Non-Coding RNA Search

Ss1.1-Thy1-THY010070D10.5

Sequence:


               
               AGTATAAACAAGGCATCCGACTGGTTGGGCGGATTTTTCTTTTCCTTCTTCCCGCGCGCT
TTCGCTCCCAGTCCTTTGGTTGCGTTGTGGGCGCGCGGCACACAGCCGGGAGGCCGAGGA
CCCGGGGCCGTCTGCAGGAAAGCATGCCTCAGACTCCTCCCTTTTCAGCAATGTTTGACA
GCAGTGGTTACAACCGAAACCTCTATCAGTCTGCGGAGGACAGCTGTGGAGGGTTGTATT
ACCATGACAACAACCTCCTCTCTGGGTCTCTGGAGGCGCTCATCCAGCACCTGGTACCTA
GCGTGGACTACTATCCAGACAGAACCTACATCTTCACCTTCCTGCTCAGCTCCCGGCTGT
TCATGCATCCGTATGAGCTGATGGCCAAGGTGTGCCACTTGTGTGTTGAGCACCAGCGAC
TCAGTGAGCCTGATGGGGATAAGAGCCAAATAAGAAAAATTGCACCCAAAATTCTTCAAC
TCCTGACGGAATGGACAGAAACCTTTCCTTATGATTTTCGGGATGAAAGAATGATGAGAA
ACTTAAAAGACCTGGCCCACCAAATAGCCAGTGGCGAGGAGGTGGGTAAAACTGAATTGA
GTGCAACTGCTGGAATTTCCAGGCGCAAGCTCGCCGGGGGGTGGTGCTTAATTATGCAAC
AGAATCTCCCTGCTTCTCTTCTGTTTTGCCTTTGGGCAGGTCTTCTCCATAGCGTGCTGG
TCTGTCTGGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATAAACAAGGCATCCGACTGGTTGGGCGGATTTTTCTTTTCCTTCTTCCCGCGCGCT
TTCGCTCCCAGTCCTTTGGTTGCGTTGTGGGCGCGCGGCACACAGCCGGGAGGCCGAGGA
CCCGGGGCCGTCTGCAGGAAAGCATGCCTCAGACTCCTCCCTTTTCAGCAATGTTTGACA
GCAGTGGTTACAACCGAAACCTCTATCAGTCTGCGGAGGACAGCTGTGGAGGGTTGTATT
ACCATGACAACAACCTCCTCTCTGGGTCTCTGGAGGCGCTCATCCAGCACCTGGTACCTA
GCGTGGACTACTATCCAGACAGAACCTACATCTTCACCTTCCTGCTCAGCTCCCGGCTGT
TCATGCATCCGTATGAGCTGATGGCCAAGGTGTGCCACTTGTGTGTTGAGCACCAGCGAC
TCAGTGAGCCTGATGGGGATAAGAGCCAAATAAGAAAAATTGCACCCAAAATTCTTCAAC
TCCTGACGGAATGGACAGAAACCTTTCCTTATGATTTTCGGGATGAAAGAATGATGAGAA
ACTTAAAAGACCTGGCCCACCAAATAGCCAGTGGCGAGGAGGTGGGTAAAACTGAATTGA
GTGCAACTGCTGGAATTTCCAGGCGCAAGCTCGCCGGGGGGTGGTGCTTAATTATGCAAC
AGAATCTCCCTGCTTCTCTTCTGTTTTGCCTTTGGGCAGGTCTTCTCCATAGCGTGCTGG
TCTGTCTGGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22477330|gb|AAH36784.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22477330|gb|AAH36784.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               442-561, - strand, RNAz p=0.582442

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-561, - strand, RNAz p=0.582442

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               136-319, gnl|bosTau2|chr6 (54571511-54571328)
               

               
               136-319, gnl|Hg17|chr4 (82737849-82737666)
               

               
               136-319, gnl|Mm7|chr5 (98458029-98457846)
               


               
               442-732, gnl|bosTau2|chr6 (54569093-54568801)
               

               
               442-732, gnl|Hg17|chr4 (82735123-82734833)
               

               
               442-732, gnl|Mm7|chr5 (98455743-98455442)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-319, gnl|bosTau2|chr6 (54571511-54571328)
               

               
               136-319, gnl|Hg17|chr4 (82737849-82737666)
               

               
               136-319, gnl|Mm7|chr5 (98458029-98457846)
               


               
               442-732, gnl|bosTau2|chr6 (54569093-54568801)
               

               
               442-732, gnl|Hg17|chr4 (82735123-82734833)
               

               
               442-732, gnl|Mm7|chr5 (98455743-98455442)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	136-319, gnl\|bosTau2\|chr6 (54571511-54571328)
	136-319, gnl\|Hg17\|chr4 (82737849-82737666)
	136-319, gnl\|Mm7\|chr5 (98458029-98457846)

	442-732, gnl\|bosTau2\|chr6 (54569093-54568801)
	442-732, gnl\|Hg17\|chr4 (82735123-82734833)
	442-732, gnl\|Mm7\|chr5 (98455743-98455442)