Ss1.1-Thy1-THY010069D05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCGGGACCTGCGGACTAGCTTGTGTCGCGGCAGCGGGAGCCCGGGTGGTCTCTGGTCCT CGCGTCGGCCCCCCGGAGCCGGACGCTGCCCCCGGCGCGGCGGGGAGGATGGTGCCGAGC GGCCCCGGGCCCGCCGCGCGCCGCCGTGAGTGAGCTCCGAGCGGCCGCGGGCGTCCGCCT AGCAGCTGGCCCGGCCGGGCCCGGGGCGCGCCGCTGCCCACCGGGGCGAGGTGCAGCTGA TGAGAATAATGTTCAGCATCAACCCCCTGGAGAACCTGAAGCTGTACATCAGCAGCCGGC CCCCCTTGGTGGTCTTTATGATCAGCGTAAGCGCCATGGCCATAGCGTTCCTGACCTTGG GCTATTTCTTCAAAATCAAGGAGATCAAGTCACCGGAAATGGCAGAGGATTGGAATACTT TTCTGCTGCGGTTTAATGATTTGGACTTGTGCGTATCAGAGAATGAAACATTAAAGCATC TCACAAATGACACCACAACCCCGGAAAGCACAATGACCAGCGGCCAGGCCAGAACGTCCA CCCAGTCCCCGCAGTCCCTGGAGGACTCAGGCCCAGTGAACATCTCAGTGGCAATCACCC TAACCCTGGACCCACTCAAACCCTTCGGCGGGTACTCTCGCAATGTCACCCATCTGTACT CGACCATCCTAGGGCATCAGATTGGACTTTCAGGCAGGGAGGCCCACGAGGAGATAAACA TTACCTTCACCCTGCCCACAGCCTGGAGCTCGGACGACTGTGCCCTTCACGCTCACTGTG AGCAGGTGGTGTTCACGGCCTGCATGACCCTCACCGCCAACCCCGGCGTGTTCCCGGTCA CCGTACAGCCGCCGCACTGCGTTCCCGACACGTACAGCAACGCCACGCTCTGGTACAAGA TCTTCACAACTGCCAGAGATGCCAACACAAAATACGCTCAAGACTACAACCCTTTCTGGT GTTACAAGGGGGCCATCGGAAAAGTCTATCATGCTTTAAATCCCAAGCTTACGGTTATTG TTCCAGATGATGACCGTTCATTAATAAACCTGCACCTCATGCACACCAGTTACTTCCTCT TCGTGATGGTGATAACGATGTTTTGCTACGCGGTTATCAAAGGCAGACCCAGCAAGCTGC GTCAGAGCAATCCCGAATTCTGTCCTGAGAAGGTGGCTTTGGCTGACGCCTAATCTCACA ACTGCCGTTTTCGGAGAGAGACAGAGCGAACCATCTTCATTGCCTGCTGAACCCAGCCTG GGCCTGGACACTCTGTGAATACATTATCTTGCAATGTTGGGTCACTCCAGCCAAAGACAT TTCAAGTGCCTGTAACTGATTTGTACATATTTATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCGGGACCTGCGGACTAGCTTGTGTCGCGGCAGCGGGAGCCCGGGTGGTCTCTGGTCCT CGCGTCGGCCCCCCGGAGCCGGACGCTGCCCCCGGCGCGGCGGGGAGGATGGTGCCGAGC GGCCCCGGGCCCGCCGCGCGCCGCCGTGAGTGAGCTCCGAGCGGCCGCGGGCGTCCGCCT AGCAGCTGGCCCGGCCGGGCCCGGGGCGCGCCGCTGCCCACCGGGGCGAGGTGCAGCTGA TGAGAATAATGTTCAGCATCAACCCCCTGGAGAACCTGAAGCTGTACATCAGCAGCCGGC CCCCCTTGGTGGTCTTTATGATCAGCGTAAGCGCCATGGCCATAGCGTTCCTGACCTTGG GCTATTTCTTCAAAATCAAGGAGATCAAGTCACCGGAAATGGCAGAGGATTGGAATACTT TTCTGCTGCGGTTTAATGATTTGGACTTGTGCGTATCAGAGAATGAAACATTAAAGCATC TCACAAATGACACCACAACCCCGGAAAGCACAATGACCAGCGGCCAGGCCAGAACGTCCA CCCAGTCCCCGCAGTCCCTGGAGGACTCAGGCCCAGTGAACATCTCAGTGGCAATCACCC TAACCCTGGACCCACTCAAACCCTTCGGCGGGTACTCTCGCAATGTCACCCATCTGTACT CGACCATCCTAGGGCATCAGATTGGACTTTCAGGCAGGGAGGCCCACGAGGAGATAAACA TTACCTTCACCCTGCCCACAGCCTGGAGCTCGGACGACTGTGCCCTTCACGCTCACTGTG AGCAGGTGGTGTTCACGGCCTGCATGACCCTCACCGCCAACCCCGGCGTGTTCCCGGTCA CCGTACAGCCGCCGCACTGCGTTCCCGACACGTACAGCAACGCCACGCTCTGGTACAAGA TCTTCACAACTGCCAGAGATGCCAACACAAAATACGCTCAAGACTACAACCCTTTCTGGT GTTACAAGGGGGCCATCGGAAAAGTCTATCATGCTTTAAATCCCAAGCTTACGGTTATTG TTCCAGATGATGACCGTTCATTAATAAACCTGCACCTCATGCACACCAGTTACTTCCTCT TCGTGATGGTGATAACGATGTTTTGCTACGCGGTTATCAAAGGCAGACCCAGCAAGCTGC GTCAGAGCAATCCCGAATTCTGTCCTGAGAAGGTGGCTTTGGCTGACGCCTAATCTCACA ACTGCCGTTTTCGGAGAGAGACAGAGCGAACCATCTTCATTGCCTGCTGAACCCAGCCTG GGCCTGGACACTCTGTGAATACATTATCTTGCAATGTTGGGTCACTCCAGCCAAAGACAT TTCAAGTGCCTGTAACTGATTTGTACATATTTATAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 2-107, gnl|bosTau2|chr10 (16602238-16602133) | |
| 2-107, gnl|Hg17|chr7 (65830379-65830476) | |
| 2-107, gnl|Mm7|chr5 (129460194-129460297) | |
| 403-694, gnl|bosTau2|chr25 (24147165-24147456) | |
| 403-694, gnl|canFam2|chr6 (4216374-4216172) | |
| 403-694, gnl|danRer3|chrNA (76092546-76092344) | |
| 403-694, gnl|dasNov1|scaffold_43382 (47861-48063) | |
| 403-694, gnl|echTel1|scaffold_271963 (2112-1910) | |
| 403-694, gnl|galGal2|chr19 (4753969-4753767) | |
| 403-694, gnl|hg17|chr4 (127002529-127002739) | |
| 403-694, gnl|Hg17|chr7 (65854108-65854399) | |
| 403-694, gnl|mm7|chr5 (129469862-129469661) | |
| 403-694, gnl|Mm7|chr5 (129469573-129469864) | |
| 403-694, gnl|monDom2|scaffold_81 (151053-151255) | |
| 403-694, gnl|oryCun1|scaffold_152981 (4854-4652) | |
| 403-694, gnl|panTro1|chr3 (143858502-143858712) | |
| 403-694, gnl|rheMac2|chr5 (118060794-118060993) | |
| 403-694, gnl|rn3|chr12 (27341775-27341976) | |
| 403-694, gnl|tetNig1|chrUn_random (29222483-29222278) | |
| 403-694, gnl|xenTro1|scaffold_1705 (101348-101550) | |
| 845-1027, gnl|bosTau2|chr25 (24150208-24150390) | |
| 845-1027, gnl|canFam2|chr6 (4218946-4219161) | |
| 845-1027, gnl|canFam2|chr6 (4219155-4218972) | |
| 845-1027, gnl|danRer3|chrNA (76100067-76100267) | |
| 845-1027, gnl|danRer3|chrNA (76100260-76100078) | |
| 845-1027, gnl|dasNov1|scaffold_43382 (44354-44138) | |
| 845-1027, gnl|dasNov1|scaffold_43382 (44144-44327) | |
| 845-1027, gnl|echTel1|scaffold_271963 (4774-4987) | |
| 845-1027, gnl|echTel1|scaffold_271963 (4981-4798) | |
| 845-1027, gnl|galGal2|chr19 (4756220-4756435) | |
| 845-1027, gnl|galGal2|chr19 (4756429-4756246) | |
| 845-1027, gnl|hg17|chr4 (127002192-127002375) | |
| 845-1027, gnl|hg17|chr7 (65860062-65860280) | |
| 845-1027, gnl|Hg17|chr7 (65860089-65860271) | |
| 845-1027, gnl|loxAfr1|scaffold_4455 (49963-49752) | |
| 845-1027, gnl|loxAfr1|scaffold_4455 (49758-49941) | |
| 845-1027, gnl|mm7|chr5 (129476051-129476261) | |
| 845-1027, gnl|mm7|chr5 (129476254-129476072) | |
| 845-1027, gnl|Mm7|chr5 (129476070-129476252) | |
| 845-1027, gnl|monDom2|scaffold_81 (148177-147967) | |
| 845-1027, gnl|monDom2|scaffold_81 (147973-148156) | |
| 845-1027, gnl|oryCun1|scaffold_141118 (3823-4038) | |
| 845-1027, gnl|oryCun1|scaffold_141118 (4031-3849) | |
| 845-1027, gnl|panTro1|chr3 (143858165-143858348) | |
| 845-1027, gnl|panTro1|chr6 (67583766-67583984) | |
| 845-1027, gnl|rheMac2|chr3 (58095513-58095295) | |
| 845-1027, gnl|rheMac2|chr5 (118060461-118060640) | |
| 845-1027, gnl|rn3|chr12 (27335999-27335789) | |
| 845-1027, gnl|rn3|chr12 (27335796-27335978) | |
| 845-1027, gnl|tetNig1|chrUn_random (29224340-29224536) | |
| 845-1027, gnl|tetNig1|chrUn_random (29224529-29224347) | |
| 845-1027, gnl|xenTro1|scaffold_1705 (100168-99954) | |
| 845-1027, gnl|xenTro1|scaffold_1705 (99960-100143) | |
| 1171-1356, gnl|bosTau2|chr25 (24152723-24152908) | |
| 1171-1356, gnl|Hg17|chr7 (65864637-65864823) | |
| 1171-1356, gnl|Mm7|chr5 (129479099-129479280) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-107, gnl|bosTau2|chr10 (16602238-16602133) | |
| 2-107, gnl|Hg17|chr7 (65830379-65830476) | |
| 2-107, gnl|Mm7|chr5 (129460194-129460297) | |
| 403-694, gnl|bosTau2|chr25 (24147165-24147456) | |
| 403-694, gnl|canFam2|chr6 (4216374-4216172) | |
| 403-694, gnl|danRer3|chrNA (76092546-76092344) | |
| 403-694, gnl|dasNov1|scaffold_43382 (47861-48063) | |
| 403-694, gnl|echTel1|scaffold_271963 (2112-1910) | |
| 403-694, gnl|galGal2|chr19 (4753969-4753767) | |
| 403-694, gnl|hg17|chr4 (127002529-127002739) | |
| 403-694, gnl|Hg17|chr7 (65854108-65854399) | |
| 403-694, gnl|mm7|chr5 (129469862-129469661) | |
| 403-694, gnl|Mm7|chr5 (129469573-129469864) | |
| 403-694, gnl|monDom2|scaffold_81 (151053-151255) | |
| 403-694, gnl|oryCun1|scaffold_152981 (4854-4652) | |
| 403-694, gnl|panTro1|chr3 (143858502-143858712) | |
| 403-694, gnl|rheMac2|chr5 (118060794-118060993) | |
| 403-694, gnl|rn3|chr12 (27341775-27341976) | |
| 403-694, gnl|tetNig1|chrUn_random (29222483-29222278) | |
| 403-694, gnl|xenTro1|scaffold_1705 (101348-101550) | |
| 845-1027, gnl|bosTau2|chr25 (24150208-24150390) | |
| 845-1027, gnl|canFam2|chr6 (4218946-4219161) | |
| 845-1027, gnl|canFam2|chr6 (4219155-4218972) | |
| 845-1027, gnl|danRer3|chrNA (76100067-76100267) | |
| 845-1027, gnl|danRer3|chrNA (76100260-76100078) | |
| 845-1027, gnl|dasNov1|scaffold_43382 (44354-44138) | |
| 845-1027, gnl|dasNov1|scaffold_43382 (44144-44327) | |
| 845-1027, gnl|echTel1|scaffold_271963 (4774-4987) | |
| 845-1027, gnl|echTel1|scaffold_271963 (4981-4798) | |
| 845-1027, gnl|galGal2|chr19 (4756220-4756435) | |
| 845-1027, gnl|galGal2|chr19 (4756429-4756246) | |
| 845-1027, gnl|hg17|chr4 (127002192-127002375) | |
| 845-1027, gnl|hg17|chr7 (65860062-65860280) | |
| 845-1027, gnl|Hg17|chr7 (65860089-65860271) | |
| 845-1027, gnl|loxAfr1|scaffold_4455 (49963-49752) | |
| 845-1027, gnl|loxAfr1|scaffold_4455 (49758-49941) | |
| 845-1027, gnl|mm7|chr5 (129476051-129476261) | |
| 845-1027, gnl|mm7|chr5 (129476254-129476072) | |
| 845-1027, gnl|Mm7|chr5 (129476070-129476252) | |
| 845-1027, gnl|monDom2|scaffold_81 (148177-147967) | |
| 845-1027, gnl|monDom2|scaffold_81 (147973-148156) | |
| 845-1027, gnl|oryCun1|scaffold_141118 (3823-4038) | |
| 845-1027, gnl|oryCun1|scaffold_141118 (4031-3849) | |
| 845-1027, gnl|panTro1|chr3 (143858165-143858348) | |
| 845-1027, gnl|panTro1|chr6 (67583766-67583984) | |
| 845-1027, gnl|rheMac2|chr3 (58095513-58095295) | |
| 845-1027, gnl|rheMac2|chr5 (118060461-118060640) | |
| 845-1027, gnl|rn3|chr12 (27335999-27335789) | |
| 845-1027, gnl|rn3|chr12 (27335796-27335978) | |
| 845-1027, gnl|tetNig1|chrUn_random (29224340-29224536) | |
| 845-1027, gnl|tetNig1|chrUn_random (29224529-29224347) | |
| 845-1027, gnl|xenTro1|scaffold_1705 (100168-99954) | |
| 845-1027, gnl|xenTro1|scaffold_1705 (99960-100143) | |
| 1171-1356, gnl|bosTau2|chr25 (24152723-24152908) | |
| 1171-1356, gnl|Hg17|chr7 (65864637-65864823) | |
| 1171-1356, gnl|Mm7|chr5 (129479099-129479280) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| pty (0.428143) | |
| duo (0.345602) | |
| med (0.232504) | |
| fli (0.202881) | |
| nje (0.16592) | |
| liv (0.146284) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.428143) | |
| duo (0.345602) | |
| med (0.232504) | |
| fli (0.202881) | |
| nje (0.16592) | |
| liv (0.146284) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) | |
| cty (0.10408) |