCTAGTGCCCCCGGCGGCCCGGGAGTGGAACCTTCCCCCCAATGCGCCCGC GTGTATGGAGCGTCAGTTGGAGGCTGCGCGGTACCGGTCAGATGGGGCGCTTCTGCTCGG GGCTTCCAGCCTGAGTGGCCGCTGCTGGGCTGGCTCCCTCTGGCTTTTCAAGGACCCTTG CGCCGCCCCCAACGAAGGCTTCTGCTCCGCTGGAGTCCAAACGGAGGCTGGAGTGGCTGA CCTCACTTGGGTAGGGGACAGAGGTATCCTGGTGGCTTCTGATTCAGGTGCTGTTGAATT GTGGGAGCTGGATGAGAATGAGACACTCATTGTCAGCAAGTTCTGCAAGTATGAGCACGA TGACATCGTGTCTTCAGTCAGTGTCCTGAGCTCTGGCACACAAGCTGTCAGTGGTAGCAA AGACTTCTGCATCAAGGTTTGGGACCTTGCTCAGCAGATGGTTCTGAATTCATACCGAGC TCACTCTGGGCAGGTCACCTGTGTTGCTGCCTCTCCCCACAAAGACTCCGTGTTTCTCTC CTGCAGTGAGGACAATAGAATTTTACTTTGGGATACTCGCTGTCCCAAGCCAGCGTCACA GATAGGCTACAGGGCCTCTGGCTACCTGCCTACCTCGCTGGCTTGGCATCCTCAGCGGAG TGAAGTCTTTGTCTTTGGCGATGAGAATGGGACCGTCTCCCTTGTGGACACCAAGAGTGC AAGCTGTGCCCTCAGCGCAACTGTGCACTCCCAGAGTGTCACCGGGCTGGTGTTCTCTCC ACACAGCACTCCCTTCCTGGCTTCTGTGAGTGAAGACTGCTCCCTCGCCGTGCTGGACTC GGGCCTCTCCGAGGTGTTTAGAAGCCGAGCCCACAGAGACTTTGTGAGAGATGCTACCTG GTCCCCGCTCAATCACTCCCTTCTTACGACAGTGGGCTGGGACCATCAGGTCATCCACCA CATCTTGCCCACAGAACCTTTCCCAGAGCCTGGACTTAAGAGTGCTGCCGAGTAGATTGG ATTTAAGACAAGCAAATCCCCCATGAGTATCTGCTCCCTCTGCCCCTGCCCACTCAGTTT GTGAGACAACACAGGAGCCTTATATAGTGTGTTGACACACCAGATCTGTTAATAGGCATT GTCTCTCAGCCTGGGGGAGGCTGGATCTGGGGTCCTGTAGTCACAGAGAAGAAAAACTTC CTTGAAGATGGACGTGTGTGTATGTGTCTGAGTGTATGTGTAGATAACATAATTTTTTTA GCAGAGATGAATAAAAAAAAATGCATCCCGCATCTTCCCCAAGATCTAACCCCCCTCCCC CCACAAAAAGTTGGCAGAAGGTTTTTATGCCTCCCATGTAGCTGTGCTTGAGGAATTGAC TGTGTCTTGGTAAGGTCTGGGCTGTGGGCATTGCTGGATTCTTGGAAGCAGCTCGTGACT CGTCATAGAGATAGGAGCACCTTTATTTTTTTAATAGAGCTTGATTCACCTTTGTCATGG GCAGTGCTTCCATTCACAGAAGTCCGGCCCAGCTCGCCTTGAGGAAGAGCCAGGACACTT AACATGGTTTTGCACATCTCTTTGCCATTAGACTGAGCCGAAGTCCAGTTGCTGGCTGAG TAAGAAGTGTGTGATGCCCACCCCCCGTGAAGTTGTGTATATGAGAGATGAGTGTATTTC TGTCATAGATGCCATGGGAAAAAGTTTCAGGAAGGTGGAGAGCTTAAAGGCACTTCAGTT AAAAACTGACACAGACTTTCATAGGAATGTCTGCCACTTTCCCACCTGAAAACAGCCTGG GGCCTGACCTTTTTTGCCTCTGGGCCCCTGCCTCTGGATCTAGGAAGCCTGAATGTTATT TTGGGGAACTCTGAAGATTTTAAATGCAGCAAGAGAGAGAGAATCGGAAATACTGGTCAG TGAAATAAAAAGTTGATTCATTGTAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTCCAGAGGGGCGGAGGCCCAGAGGTGGACCACGTGGGGGCTGGTGGAGCTGAATCTC CGGCGGGCGTCCAGTTTAGGTCGAAGTTGGAGTTGGAACCGTGGAGATGCGGAAGGAGAC CCCTCCCTCCCTAGTGCCCCCGGCGGCCCGGGAGTGGAACCTTCCCCCCAATGCGCCCGC GTGTATGGAGCGTCAGTTGGAGGCTGCGCGGTACCGGTCAGATGGGGCGCTTCTGCTCGG GGCTTCCAGCCTGAGTGGCCGCTGCTGGGCTGGCTCCCTCTGGCTTTTCAAGGACCCTTG CGCCGCCCCCAACGAAGGCTTCTGCTCCGCTGGAGTCCAAACGGAGGCTGGAGTGGCTGA CCTCACTTGGGTAGGGGACAGAGGTATCCTGGTGGCTTCTGATTCAGGTGCTGTTGAATT GTGGGAGCTGGATGAGAATGAGACACTCATTGTCAGCAAGTTCTGCAAGTATGAGCACGA TGACATCGTGTCTTCAGTCAGTGTCCTGAGCTCTGGCACACAAGCTGTCAGTGGTAGCAA AGACTTCTGCATCAAGGTTTGGGACCTTGCTCAGCAGATGGTTCTGAATTCATACCGAGC TCACTCTGGGCAGGTCACCTGTGTTGCTGCCTCTCCCCACAAAGACTCCGTGTTTCTCTC CTGCAGTGAGGACAATAGAATTTTACTTTGGGATACTCGCTGTCCCAAGCCAGCGTCACA GATAGGCTACAGGGCCTCTGGCTACCTGCCTACCTCGCTGGCTTGGCATCCTCAGCGGAG TGAAGTCTTTGTCTTTGGCGATGAGAATGGGACCGTCTCCCTTGTGGACACCAAGAGTGC AAGCTGTGCCCTCAGCGCAACTGTGCACTCCCAGAGTGTCACCGGGCTGGTGTTCTCTCC ACACAGCACTCCCTTCCTGGCTTCTGTGAGTGAAGACTGCTCCCTCGCCGTGCTGGACTC GGGCCTCTCCGAGGTGTTTAGAAGCCGAGCCCACAGAGACTTTGTGAGAGATGCTACCTG GTCCCCGCTCAATCACTCCCTTCTTACGACAGTGGGCTGGGACCATCAGGTCATCCACCA CATCTTGCCCACAGAACCTTTCCCAGAGCCTGGACTTAAGAGTGCTGCCGAGTAGATTGG ATTTAAGACAAGCAAATCCCCCATGAGTATCTGCTCCCTCTGCCCCTGCCCACTCAGTTT GTGAGACAACACAGGAGCCTTATATAGTGTGTTGACACACCAGATCTGTTAATAGGCATT GTCTCTCAGCCTGGGGGAGGCTGGATCTGGGGTCCTGTAGTCACAGAGAAGAAAAACTTC CTTGAAGATGGACGTGTGTGTATGTGTCTGAGTGTATGTGTAGATAACATAATTTTTTTA GCAGAGATGAATAAAAAAAAATGCATCCCGCATCTTCCCCAAGATCTAACCCCCCTCCCC CCACAAAAAGTTGGCAGAAGGTTTTTATGCCTCCCATGTAGCTGTGCTTGAGGAATTGAC TGTGTCTTGGTAAGGTCTGGGCTGTGGGCATTGCTGGATTCTTGGAAGCAGCTCGTGACT CGTCATAGAGATAGGAGCACCTTTATTTTTTTAATAGAGCTTGATTCACCTTTGTCATGG GCAGTGCTTCCATTCACAGAAGTCCGGCCCAGCTCGCCTTGAGGAAGAGCCAGGACACTT AACATGGTTTTGCACATCTCTTTGCCATTAGACTGAGCCGAAGTCCAGTTGCTGGCTGAG TAAGAAGTGTGTGATGCCCACCCCCCGTGAAGTTGTGTATATGAGAGATGAGTGTATTTC TGTCATAGATGCCATGGGAAAAAGTTTCAGGAAGGTGGAGAGCTTAAAGGCACTTCAGTT AAAAACTGACACAGACTTTCATAGGAATGTCTGCCACTTTCCCACCTGAAAACAGCCTGG GGCCTGACCTTTTTTGCCTCTGGGCCCCTGCCTCTGGATCTAGGAAGCCTGAATGTTATT TTGGGGAACTCTGAAGATTTTAAATGCAGCAAGAGAGAGAGAATCGGAAATACTGGTCAG TGAAATAAAAAGTTGATTCATTGTAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 676-915, - strand, RNAz p=0.966407 | |
| 806-1386, - strand, RNAz p=0.970271 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 676-915, - strand, RNAz p=0.966407 | |
| 806-1386, - strand, RNAz p=0.970271 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 3-224, gnl|bosTau2|chr3 (27769520-27769740) | |
| 3-224, gnl|canFam2|chr6 (43686681-43686822) | |
| 3-224, gnl|dasNov1|scaffold_4801 (14870-14727) | |
| 3-224, gnl|Hg17|chr1 (111703940-111703716) | |
| 3-224, gnl|hg17|chr4 (155802255-155802376) | |
| 3-224, gnl|loxAfr1|scaffold_6961 (45648-45503) | |
| 3-224, gnl|mm7|chr13 (72941962-72941810) | |
| 3-224, gnl|Mm7|chr3 (105777767-105777989) | |
| 3-224, gnl|monDom2|scaffold_0 (4376632-4376788) | |
| 3-224, gnl|oryCun1|scaffold_174962 (99958-100100) | |
| 3-224, gnl|panTro1|chr3 (173165901-173166022) | |
| 3-224, gnl|rheMac2|chr5 (146725421-146725542) | |
| 3-224, gnl|rn3|chr2 (201169633-201169781) | |
| 337-560, gnl|bosTau2|chr25 (16854169-16853944) | |
| 337-560, gnl|Hg17|chr4 (155802785-155802994) | |
| 337-560, gnl|Mm7|chr13 (72941700-72941459) | |
| 581-1398, gnl|bosTau2|chr25 (16853947-16853179) | |
| 581-1398, gnl|Hg17|chr4 (155802991-155803809) | |
| 581-1398, gnl|Mm7|chr13 (72941462-72940765) | |
| 741-1209, gnl|bosTau2|chr19 (42998418-42997955) | |
| 741-1209, gnl|Hg17|chr17 (63328677-63329154) | |
| 741-1209, gnl|Mm7|chr13 (72941314-72940923) | |
| 1446-1751, gnl|bosTau2|chr25 (16852976-16852683) | |
| 1446-1751, gnl|Hg17|chr4 (155803895-155804193) | |
| 1446-1751, gnl|Mm7|chr13 (72940724-72940460) | |
| 1755-2069, gnl|bosTau2|chr25 (16852655-16852347) | |
| 1755-2069, gnl|Hg17|chr4 (155804221-155804552) | |
| 1755-2069, gnl|Mm7|chr13 (72940436-72940155) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-224, gnl|bosTau2|chr3 (27769520-27769740) | |
| 3-224, gnl|canFam2|chr6 (43686681-43686822) | |
| 3-224, gnl|dasNov1|scaffold_4801 (14870-14727) | |
| 3-224, gnl|Hg17|chr1 (111703940-111703716) | |
| 3-224, gnl|hg17|chr4 (155802255-155802376) | |
| 3-224, gnl|loxAfr1|scaffold_6961 (45648-45503) | |
| 3-224, gnl|mm7|chr13 (72941962-72941810) | |
| 3-224, gnl|Mm7|chr3 (105777767-105777989) | |
| 3-224, gnl|monDom2|scaffold_0 (4376632-4376788) | |
| 3-224, gnl|oryCun1|scaffold_174962 (99958-100100) | |
| 3-224, gnl|panTro1|chr3 (173165901-173166022) | |
| 3-224, gnl|rheMac2|chr5 (146725421-146725542) | |
| 3-224, gnl|rn3|chr2 (201169633-201169781) | |
| 337-560, gnl|bosTau2|chr25 (16854169-16853944) | |
| 337-560, gnl|Hg17|chr4 (155802785-155802994) | |
| 337-560, gnl|Mm7|chr13 (72941700-72941459) | |
| 581-1398, gnl|bosTau2|chr25 (16853947-16853179) | |
| 581-1398, gnl|Hg17|chr4 (155802991-155803809) | |
| 581-1398, gnl|Mm7|chr13 (72941462-72940765) | |
| 741-1209, gnl|bosTau2|chr19 (42998418-42997955) | |
| 741-1209, gnl|Hg17|chr17 (63328677-63329154) | |
| 741-1209, gnl|Mm7|chr13 (72941314-72940923) | |
| 1446-1751, gnl|bosTau2|chr25 (16852976-16852683) | |
| 1446-1751, gnl|Hg17|chr4 (155803895-155804193) | |
| 1446-1751, gnl|Mm7|chr13 (72940724-72940460) | |
| 1755-2069, gnl|bosTau2|chr25 (16852655-16852347) | |
| 1755-2069, gnl|Hg17|chr4 (155804221-155804552) | |
| 1755-2069, gnl|Mm7|chr13 (72940436-72940155) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| cmu (0.372787) | |
| fty (0.351679) | |
| cut (0.339847) | |
| nco (0.323468) | |
| cte (0.29274) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| fco (0.157208) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ute (0.132784) | |
| ret (0.128733) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.372787) | |
| fty (0.351679) | |
| cut (0.339847) | |
| nco (0.323468) | |
| cte (0.29274) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| fco (0.157208) | |
| cag (0.151194) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| csk (0.140746) | |
| ute (0.132784) | |
| ret (0.128733) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) |