Non-Coding RNA Search

Ss1.1-Thy1-THY010070G10.5

Sequence:


               
               ATCATATCTTAATAATCATAAACGTGTACACAGGTCCAGAAAAACAAATATAGTTCATGA
TTCTGGGGAAATTTTCAGTGCAAATTTAGTTGTTAAAGAAGGTCAGAAAATTCCTGTTGG
GAAAAAATTGCACTATTGTGCTTACTGTGGGAAAGCCTTCAGGTACAGTGCTAACCTCAT
CAAGCACCAGCGGCTTCACAGTGAAGAGAAGCCCTACAAGTGTGACGAGTGTGGGAAAGC
CTTCCGCCAGAGCTGCGAGTTCATTAGTCACCGCAGGATGCACTCTGGGGAGATCCCCTA
CCGCTGTGATGAGTGTGGGAAGATGTTCAATCAGAGACCCAACCTCATGAAGCATCAGAG
GATCCACACTGGGGAGAAGCCCTACAAGTGTGGCGAGTGTGGGAAGCACTTCAGTGCCTA
CTCTTCCCTCATTTATCACCAGAGGATCCACACTGGAGAAAAGCCCTACAAGTGCAGCGA
CTGTGGGAAGGCCTTCAGTGATGGCTCGATCCTCATCCGACACCGTCGGACTCACACTGG
GGAGAAGCCCTATGAGTGCAAAGAATGTGGCAAAGGCTTTACACAAAGTTCCAACCTTAT
CCAACATCAAAGAATTCACACTGGAGAGAAACCCTATAAATGTAATGAATGTGAGAAAGC
CTTTATCCAAAAGACAAAACTTGTTGAACATCAGAGAAGCCACACTGGAGAAAAGCCTTA
TGAATGTAATGACTGTGGCAAAGTCTTCAGCCAGAGCACACACCTCATCCAGCATCAGAG
GATCCACACGGGGGAGAAGCCCTACAAGTGCAGTGAGTGTGGCAAGGCCTTCCACAACAG
TTCCAGACTCATCCACCATCAGAGGTCACACCATGGAGAGAAGCCGTACAAATGTGCTGA
TTGCAAGAAAGCCTTTAGCCAGGGCACCTACCTCATCCAGCACCGGAGGATCCATACCGG
GGAGAAGCCCTACAAGTGTGGCGAGTGTGGGAAGGCCTTCCGGCACAGTTCCAACATGTC
CCAGCATCAGAGGATTCACCTCCGGGGGGATGACTTTTCCCCATGACGTCTGCTGTGCAC
TTCCTCCACGAGCCTTGCCCACCCCTTTATTTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATATCTTAATAATCATAAACGTGTACACAGGTCCAGAAAAACAAATATAGTTCATGA
TTCTGGGGAAATTTTCAGTGCAAATTTAGTTGTTAAAGAAGGTCAGAAAATTCCTGTTGG
GAAAAAATTGCACTATTGTGCTTACTGTGGGAAAGCCTTCAGGTACAGTGCTAACCTCAT
CAAGCACCAGCGGCTTCACAGTGAAGAGAAGCCCTACAAGTGTGACGAGTGTGGGAAAGC
CTTCCGCCAGAGCTGCGAGTTCATTAGTCACCGCAGGATGCACTCTGGGGAGATCCCCTA
CCGCTGTGATGAGTGTGGGAAGATGTTCAATCAGAGACCCAACCTCATGAAGCATCAGAG
GATCCACACTGGGGAGAAGCCCTACAAGTGTGGCGAGTGTGGGAAGCACTTCAGTGCCTA
CTCTTCCCTCATTTATCACCAGAGGATCCACACTGGAGAAAAGCCCTACAAGTGCAGCGA
CTGTGGGAAGGCCTTCAGTGATGGCTCGATCCTCATCCGACACCGTCGGACTCACACTGG
GGAGAAGCCCTATGAGTGCAAAGAATGTGGCAAAGGCTTTACACAAAGTTCCAACCTTAT
CCAACATCAAAGAATTCACACTGGAGAGAAACCCTATAAATGTAATGAATGTGAGAAAGC
CTTTATCCAAAAGACAAAACTTGTTGAACATCAGAGAAGCCACACTGGAGAAAAGCCTTA
TGAATGTAATGACTGTGGCAAAGTCTTCAGCCAGAGCACACACCTCATCCAGCATCAGAG
GATCCACACGGGGGAGAAGCCCTACAAGTGCAGTGAGTGTGGCAAGGCCTTCCACAACAG
TTCCAGACTCATCCACCATCAGAGGTCACACCATGGAGAGAAGCCGTACAAATGTGCTGA
TTGCAAGAAAGCCTTTAGCCAGGGCACCTACCTCATCCAGCACCGGAGGATCCATACCGG
GGAGAAGCCCTACAAGTGTGGCGAGTGTGGGAAGGCCTTCCGGCACAGTTCCAACATGTC
CCAGCATCAGAGGATTCACCTCCGGGGGGATGACTTTTCCCCATGACGTCTGCTGTGCAC
TTCCTCCACGAGCCTTGCCCACCCCTTTATTTATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57095736|ref|XP_539228.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57095736|ref|XP_539228.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               137-1099, gnl|bosTau2|chr13 (24162417-24163380)
               

               
               137-1099, gnl|Hg17|chr20 (18244141-18245104)
               

               
               137-1099, gnl|Mm7|chr5 (142277788-142278633)
               


               
               207-1050, gnl|bosTau2|chr10 (8996845-8996003)
               

               
               207-1050, gnl|Hg17|chr19 (42818650-42817755)
               

               
               207-1050, gnl|Mm7|chr2 (127310276-127309518)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-1099, gnl|bosTau2|chr13 (24162417-24163380)
               

               
               137-1099, gnl|Hg17|chr20 (18244141-18245104)
               

               
               137-1099, gnl|Mm7|chr5 (142277788-142278633)
               


               
               207-1050, gnl|bosTau2|chr10 (8996845-8996003)
               

               
               207-1050, gnl|Hg17|chr19 (42818650-42817755)
               

               
               207-1050, gnl|Mm7|chr2 (127310276-127309518)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               eru (0.120048)

	137-1099, gnl\|bosTau2\|chr13 (24162417-24163380)
	137-1099, gnl\|Hg17\|chr20 (18244141-18245104)
	137-1099, gnl\|Mm7\|chr5 (142277788-142278633)

	207-1050, gnl\|bosTau2\|chr10 (8996845-8996003)
	207-1050, gnl\|Hg17\|chr19 (42818650-42817755)
	207-1050, gnl\|Mm7\|chr2 (127310276-127309518)