Ss1.1-Thy1-THY010071B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAACAAGAGGAAGCCGCAGGCGGCAGGAGGAGGGGTGCGCGCGCTGGGGGCCCGGGAGA GCGCACTCGCTAGCTCGCTCCTCGCCTCGCTCTCCCCTTTAAACGCCCACTTCGGATGGG AAAAGAAGACAACTTGAAGTCAAGTTGCAATTAACTTCCGCGGCAGCCGCAGCTTAGCTG CGGCGGCACCAGAGGCAGAAGCCGCCGCCTCGGAAGTCCGACGCCGGCGCGTCCGCCTGG GGAGCTGCTCCTGGTCTCGGGCCGCGCTCGACAGCCACCGCCACCCCCAACGCCCATGCC TGAGTGATCTTTACAGAGTAACTGAGTATGGATCATTTGAACGAGGCAACTCAGGGGAAA GAACATTCAGAAATGTCTAACAATGTGAGTGATCCGAAGGGTCCACCAGCCAAGATTGCC CGCCTGGAGCAGAACGGGAGCCCACTAGGAAGAGGAAGGCTTGGGAGCACAGGTGCAAAA ATGCAGGGAGTGCCTTTAAAACACTCGGGCCATCTGATGAAAAGCAACCTTAGGAAAGGA ACCATGCTACCAGTTTTCTGCGTGGTGGAACATTATGAAAATGCCATCGAATATGATTGC AAGGAGGAGCATGCGGAATTTGTATTGGTGAGAAAGGATATGCTTTTCAACCAGCTGATA GAAATGGCCTTGCTGTCTCTGGGTTATTCGCATAGCTCTGCTGCCCAGGCCAAAGGGCTA ATCCAGGTTGGAAAGTGGAATCCAGTTCCACTGTCTTATGTGACAGACGCCCCTGATGCT ACAGTGGCAGATATGCTTCAAGACGTGTATCATGTGGTCACACTGAAAATTCAGTTACAC AGTTGCCCCAAACTGGAAGACTTGCCCCCAGAGCAGTGGTCGCACACCACCGTCAGGAAC GCACTGAAGGACTTACTGAAGGATATGAATCAGAGTTCCTTGGCCAAGGAGTGCCCCCTT TCACAGAGTATGATTTCTTCCATTGTGAACAGTACTTACTATGCAAATGTCTCAGCGGCA AAATGTCAAGAATTTGGAAGGTGGTACAAACATTTCAAGAAGACAAAAGACATGATGGTT GAGATGGATAGTCTTTCCGAACTATCCCAGCAAGGTGCCAACCACGTCAACTTTGGCCAG CAGCCGGTCCCAGGGAACACAGTGGAGCAGCCTCCATCCCCCGCGCAGCTCTCCCACGGC AGCCAACCCTCTGTCCGGACCCCTCTTCCGAACCTGCACCCTGGGCTCGTGTCAACGCCC ATCAGTCCTCAATTGGTCAACCAGCAGCTGGTGATGGCCCAGCTGCTGAACCAGCAGTAT GCAGTGAACAGACTTCTAGCCCAGCAGTCCTTAAACCAACAATACTTGAACCACCCTCCC CCTGTCAGTAGATCTATGAATAAGCCTTTGGAGCAACAGGTTTCCACCAACACAGAGGTG TCTTCCGAAATCTACCAGTGGGTACGTGATGAACTGAAACGGGCAGGAATCTCCCAGGCA GTATTTGCACGTGTGGCTTTTAACAGAACTCAGGGCTTGCTCTCAGAAATCCTCCGAAAG GAAGAGGACCCCAAGACAGCATCCCAGTCTTTGCTGGTAAACCTTCGGGCTATGCAGAAT TTCTTGCAGTTACCGGAAGCTGAAAGAGATCGAATTTACCAGGACGAAAGGGAAAGGAGC TTGAATGCAGCCTCCGCTATGGGTCCTGCCCCCCTGATAAGCACACCGCCCAGCCGCCCT CCCCAGGTGAAAACAGCTACTATTGCCACGGAGAGGAATGGGAAACCAGAGAACAATACC ATGAACATTAATGCTTCCATTTACGATGAGATTCAGCAGGAAATGAAGCGCGCGAAAGTT TCCCAGGCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGGTGGTTGTGTGAGCTG TTACGCTGGAAAGAAGATCCCTCTCCAGAAAACAGGACCCTGTGGGAGAACCTCTCCATG ATCCGAAGGTTCCTCAGCCTCCCTCAGCCAGAACGTGATGCCATTTATGAACAGGAGAGC AACGCGGTGCATCACCATGGTGACCGGCCGCCCCACATCATCCACGTGCCCGCAGAGCAG ATTCAGCAGCCACCTGCTCAGGCGCAGCCACAGCCAGCGCCGCCCCCAGCTCAGGCTCAG GCGCAGCAGCCACAGGCCGGGCCCCGGCTCCCCCCGCGGCAGCCCACAGTGGCCGCGCCG GCTGAGGCGGAGGAAGACAGCAGGCAGAAGGCGAGACCACGGACCAAGATCTCAGTGGAG GCGCTGGGCATCCTGCAGAGCTTCATCCAGGACGTGGGCTTGTACCCGGACGAGGAGGCC ATCCAGACTCTGTCCGCCCAGCTGGACCTGCCCAAGTACACCATCATCAAGTTCTTTCAG AATCAGCGGTACTATCTCAAGCATCACGGCAAGCTGAAGGACAACTCGGGCCTGGAGGTG GACGTGGCCGAGTACAAGGAGGAGGAGTTGCTTAAGGATTTGGAGGAGAGTGTGCAAGAC AAAAATGCTAACACCCTTTTCTCGGTGAAACTAGAAGACGAGCTGGCGGTGGAAGGGAAC ACAGACATTAACGCCGACGTCAAAGACTGAGAGGTCTCCTCCTCCATCAGCACCGCTGGT ATTGACTATCTACACGGAGCGTCCACTCTGTACGCGCTCAGCAAACCTTGTCCATTGTTT GGCCAATGAATCTTCAGAAACTTGCACAAACAGGAAAGCCGCAAACGGATGATACAGACT GCACTAAATGTTTTACTCTCTTTTACAAACTGCTTGGCAGCCCCAGGTGAAGCATCGAGG ATTGTTTGGTATTAAAAATGAAAATTTGTGTTCACGGGACACACCCAGGTGTGTACCCTG TAAGCATGATACCAGTGATTTTTTTTTTTTAATTATTATTATTCTGGAGCCTCAAACAAG CATTATAACTTCTGTGATTATTATTTTCTTTAATTATTTCTGTAACACTTCACACTGATC TTTGGAAACTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAACAAGAGGAAGCCGCAGGCGGCAGGAGGAGGGGTGCGCGCGCTGGGGGCCCGGGAGA GCGCACTCGCTAGCTCGCTCCTCGCCTCGCTCTCCCCTTTAAACGCCCACTTCGGATGGG AAAAGAAGACAACTTGAAGTCAAGTTGCAATTAACTTCCGCGGCAGCCGCAGCTTAGCTG CGGCGGCACCAGAGGCAGAAGCCGCCGCCTCGGAAGTCCGACGCCGGCGCGTCCGCCTGG GGAGCTGCTCCTGGTCTCGGGCCGCGCTCGACAGCCACCGCCACCCCCAACGCCCATGCC TGAGTGATCTTTACAGAGTAACTGAGTATGGATCATTTGAACGAGGCAACTCAGGGGAAA GAACATTCAGAAATGTCTAACAATGTGAGTGATCCGAAGGGTCCACCAGCCAAGATTGCC CGCCTGGAGCAGAACGGGAGCCCACTAGGAAGAGGAAGGCTTGGGAGCACAGGTGCAAAA ATGCAGGGAGTGCCTTTAAAACACTCGGGCCATCTGATGAAAAGCAACCTTAGGAAAGGA ACCATGCTACCAGTTTTCTGCGTGGTGGAACATTATGAAAATGCCATCGAATATGATTGC AAGGAGGAGCATGCGGAATTTGTATTGGTGAGAAAGGATATGCTTTTCAACCAGCTGATA GAAATGGCCTTGCTGTCTCTGGGTTATTCGCATAGCTCTGCTGCCCAGGCCAAAGGGCTA ATCCAGGTTGGAAAGTGGAATCCAGTTCCACTGTCTTATGTGACAGACGCCCCTGATGCT ACAGTGGCAGATATGCTTCAAGACGTGTATCATGTGGTCACACTGAAAATTCAGTTACAC AGTTGCCCCAAACTGGAAGACTTGCCCCCAGAGCAGTGGTCGCACACCACCGTCAGGAAC GCACTGAAGGACTTACTGAAGGATATGAATCAGAGTTCCTTGGCCAAGGAGTGCCCCCTT TCACAGAGTATGATTTCTTCCATTGTGAACAGTACTTACTATGCAAATGTCTCAGCGGCA AAATGTCAAGAATTTGGAAGGTGGTACAAACATTTCAAGAAGACAAAAGACATGATGGTT GAGATGGATAGTCTTTCCGAACTATCCCAGCAAGGTGCCAACCACGTCAACTTTGGCCAG CAGCCGGTCCCAGGGAACACAGTGGAGCAGCCTCCATCCCCCGCGCAGCTCTCCCACGGC AGCCAACCCTCTGTCCGGACCCCTCTTCCGAACCTGCACCCTGGGCTCGTGTCAACGCCC ATCAGTCCTCAATTGGTCAACCAGCAGCTGGTGATGGCCCAGCTGCTGAACCAGCAGTAT GCAGTGAACAGACTTCTAGCCCAGCAGTCCTTAAACCAACAATACTTGAACCACCCTCCC CCTGTCAGTAGATCTATGAATAAGCCTTTGGAGCAACAGGTTTCCACCAACACAGAGGTG TCTTCCGAAATCTACCAGTGGGTACGTGATGAACTGAAACGGGCAGGAATCTCCCAGGCA GTATTTGCACGTGTGGCTTTTAACAGAACTCAGGGCTTGCTCTCAGAAATCCTCCGAAAG GAAGAGGACCCCAAGACAGCATCCCAGTCTTTGCTGGTAAACCTTCGGGCTATGCAGAAT TTCTTGCAGTTACCGGAAGCTGAAAGAGATCGAATTTACCAGGACGAAAGGGAAAGGAGC TTGAATGCAGCCTCCGCTATGGGTCCTGCCCCCCTGATAAGCACACCGCCCAGCCGCCCT CCCCAGGTGAAAACAGCTACTATTGCCACGGAGAGGAATGGGAAACCAGAGAACAATACC ATGAACATTAATGCTTCCATTTACGATGAGATTCAGCAGGAAATGAAGCGCGCGAAAGTT TCCCAGGCACTGTTTGCAAAGGTTGCAGCAACCAAAAGCCAGGGGTGGTTGTGTGAGCTG TTACGCTGGAAAGAAGATCCCTCTCCAGAAAACAGGACCCTGTGGGAGAACCTCTCCATG ATCCGAAGGTTCCTCAGCCTCCCTCAGCCAGAACGTGATGCCATTTATGAACAGGAGAGC AACGCGGTGCATCACCATGGTGACCGGCCGCCCCACATCATCCACGTGCCCGCAGAGCAG ATTCAGCAGCCACCTGCTCAGGCGCAGCCACAGCCAGCGCCGCCCCCAGCTCAGGCTCAG GCGCAGCAGCCACAGGCCGGGCCCCGGCTCCCCCCGCGGCAGCCCACAGTGGCCGCGCCG GCTGAGGCGGAGGAAGACAGCAGGCAGAAGGCGAGACCACGGACCAAGATCTCAGTGGAG GCGCTGGGCATCCTGCAGAGCTTCATCCAGGACGTGGGCTTGTACCCGGACGAGGAGGCC ATCCAGACTCTGTCCGCCCAGCTGGACCTGCCCAAGTACACCATCATCAAGTTCTTTCAG AATCAGCGGTACTATCTCAAGCATCACGGCAAGCTGAAGGACAACTCGGGCCTGGAGGTG GACGTGGCCGAGTACAAGGAGGAGGAGTTGCTTAAGGATTTGGAGGAGAGTGTGCAAGAC AAAAATGCTAACACCCTTTTCTCGGTGAAACTAGAAGACGAGCTGGCGGTGGAAGGGAAC ACAGACATTAACGCCGACGTCAAAGACTGAGAGGTCTCCTCCTCCATCAGCACCGCTGGT ATTGACTATCTACACGGAGCGTCCACTCTGTACGCGCTCAGCAAACCTTGTCCATTGTTT GGCCAATGAATCTTCAGAAACTTGCACAAACAGGAAAGCCGCAAACGGATGATACAGACT GCACTAAATGTTTTACTCTCTTTTACAAACTGCTTGGCAGCCCCAGGTGAAGCATCGAGG ATTGTTTGGTATTAAAAATGAAAATTTGTGTTCACGGGACACACCCAGGTGTGTACCCTG TAAGCATGATACCAGTGATTTTTTTTTTTTAATTATTATTATTCTGGAGCCTCAAACAAG CATTATAACTTCTGTGATTATTATTTTCTTTAATTATTTCTGTAACACTTCACACTGATC TTTGGAAACTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1198-1397, - strand, RNAz p=0.961966 | |
| 1238-1380, - strand, RNAz p=0.565785 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1198-1397, - strand, RNAz p=0.961966 | |
| 1238-1380, - strand, RNAz p=0.565785 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 304-539, gnl|bosTau2|chr1 (101240423-101240188) | |
| 304-539, gnl|Hg17|chr3 (18437487-18437252) | |
| 304-539, gnl|Mm7|chr17 (49959227-49958991) | |
| 714-845, gnl|bosTau2|chr1 (101235561-101235430) | |
| 714-845, gnl|Hg17|chr3 (18432631-18432500) | |
| 714-845, gnl|Mm7|chr17 (49954391-49954260) | |
| 1078-1534, gnl|bosTau2|chr1 (101213556-101213100) | |
| 1078-1534, gnl|canFam2|chr23 (27696859-27696376) | |
| 1078-1534, gnl|danRer3|chr9 (24599285-24598806) | |
| 1078-1534, gnl|dasNov1|scaffold_39728 (38831-38347) | |
| 1078-1534, gnl|fr1|chrUn (236783138-236783645) | |
| 1078-1534, gnl|galGal2|chr2 (34372568-34373042) | |
| 1078-1534, gnl|hg17|chr3 (18410946-18411429) | |
| 1078-1534, gnl|Hg17|chr3 (18411413-18410957) | |
| 1078-1534, gnl|loxAfr1|scaffold_417 (69595-70079) | |
| 1078-1534, gnl|mm7|chr17 (49932550-49933032) | |
| 1078-1534, gnl|Mm7|chr17 (49933016-49932560) | |
| 1078-1534, gnl|monDom2|scaffold_7 (74128440-74128928) | |
| 1078-1534, gnl|oryCun1|scaffold_215236 (50837-51319) | |
| 1078-1534, gnl|panTro1|chr2 (19109474-19109957) | |
| 1078-1534, gnl|rheMac2|chr2 (160678923-160679406) | |
| 1078-1534, gnl|rn3|chr9 (3348536-3348054) | |
| 1078-1534, gnl|tetNig1|chrUn_random (31953273-31952762) | |
| 1078-1534, gnl|xenTro1|scaffold_543 (170438-169963) | |
| 1745-1903, gnl|bosTau2|chr1 (101197548-101197390) | |
| 1745-1903, gnl|canFam2|chr23 (27712722-27712552) | |
| 1745-1903, gnl|danRer3|chr9 (24620103-24619937) | |
| 1745-1903, gnl|dasNov1|scaffold_998 (134429-134259) | |
| 1745-1903, gnl|echTel1|scaffold_137711 (873-703) | |
| 1745-1903, gnl|fr1|chrUn (236779056-236779226) | |
| 1745-1903, gnl|galGal2|chr2 (34355502-34355672) | |
| 1745-1903, gnl|hg17|chr3 (18394662-18394832) | |
| 1745-1903, gnl|Hg17|chr3 (18394823-18394665) | |
| 1745-1903, gnl|loxAfr1|scaffold_417 (58545-58715) | |
| 1745-1903, gnl|mm7|chr17 (49917837-49918007) | |
| 1745-1903, gnl|Mm7|chr17 (49917998-49917840) | |
| 1745-1903, gnl|monDom2|scaffold_7 (74107718-74107888) | |
| 1745-1903, gnl|oryCun1|scaffold_215236 (34420-34589) | |
| 1745-1903, gnl|panTro1|chr2 (19093437-19093607) | |
| 1745-1903, gnl|rheMac2|chr2 (160662585-160662755) | |
| 1745-1903, gnl|rn3|chr9 (3363152-3362982) | |
| 1745-1903, gnl|tetNig1|chrUn_random (31956921-31956751) | |
| 1745-1903, gnl|xenTro1|scaffold_543 (188723-188553) | |
| 2104-3012, gnl|bosTau2|chr1 (101165921-101165020) | |
| 2104-3012, gnl|Hg17|chr3 (18366181-18365254) | |
| 2104-3012, gnl|Mm7|chr17 (49890365-49889435) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 304-539, gnl|bosTau2|chr1 (101240423-101240188) | |
| 304-539, gnl|Hg17|chr3 (18437487-18437252) | |
| 304-539, gnl|Mm7|chr17 (49959227-49958991) | |
| 714-845, gnl|bosTau2|chr1 (101235561-101235430) | |
| 714-845, gnl|Hg17|chr3 (18432631-18432500) | |
| 714-845, gnl|Mm7|chr17 (49954391-49954260) | |
| 1078-1534, gnl|bosTau2|chr1 (101213556-101213100) | |
| 1078-1534, gnl|canFam2|chr23 (27696859-27696376) | |
| 1078-1534, gnl|danRer3|chr9 (24599285-24598806) | |
| 1078-1534, gnl|dasNov1|scaffold_39728 (38831-38347) | |
| 1078-1534, gnl|fr1|chrUn (236783138-236783645) | |
| 1078-1534, gnl|galGal2|chr2 (34372568-34373042) | |
| 1078-1534, gnl|hg17|chr3 (18410946-18411429) | |
| 1078-1534, gnl|Hg17|chr3 (18411413-18410957) | |
| 1078-1534, gnl|loxAfr1|scaffold_417 (69595-70079) | |
| 1078-1534, gnl|mm7|chr17 (49932550-49933032) | |
| 1078-1534, gnl|Mm7|chr17 (49933016-49932560) | |
| 1078-1534, gnl|monDom2|scaffold_7 (74128440-74128928) | |
| 1078-1534, gnl|oryCun1|scaffold_215236 (50837-51319) | |
| 1078-1534, gnl|panTro1|chr2 (19109474-19109957) | |
| 1078-1534, gnl|rheMac2|chr2 (160678923-160679406) | |
| 1078-1534, gnl|rn3|chr9 (3348536-3348054) | |
| 1078-1534, gnl|tetNig1|chrUn_random (31953273-31952762) | |
| 1078-1534, gnl|xenTro1|scaffold_543 (170438-169963) | |
| 1745-1903, gnl|bosTau2|chr1 (101197548-101197390) | |
| 1745-1903, gnl|canFam2|chr23 (27712722-27712552) | |
| 1745-1903, gnl|danRer3|chr9 (24620103-24619937) | |
| 1745-1903, gnl|dasNov1|scaffold_998 (134429-134259) | |
| 1745-1903, gnl|echTel1|scaffold_137711 (873-703) | |
| 1745-1903, gnl|fr1|chrUn (236779056-236779226) | |
| 1745-1903, gnl|galGal2|chr2 (34355502-34355672) | |
| 1745-1903, gnl|hg17|chr3 (18394662-18394832) | |
| 1745-1903, gnl|Hg17|chr3 (18394823-18394665) | |
| 1745-1903, gnl|loxAfr1|scaffold_417 (58545-58715) | |
| 1745-1903, gnl|mm7|chr17 (49917837-49918007) | |
| 1745-1903, gnl|Mm7|chr17 (49917998-49917840) | |
| 1745-1903, gnl|monDom2|scaffold_7 (74107718-74107888) | |
| 1745-1903, gnl|oryCun1|scaffold_215236 (34420-34589) | |
| 1745-1903, gnl|panTro1|chr2 (19093437-19093607) | |
| 1745-1903, gnl|rheMac2|chr2 (160662585-160662755) | |
| 1745-1903, gnl|rn3|chr9 (3363152-3362982) | |
| 1745-1903, gnl|tetNig1|chrUn_random (31956921-31956751) | |
| 1745-1903, gnl|xenTro1|scaffold_543 (188723-188553) | |
| 2104-3012, gnl|bosTau2|chr1 (101165921-101165020) | |
| 2104-3012, gnl|Hg17|chr3 (18366181-18365254) | |
| 2104-3012, gnl|Mm7|chr17 (49890365-49889435) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| thg (0.507164) | |
| elu (0.385356) | |
| cst (0.280073) | |
| med (0.232504) | |
| cbl (0.229595) | |
| hea (0.204499) | |
| fty (0.17584) | |
| spl (0.143184) | |
| ova (0.129132) | |
| tra (0.123092) | |
| ebs (0.118301) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.507164) | |
| elu (0.385356) | |
| cst (0.280073) | |
| med (0.232504) | |
| cbl (0.229595) | |
| hea (0.204499) | |
| fty (0.17584) | |
| spl (0.143184) | |
| ova (0.129132) | |
| tra (0.123092) | |
| ebs (0.118301) |