Ss1.1-Thy1-THY010070G08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAGCGAGGTCTGAAGAGTTGCTTGCGAGTTCAAGTCGTCATTGTTGGGGTTGTTCTCTT GCGCTCGGGAGCTGCACAAGATTGGGGCCTGGTCAGTGCTTTGTCTACGGGTGCAATGGC GCTTCTCCGGGGCGTGTGGGGCGTGCTGAGTGCCCTGGGAAAGTCAGGAGCGGACCTCTG TGCGGTTTGTGGAAGTCGACTGCGCTCTCCGTTCAGTTTTGCGTATGTACCAAGATGGTT TTCATCCACCCTGAGTGGTTTTCCAAAGAAGCCTATGACTTCATACGTTCGATTTTCTAA AGAACAGCTACCCATATTTAAAGCTCAGAACCCAGATGCAAAAAATTCAGAACTAATTAA AAAAATTGCTGAGCTGTGGAGGGAACTTCCTGATTCAGAGAAAAAGATATATGAAGATGC TTATAGGGCAGACTGGCAGGTGTACAAAGAAGAGGTAAACAGAATTCAAGAACAGCTAAC TCCAAGTCAAATGGTATCTTTGGAAAAAGAAATCATGCAGAAACGTTTAAAAAAGAAAGC GTTAATCAAAAAGAGAGAATTAACAATGCTTGGAAAACCAAAAAGACCTCGATCAGCTTA TAACATTTTTATTGCTGAACGCTTTCAGGAAGCTAAGGATGGTCCATCACAGGTAAAGCT GAAAACTATAAATGAAAACTGGAAAAATCTCTCTAGTTCTCAAAAGCAAGTATATATTCA ACTTGCTGAAGATGATAAAGTTCGTTATTATAATGAAATGAAATCTTGGGAAGAACAAAT GGTTGAAGTTGGGCGAAACGATCTTATACGTCGCTCAATGAAACATTCAGCAAAGAAAGA CACTGAGGAGTGTTGAAATAGAAGGTTGAGCTATGTTCGTAATGGATAGACACGAGAAAC CAATTAGGTCTCAATACCTGAAGCTGTTGTAAAATTAGAAAGGATAAAGTTGGTAAACAT TTTATATTTAATTCCTTTTCTTTAGCCTATGGACTTTTGCCAGCCAGTTCAATACATAGG TATTGATGTCTTACTTTGGAAAACCCAAACAGAAAAGAATTTATGCAGAATTTATTTTGT GTTTAGGAACCACTAAGCATCAGAATAATTCATGAAATGTAGCAGTGAATCGTTTTACCT TTGTTAAAGGTAAATCAGACTGTGAAGACTTTTTATACTTGATGGCTATGGAAAGAGTAT TCTTGTTTCCTTATATTATGGAGGCAAGTTTCCTATTCAAAAATGTTTCAAATTTTGTAG AAGCCATAGTGTTCTATGATATAATTGTGTATTTTTAAAAGAGCATCCAGAACTCATCTT GGTAAATTCCAAATCCTAGGTATAATTCATGTTGTAGTCAGAGTCGATGGTTGTATGTGG AAAGGATTGCTGGTGCAACTTTTATAAAAGTGAGAGATTTATAACCCTTTTCTTCATCAT CTTTTTTCCTATAGTACAAACTAAAAAATTATGTACCAAATCTATGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAGCGAGGTCTGAAGAGTTGCTTGCGAGTTCAAGTCGTCATTGTTGGGGTTGTTCTCTT GCGCTCGGGAGCTGCACAAGATTGGGGCCTGGTCAGTGCTTTGTCTACGGGTGCAATGGC GCTTCTCCGGGGCGTGTGGGGCGTGCTGAGTGCCCTGGGAAAGTCAGGAGCGGACCTCTG TGCGGTTTGTGGAAGTCGACTGCGCTCTCCGTTCAGTTTTGCGTATGTACCAAGATGGTT TTCATCCACCCTGAGTGGTTTTCCAAAGAAGCCTATGACTTCATACGTTCGATTTTCTAA AGAACAGCTACCCATATTTAAAGCTCAGAACCCAGATGCAAAAAATTCAGAACTAATTAA AAAAATTGCTGAGCTGTGGAGGGAACTTCCTGATTCAGAGAAAAAGATATATGAAGATGC TTATAGGGCAGACTGGCAGGTGTACAAAGAAGAGGTAAACAGAATTCAAGAACAGCTAAC TCCAAGTCAAATGGTATCTTTGGAAAAAGAAATCATGCAGAAACGTTTAAAAAAGAAAGC GTTAATCAAAAAGAGAGAATTAACAATGCTTGGAAAACCAAAAAGACCTCGATCAGCTTA TAACATTTTTATTGCTGAACGCTTTCAGGAAGCTAAGGATGGTCCATCACAGGTAAAGCT GAAAACTATAAATGAAAACTGGAAAAATCTCTCTAGTTCTCAAAAGCAAGTATATATTCA ACTTGCTGAAGATGATAAAGTTCGTTATTATAATGAAATGAAATCTTGGGAAGAACAAAT GGTTGAAGTTGGGCGAAACGATCTTATACGTCGCTCAATGAAACATTCAGCAAAGAAAGA CACTGAGGAGTGTTGAAATAGAAGGTTGAGCTATGTTCGTAATGGATAGACACGAGAAAC CAATTAGGTCTCAATACCTGAAGCTGTTGTAAAATTAGAAAGGATAAAGTTGGTAAACAT TTTATATTTAATTCCTTTTCTTTAGCCTATGGACTTTTGCCAGCCAGTTCAATACATAGG TATTGATGTCTTACTTTGGAAAACCCAAACAGAAAAGAATTTATGCAGAATTTATTTTGT GTTTAGGAACCACTAAGCATCAGAATAATTCATGAAATGTAGCAGTGAATCGTTTTACCT TTGTTAAAGGTAAATCAGACTGTGAAGACTTTTTATACTTGATGGCTATGGAAAGAGTAT TCTTGTTTCCTTATATTATGGAGGCAAGTTTCCTATTCAAAAATGTTTCAAATTTTGTAG AAGCCATAGTGTTCTATGATATAATTGTGTATTTTTAAAAGAGCATCCAGAACTCATCTT GGTAAATTCCAAATCCTAGGTATAATTCATGTTGTAGTCAGAGTCGATGGTTGTATGTGG AAAGGATTGCTGGTGCAACTTTTATAAAAGTGAGAGATTTATAACCCTTTTCTTCATCAT CTTTTTTCCTATAGTACAAACTAAAAAATTATGTACCAAATCTATGCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1022-1295, + strand, RNAz p=0.924896 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1022-1295, + strand, RNAz p=0.924896 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_003201, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 22-216, gnl|bosTau2|chr28 (34722574-34722382) | |
| 22-216, gnl|canFam2|chr4 (13788196-13788409) | |
| 22-216, gnl|dasNov1|scaffold_12170 (3579-3790) | |
| 22-216, gnl|echTel1|scaffold_298140 (50703-50496) | |
| 22-216, gnl|hg17|chr10 (59815166-59815375) | |
| 22-216, gnl|Hg17|chr10 (59815223-59815414) | |
| 22-216, gnl|loxAfr1|scaffold_1309 (34427-34755) | |
| 22-216, gnl|mm7|chr10 (70840298-70840096) | |
| 22-216, gnl|Mm7|chr10 (70840250-70840055) | |
| 22-216, gnl|oryCun1|scaffold_211134 (9759-9554) | |
| 22-216, gnl|panTro1|chr8 (60645970-60646179) | |
| 22-216, gnl|rheMac2|chr9 (78934503-78934291) | |
| 22-216, gnl|rn3|chr20 (18114383-18114587) | |
| 405-557, gnl|bosTau2|chr28 (34719725-34719573) | |
| 405-557, gnl|canFam2|chr4 (13791464-13791585) | |
| 405-557, gnl|dasNov1|scaffold_186282 (1287-1170) | |
| 405-557, gnl|echTel1|scaffold_284274 (50520-50635) | |
| 405-557, gnl|Hg17|chr10 (59818434-59818586) | |
| 405-557, gnl|hg17|chr7 (1427758-1427879) | |
| 405-557, gnl|loxAfr1|scaffold_1309 (34987-35108) | |
| 405-557, gnl|mm7|chr10 (70837227-70837111) | |
| 405-557, gnl|Mm7|chr10 (70837231-70837079) | |
| 405-557, gnl|monDom2|scaffold_10 (13494929-13494820) | |
| 405-557, gnl|oryCun1|scaffold_211134 (8983-8880) | |
| 405-557, gnl|panTro1|chr6 (1540670-1540791) | |
| 405-557, gnl|rheMac2|chr9 (78931178-78931057) | |
| 405-557, gnl|rn3|chr20 (18117665-18117786) | |
| 707-1487, gnl|bosTau2|chr28 (34711224-34710438) | |
| 707-1487, gnl|Hg17|chr10 (59824691-59825461) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-216, gnl|bosTau2|chr28 (34722574-34722382) | |
| 22-216, gnl|canFam2|chr4 (13788196-13788409) | |
| 22-216, gnl|dasNov1|scaffold_12170 (3579-3790) | |
| 22-216, gnl|echTel1|scaffold_298140 (50703-50496) | |
| 22-216, gnl|hg17|chr10 (59815166-59815375) | |
| 22-216, gnl|Hg17|chr10 (59815223-59815414) | |
| 22-216, gnl|loxAfr1|scaffold_1309 (34427-34755) | |
| 22-216, gnl|mm7|chr10 (70840298-70840096) | |
| 22-216, gnl|Mm7|chr10 (70840250-70840055) | |
| 22-216, gnl|oryCun1|scaffold_211134 (9759-9554) | |
| 22-216, gnl|panTro1|chr8 (60645970-60646179) | |
| 22-216, gnl|rheMac2|chr9 (78934503-78934291) | |
| 22-216, gnl|rn3|chr20 (18114383-18114587) | |
| 405-557, gnl|bosTau2|chr28 (34719725-34719573) | |
| 405-557, gnl|canFam2|chr4 (13791464-13791585) | |
| 405-557, gnl|dasNov1|scaffold_186282 (1287-1170) | |
| 405-557, gnl|echTel1|scaffold_284274 (50520-50635) | |
| 405-557, gnl|Hg17|chr10 (59818434-59818586) | |
| 405-557, gnl|hg17|chr7 (1427758-1427879) | |
| 405-557, gnl|loxAfr1|scaffold_1309 (34987-35108) | |
| 405-557, gnl|mm7|chr10 (70837227-70837111) | |
| 405-557, gnl|Mm7|chr10 (70837231-70837079) | |
| 405-557, gnl|monDom2|scaffold_10 (13494929-13494820) | |
| 405-557, gnl|oryCun1|scaffold_211134 (8983-8880) | |
| 405-557, gnl|panTro1|chr6 (1540670-1540791) | |
| 405-557, gnl|rheMac2|chr9 (78931178-78931057) | |
| 405-557, gnl|rn3|chr20 (18117665-18117786) | |
| 707-1487, gnl|bosTau2|chr28 (34711224-34710438) | |
| 707-1487, gnl|Hg17|chr10 (59824691-59825461) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| tes (0.831255) | |
| clu (0.358938) | |
| cte (0.29274) | |
| ret (0.257467) | |
| fty (0.17584) | |
| cje (0.165235) | |
| fco (0.157208) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ecc (0.115035) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.831255) | |
| clu (0.358938) | |
| cte (0.29274) | |
| ret (0.257467) | |
| fty (0.17584) | |
| cje (0.165235) | |
| fco (0.157208) | |
| thg (0.126791) | |
| eep (0.122564) | |
| ecc (0.115035) |